mRNA_H-canaliculatus_F_contig13586.2896.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_F_contig13586.2896.1
Unique Name	mRNA_H-canaliculatus_F_contig13586.2896.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)

Homology

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BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Match: A0A6H5JXN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN6_9PHAE)

HSP 1 Score: 481 bits (1239), Expect = 4.910e-153
Identity = 238/256 (92.97%), Postives = 243/256 (94.92%), Query Frame = 1

Query:    1 FDQRPYFRIFLNLVEEMNKPDRQLDNTNIQVLAAFASAFHALQPAACPGFAFSWLELVSHRSFMPKLLMAKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAAFPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFLQTRHQPVNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAILQLNNKTP 768
            FDQRPYFRIFL+LVEEMNKPDRQLDNTN+QVLAAF SAFHALQPA CPGFAFSWLELVSHRSFMPKLL+ KQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIP  CIQLRNL+LAAFPRSMRLPDPFTPNLKVDLLPEIAL PRILSNYVAALSHN IKQDLDKFLQTRHQP NFL ELP KLRLSA EAAHTGMTYNV C+NSLVVYVGSQAI QLNNKTP
Sbjct: 2475 FDQRPYFRIFLDLVEEMNKPDRQLDNTNLQVLAAFTSAFHALQPAVCPGFAFSWLELVSHRSFMPKLLLVKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPAACIQLRNLILAAFPRSMRLPDPFTPNLKVDLLPEIALPPRILSNYVAALSHNNIKQDLDKFLQTRHQPANFLTELPAKLRLSAQEAAHTGMTYNVPCMNSLVVYVGSQAIQQLNNKTP 2730

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BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Match: D8LMN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN2_ECTSI)

HSP 1 Score: 423 bits (1087), Expect = 4.480e-136
Identity = 210/228 (92.11%), Postives = 214/228 (93.86%), Query Frame = 1

Query:   85 IQVLAAFASAFHALQPAACPGFAFSWLELVSHRSFMPKLLMAKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAAFPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFLQTRHQPVNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAILQLNNKTP 768
            + VLAAF SAFHALQPA CPGFAFSWLELVSHRSFMPKLL+ KQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIP  CIQLRNL+LAAFPRSMRLPDPFTPNLKVDLLPEIAL PRILSNYVAALSHN IKQDLDKFLQTRHQP NFL ELP KLRLSA EAAHTGMTYNV C+NSLVVYVGSQAI QLNNKTP
Sbjct:  985 VVVLAAFTSAFHALQPAVCPGFAFSWLELVSHRSFMPKLLLVKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPAACIQLRNLILAAFPRSMRLPDPFTPNLKVDLLPEIALPPRILSNYVAALSHNNIKQDLDKFLQTRHQPANFLTELPAKLRLSAQEAAHTGMTYNVPCMNSLVVYVGSQAIQQLNNKTP 1212

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BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Match: A0A835ZHM2_9STRA (CCR4-Not complex component, Not1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM2_9STRA)

HSP 1 Score: 360 bits (924), Expect = 1.050e-110
Identity = 180/254 (70.87%), Postives = 208/254 (81.89%), Query Frame = 1

Query:    1 FDQRPYFRIFLNLVEEMNKPDRQLDNTNIQVLAAFASAFHALQPAACPGFAFSWLELVSHRSFMPKLLMAKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAAFPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFLQTRHQPVNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAILQLNNK 762
            FDQRPYFR+ L+L+++ N PDR LD++N+QVLAAFASAFH LQPA  P FAF+WLELVSHR FMP LL+A+Q KGW  MHRLL+DLL FMEP LRR  L  +VR LY+GMLR LLVLLHDFPEFL +YH S CDVIPP+CIQLRNLVL+AFPRSMRLPDPFTPNLKVDLLPEI+  PRILSNY AAL  +GI  DLDK+LQTR  P  FL ELP +LRL A +AA TG  +NV  +++LVVYVGSQAI Q+ +K
Sbjct: 2280 FDQRPYFRLLLSLLQDFNAPDRVLDSSNLQVLAAFASAFHVLQPATAPAFAFAWLELVSHRMFMPTLLLARQQKGWMLMHRLLVDLLSFMEPRLRRAALGGAVRTLYRGMLRVLLVLLHDFPEFLCEYHFSLCDVIPPSCIQLRNLVLSAFPRSMRLPDPFTPNLKVDLLPEISQPPRILSNYTAALVSSGISADLDKYLQTRG-PAQFLVELPARLRLPAVDAARTGSQHNVQALSALVVYVGSQAIAQMQSK 2532

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BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Match: A0A7S2WB04_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WB04_9STRA)

HSP 1 Score: 345 bits (884), Expect = 2.120e-107
Identity = 173/257 (67.32%), Postives = 207/257 (80.54%), Query Frame = 1

Query:    1 FDQRPYFRIFLNLVEEMNKPDRQLDNTNIQVLAAFASAFHALQPAACPGFAFSWLELVSHRSFMPKLLMAKQ-NKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAAFPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFLQTRHQPVNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAILQLNNKTP 768
            FDQRPYFR+F NL+ ++  PD  +D  N+QVL AFA+AFH LQP + P FAFSWLEL+SHR+FMP LL+AK   KGW  MHRLL+DL +FMEP+LRR  L  +++ LY+G LR LLVLLHDFPEFL DYH SFCDVIPP CIQLRNL L+AFPR+MRLPDPFTPNLKVDLLPEIA  PRILSNYVAALS+NGI+Q+LD +L+ R  P +FL  LPG+LR S  +AA    +YNV+ IN+LVVY+GSQ+ILQL  K+P
Sbjct:  719 FDQRPYFRVFANLLRDLTAPDPVVDANNLQVLGAFANAFHGLQPQSVPAFAFSWLELISHRTFMPTLLLAKPAQKGWMLMHRLLVDLFVFMEPYLRRSQLPLAIKTLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPNCIQLRNLFLSAFPRTMRLPDPFTPNLKVDLLPEIAQPPRILSNYVAALSYNGIRQELDNYLKNR-APKSFLEWLPGRLRASPSQAASGSASYNVASINALVVYIGSQSILQLQ-KSP 973

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BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Match: A0A6S8SJ33_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8SJ33_9STRA)

HSP 1 Score: 333 bits (855), Expect = 1.400e-101
Identity = 167/255 (65.49%), Postives = 203/255 (79.61%), Query Frame = 1

Query:    1 FDQRPYFRIFLNLVEEMNKPDRQLDNTNIQVLAAFASAFHALQPAACPGFAFSWLELVSHRSFMPKLLMAKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAAFPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFLQTRHQPVNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAILQLNNKT 765
            FDQRPYFR+FLNL++++N PD  LD++N +VLAAFA+  HALQPA  PGFAFSWLELVSHR FMP LL+AK  KGW+ MHRLL+DL +F+EP+LR+  L ++ RLLY+G LR LLVLLHDFPEFLSDYH SFCDVIP +CIQLRNL L+AFPRSMRLPDPFTPNLKVDLLPEI+  PRILSN V AL    +++ LD++L TRH P++FL +LP KL  +     H   +YNV  +NSLVV+VG  AI QL+ K+
Sbjct: 1301 FDQRPYFRLFLNLLQDLNVPDPVLDSSNPRVLAAFATVLHALQPAVTPGFAFSWLELVSHRMFMPNLLLAKNQKGWALMHRLLVDLFVFLEPYLRQVQLSDAARLLYKGALRVLLVLLHDFPEFLSDYHFSFCDVIPSSCIQLRNLFLSAFPRSMRLPDPFTPNLKVDLLPEISQPPRILSNCVIALEACALREPLDEYLLTRH-PISFLLDLPRKLLDANTNNDHVITSYNVPLVNSLVVHVGMTAISQLHTKS 1554

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BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Match: A0A2G3DJ81_CAPCH (CCR4-NOT transcription complex subunit 1 n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3DJ81_CAPCH)

HSP 1 Score: 313 bits (802), Expect = 3.160e-100
Identity = 159/256 (62.11%), Postives = 188/256 (73.44%), Query Frame = 1

Query:    1 FDQRPYFRIFLNLVEEMNKPDRQLDNTNIQVLAAFASAFHALQPAACPGFAFSWLELVSHRSFMPKLLMAKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAAFPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFLQTRHQPVNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAILQLNNKTP 768
            F+ RPYFR+F+N + +++  D   D  N  VL A A+AFHALQP   PGF+F+WLELVSHRSFMPKLL     KGW Y  RLL+DL  FMEP LR   L E V+ LY+G LR LLVLLHDFPEFL DYH SFCDVIPP+CIQ+RN++L+AFPR+MRLPDP TPNLK+DLL EI+ +PRILS   AAL    +K D+D++L+TR Q   FL+EL  KL LS  EAA  G  YNV  INSLV+YVG QAI QL  KTP
Sbjct:  200 FNPRPYFRLFINWLVDLSSLDPVFDGANFHVLTALANAFHALQPLKVPGFSFAWLELVSHRSFMPKLLAGNAQKGWPYFQRLLVDLFQFMEPFLRNAELGEPVQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKSKQMKGDVDEYLKTRQQGSPFLSELKQKLLLSPSEAAKAGTRYNVPLINSLVLYVGMQAIQQLQAKTP 455

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BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Match: A0A7C8ZN98_OPUST (Not1 domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZN98_OPUST)

HSP 1 Score: 311 bits (796), Expect = 6.290e-99
Identity = 156/257 (60.70%), Postives = 191/257 (74.32%), Query Frame = 1

Query:    1 FDQRPYFRIFLNLVEEMNKPDRQLDNTNIQVLAAFASAFHALQPAACPGFAFSWLELVSHRSFMPKLLMAKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAAFPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFLQTRHQPVNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAI--LQLNNKT 765
            F+ RPYFR+F+N + ++   D   D  N QVL+AFA+AFHALQP   P F+F+WLELVSHR+FMPKLL     KGW ++HRLL+DL  FMEP LR   L E +R LY+G LR LLVLLHDFPEFL DYH SFCDVIPP+CIQ+RN++L+AFPR+MRLPDP TPNLK+DLL E++ APRILS   AA+    +K D+D++L+TR Q   FL EL  +L LS  EAAH G  YNV  INSLV+YVG QAI  LQ  N++
Sbjct:  238 FNPRPYFRLFINWLSDIGSLDPLHDGVNFQVLSAFANAFHALQPLKVPAFSFAWLELVSHRTFMPKLLTGNSQKGWPFLHRLLVDLFQFMEPFLRNAELGELIRFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLEEMSQAPRILSEVDAAIKAKQMKADVDEYLRTRQQGSPFLGELKQRLLLSPKEAAHAGTRYNVPLINSLVLYVGMQAIQLLQARNRS 494

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BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Match: A0A2R6RCU0_ACTCC (CCR4-NOT transcription complex subunit like n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6RCU0_ACTCC)

HSP 1 Score: 308 bits (790), Expect = 6.840e-98
Identity = 156/256 (60.94%), Postives = 186/256 (72.66%), Query Frame = 1

Query:    1 FDQRPYFRIFLNLVEEMNKPDRQLDNTNIQVLAAFASAFHALQPAACPGFAFSWLELVSHRSFMPKLLMAKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAAFPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFLQTRHQPVNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAILQLNNKTP 768
            F+ RPYFR+F+N + ++   D   D  N QVL AFA+AFHALQP   PGF+++WLELVSHRSFMPKLL     KGW YM RLL+D+  F+EP LR   L E V  LY+G LR LLVLLHD+PEFL DYH SFCDVIPP+CIQ+RN++L+AFPR+MRLPDP TPNLK+DLL EI+  PRILS   AAL    IK DLD++ +TR Q  +FL EL  KL L   +AA  G  YNV  INSLV+YVG QAI QL  +TP
Sbjct:  247 FNARPYFRLFINWLLDLGSMDPVFDGANFQVLIAFANAFHALQPLKVPGFSYAWLELVSHRSFMPKLLTGNAQKGWPYMQRLLVDVFQFLEPFLRNAELEEPVHFLYKGTLRVLLVLLHDYPEFLCDYHFSFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLAEISQPPRILSEVDAALKAKLIKGDLDEYQKTRQQGSSFLTELKQKLLLPPGDAARAGTRYNVPLINSLVLYVGMQAIQQLQARTP 502

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BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Match: UPI000B8CD776 (CCR4-NOT transcription complex subunit 1-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CD776)

HSP 1 Score: 307 bits (787), Expect = 1.530e-96
Identity = 155/255 (60.78%), Postives = 188/255 (73.73%), Query Frame = 1

Query:    1 FDQRPYFRIFLNLVEEMNKPDRQLDNTNIQVLAAFASAFHALQPAACPGFAFSWLELVSHRSFMPKLLMAKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAAFPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFLQTRHQPVNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAILQLNNKT 765
            F+ RPYFR+F+N + ++   D   D+ N Q+L AFA+AFHALQP   P F+F+WLELVSHRSFMPKLL     KGW Y+ RLL+DLL F+EP LR   L   V  LY+G LR LLVLLHDFPEFL DYH +FCDVIPP+CIQ+RN++L+AFPR+MRLPDP TPNLK+DLLPEI   PRILS   AAL    +K D+D++L+TR Q  +FL+EL  +L LS  EAA  G  YNV  INSLV+YVG QAI QL  +T
Sbjct:  337 FNPRPYFRLFINWLLDLGSLDPLTDSANFQILTAFANAFHALQPLKVPAFSFAWLELVSHRSFMPKLLTGNGQKGWPYVQRLLVDLLQFLEPFLRHAELGVPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIREPPRILSEVDAALKAKQMKADVDEYLKTRQQGSSFLSELKQRLLLSPSEAASAGTRYNVPLINSLVLYVGMQAIQQLQART 591

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BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Match: A0A1U8I0Y6_GOSHI (CCR4-NOT transcription complex subunit 1-like n=2 Tax=Gossypium TaxID=3633 RepID=A0A1U8I0Y6_GOSHI)

HSP 1 Score: 300 bits (768), Expect = 5.920e-96
Identity = 152/257 (59.14%), Postives = 185/257 (71.98%), Query Frame = 1

Query:    1 FDQRPYFRIFLNLVEEMNKPDRQLDNTNIQVLAAFASAFHALQPAACPGFAFSWLELVSHRSFMPKLLMAKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAAFPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFLQTRHQP-VNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAILQLNNKTP 768
            F+ RPYFR+F+N + ++   D   D  N Q+L AFA+ FH LQP   P F F+WLELVSHR+FMPKLL     KGW Y+ RLL+DLL F+EP LR   L   V  LY+G LR LLVLLHDFPEFL DYH +FCDVIPP+CIQ+RN++L+AFPR+MRLPDP TPNLK+DLLPEI  +PRILS   AAL    +K D+D++L+TR Q   +FL EL  +L LS  EAA  G  YNV  INSLV+YVG QAI QL ++ P
Sbjct:  127 FNPRPYFRLFINWLLDLGSLDPVTDGANFQILTAFANTFHVLQPLKVPSFCFAWLELVSHRTFMPKLLTGNSQKGWPYIQRLLVDLLQFLEPFLRNAELGVPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRESPRILSEVDAALKAKQMKADVDEYLKTRPQGGSSFLTELKQRLLLSPSEAASAGTRYNVPLINSLVLYVGMQAIQQLQSRVP 383

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JXN6_9PHAE	4.910e-153	92.97	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LMN2_ECTSI	4.480e-136	92.11	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835ZHM2_9STRA	1.050e-110	70.87	CCR4-Not complex component, Not1-domain-containing...	[more]
A0A7S2WB04_9STRA	2.120e-107	67.32	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A6S8SJ33_9STRA	1.400e-101	65.49	Hypothetical protein n=3 Tax=Pelagomonas calceolat...	[more]
A0A2G3DJ81_CAPCH	3.160e-100	62.11	CCR4-NOT transcription complex subunit 1 n=1 Tax=C...	[more]
A0A7C8ZN98_OPUST	6.290e-99	60.70	Not1 domain-containing protein n=1 Tax=Opuntia str...	[more]
A0A2R6RCU0_ACTCC	6.840e-98	60.94	CCR4-NOT transcription complex subunit like n=1 Ta...	[more]
UPI000B8CD776	1.530e-96	60.78	CCR4-NOT transcription complex subunit 1-like n=1 ...	[more]
A0A1U8I0Y6_GOSHI	5.920e-96	59.14	CCR4-NOT transcription complex subunit 1-like n=2 ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig13586	contig	H-canaliculatus_F_contig13586:221..2700 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	426.8
Seed ortholog evalue	7.2e-117
Seed eggNOG ortholog	2880.D8LMN2
KEGG ko	ko:K12604
KEGG Pathway	ko03018,map03018
GOs	GO:0000288,GO:0000289,GO:0000932,GO:0000956,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0017148,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0030014,GO:0030015,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032774,GO:0032947,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576,GO:1990904,GO:2000112,GO:2000113
EggNOG free text desc.	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
EggNOG OGs	COG5103@1,KOG1831@2759
COG Functional cat.	DK
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03019
Hectar predicted targeting category	other localisation
Exons	5
Model size	768
Cds size	768
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig13586.2896.1	prot_H-canaliculatus_F_contig13586.2896.1	Hapterophycus canaliculatus Oshoro5f female	polypeptide	H-canaliculatus_F_contig13586 221..2700 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929101.6347506-CDS-H-canaliculatus_F_contig13586:220..310	1622929101.6347506-CDS-H-canaliculatus_F_contig13586:220..310	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig13586 221..310 +
1696845679.1992884-CDS-H-canaliculatus_F_contig13586:220..310	1696845679.1992884-CDS-H-canaliculatus_F_contig13586:220..310	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig13586 221..310 +
1622929101.6520965-CDS-H-canaliculatus_F_contig13586:1060..1257	1622929101.6520965-CDS-H-canaliculatus_F_contig13586:1060..1257	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig13586 1061..1257 +
1696845679.2143383-CDS-H-canaliculatus_F_contig13586:1060..1257	1696845679.2143383-CDS-H-canaliculatus_F_contig13586:1060..1257	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig13586 1061..1257 +
1622929101.6709538-CDS-H-canaliculatus_F_contig13586:1545..1756	1622929101.6709538-CDS-H-canaliculatus_F_contig13586:1545..1756	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig13586 1546..1756 +
1696845679.2230406-CDS-H-canaliculatus_F_contig13586:1545..1756	1696845679.2230406-CDS-H-canaliculatus_F_contig13586:1545..1756	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig13586 1546..1756 +
1622929101.6870797-CDS-H-canaliculatus_F_contig13586:2151..2322	1622929101.6870797-CDS-H-canaliculatus_F_contig13586:2151..2322	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig13586 2152..2322 +
1696845679.2314074-CDS-H-canaliculatus_F_contig13586:2151..2322	1696845679.2314074-CDS-H-canaliculatus_F_contig13586:2151..2322	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig13586 2152..2322 +
1622929101.710026-CDS-H-canaliculatus_F_contig13586:2601..2700	1622929101.710026-CDS-H-canaliculatus_F_contig13586:2601..2700	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig13586 2602..2700 +
1696845679.239718-CDS-H-canaliculatus_F_contig13586:2601..2700	1696845679.239718-CDS-H-canaliculatus_F_contig13586:2601..2700	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig13586 2602..2700 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_F_contig13586:221..2700+
coding sequence from alignment at H-canaliculatus_F_contig13586:221..2700+

protein sequence of mRNA_H-canaliculatus_F_contig13586.2896.1

>prot_H-canaliculatus_F_contig13586.2896.1 ID=prot_H-canaliculatus_F_contig13586.2896.1|Name=mRNA_H-canaliculatus_F_contig13586.2896.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=256bp
FDQRPYFRIFLNLVEEMNKPDRQLDNTNIQVLAAFASAFHALQPAACPGF
AFSWLELVSHRSFMPKLLMAKQNKGWSYMHRLLIDLLIFMEPHLRRPTLL
ESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAA
FPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFL
QTRHQPVNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAILQ
LNNKTP

mRNA from alignment at H-canaliculatus_F_contig13586:221..2700+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_F_contig13586.2896.1 ID=mRNA_H-canaliculatus_F_contig13586.2896.1|Name=mRNA_H-canaliculatus_F_contig13586.2896.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2480bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13586:221..2700+ (Hapterophycus canaliculatus Oshoro5f female)
TTCGACCAGAGGCCGTATTTCAGGATCTTCCTCAACCTCGTCGAGGAGAT
GAACAAGCCGGACCGTCAGCTGGACAACACCAACATACAGGTGAACGCGC
GCGCGCACGTTGGTTCGTCAGATGTTACCGTTGCGTGCGAGTGACTCGTC
TGCGGCTGCAAGCGGGCGGTTGGTCGGTCGTGCCATCGAGGCGGGCGGGT
GTTGGAGGGAGGTTAAAGAGTCGATCGCATCGTCTGTTGGTGGTGCACGT
GTGTGCGTTAGAGTGGACCTGGTGTGCGAGGGTGCCGTGGCCGAGGCCAG
GTGGCGACAGAGGTCACACATACTTCCGGGGACGGCTAAACAGACGCTTT
GGGGAATGGATCGCGGAGGGGAGAGTGGATCGCATCCCCTGTTCTAACCC
GAGCATACCTACTTCTTTTGGAGAAAAAAGTCACCAACACCAATGGAACA
CGCTCCGCTGAGACAAATAATATGAAGATAGCGACTTGGGAGGATTTTTG
TTTCTTGCGAAAGGGAAACAGTACGTATCGTCTTGTGTGGCGACGGTCGC
GAAGGACGGCGATTTTCAGGCGGGCGTACTCGAGGACTTCGGGCGAAAAG
CGCGACAATCGTAGACGCCATCACTGGGAGTTCAATCGTCAGCCACCAGC
CCTAGACCACTACTTGGGTGCTCCGAGAAAGTCGTTCCTCTTGCGAGCAA
GTTCCAAAAGTGCCATCCAGAGATAGAACCGGCTTGTAGCAGCAGTACAA
GTACTTGTAGTCCGTGTCTTCCGGCCATCTTGCAGCATACCCCCCGGCTC
ACCCCCACCCCCCTCCCCGATTATTTTTCTGTTTGATCAGGTTTTGGCCG
CCTTTGCGTCTGCGTTCCACGCGCTGCAGCCTGCGGCGTGCCCCGGCTTC
GCCTTCTCTTGGCTCGAGCTGGTGTCGCACCGCTCCTTCATGCCGAAGCT
CCTCATGGCGAAGCAGAACAAGGGCTGGTCTTACATGCACCGCCTCCTGA
TCGACCTCCTGATCTTCATGGAGCCCCACCTGCGCAGGTGTGTGTGCTTT
CTTCTATTGGGTTTCTGCGTCTATGCGAACGTGACTGACTTGTGTTTGTG
CGGTCCACTTGTATCCTACGGGCTGAGCACACGCCGAAACTCGTGCACTG
CTTGTGGGATGATCCCCCAGGCATCGACCGGTAGGCAAGTATTGGTCAGG
CGAGCAGCCCTCCAACTACACCTGTCTTCTGTCGGGTGATCGATTTCGAC
CCTTTCTTGCTCCCTCTCGCTTTGACAACTAAGAACATGGCGGAACGCAA
TCCCCATCCCCTTTGCCCCACCCAGGCCAACGCTGCTGGAGTCCGTGCGG
CTCTTGTACCAGGGCATGCTTCGCACGCTGCTGGTGCTACTGCACGACTT
CCCGGAGTTCCTGTCGGACTACCACCTGAGCTTCTGCGACGTGATCCCGC
CGACTTGCATCCAGCTGCGCAACCTCGTTCTGGCCGCTTTCCCGCGCAGC
ATGCGTCTGCCGGACCCCTTCACGCCCAACCTCAAGGTAAGGCGGAGGCT
GTCTTACGCTGCTACTGCTACTGTTGGCGATGCTGGACGCGCGTCGACGT
CGAATTTGCGTTTTTCGGCGGAGAGCTCCGTCGTGCATGTTGGTGTGCGC
AATACCGATTTTTATCCTCGGAAAACGTGTCGGAATCTTAGCGGGACACC
GAATCGGTCCGTCGATCGATCGTCCTTCCTTCTTACTCTTTGTTTTACGT
TTTCATTGTGTTCCTTGCGGTTTGTCGACGGGTGCGCAATCGATCGGGCG
CGACCGAATCAACCTATCGCGGGTCCGCACTCCCTTCGTGTCACAAAGTC
CGCAAGGATCCGTAACATTAACTCGCCCTTCCCACGCTGCCGACGTCCGT
GAACAACTGAAACCAAAATAATAAATTTAAGGTGGATCTTCTACCGGAGA
TTGCGCTTGCCCCGAGGATCCTGAGCAACTACGTGGCGGCGCTGTCCCAC
AACGGCATCAAGCAAGACCTGGACAAGTTCCTCCAGACCAGGCACCAGCC
TGTCAACTTCCTGGCCGAGCTACCGGGAAAGCTGAGGCTGTCGGCGCATG
AGGTATGCGCGTGTGTCTGTCTGTGTCTGTCTCGTCCGTAGGCATTTCCT
CTTTAATTCGTCGTCTGTGTCTCCTTGAGTCTTCATCGTGAGGGCGTCGG
CCCACCAATCAGACGACTCCAGGGTGAGCGTTTGTCTTGACGTGGGTTCG
GTTTCCTCTGTGGTAATTTTTTTTCCTTCAAAATGTTTTCGTCTCGTCGA
CCGGTAGATAAGCGAAAGGCCGTGCCGACAACTTGAACCTCTACCCGCTT
GCGTGTCTGGCATTTTGCTTGTCTGCTCCAGGCGGCGCACACGGGCATGA
CGTACAACGTGTCTTGCATCAACTCCCTCGTGGTGTACGTGGGAAGCCAG
GCCATTCTGCAGCTCAACAACAAGACCCCG

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13586:221..2700+

>mRNA_H-canaliculatus_F_contig13586.2896.1 ID=mRNA_H-canaliculatus_F_contig13586.2896.1|Name=mRNA_H-canaliculatus_F_contig13586.2896.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1536bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13586:221..2700+ (Hapterophycus canaliculatus Oshoro5f female)
TTCGACCAGAGGCCGTATTTCAGGATCTTCCTCAACCTCGTCGAGGAGAT
GAACAAGCCGGACCGTCAGCTGGACAACACCAACATACAGTTCGACCAGA
GGCCGTATTTCAGGATCTTCCTCAACCTCGTCGAGGAGATGAACAAGCCG
GACCGTCAGCTGGACAACACCAACATACAGGTTTTGGCCGCCTTTGCGTC
TGCGTTCCACGCGCTGCAGCCTGCGGCGTGCCCCGGCTTCGCCTTCTCTT
GGCTCGAGCTGGTGTCGCACCGCTCCTTCATGCCGAAGCTCCTCATGGCG
AAGCAGAACAAGGGCTGGTCTTACATGCACCGCCTCCTGATCGACCTCCT
GATCTTCATGGAGCCCCACCTGCGCAGGTTTTGGCCGCCTTTGCGTCTGC
GTTCCACGCGCTGCAGCCTGCGGCGTGCCCCGGCTTCGCCTTCTCTTGGC
TCGAGCTGGTGTCGCACCGCTCCTTCATGCCGAAGCTCCTCATGGCGAAG
CAGAACAAGGGCTGGTCTTACATGCACCGCCTCCTGATCGACCTCCTGAT
CTTCATGGAGCCCCACCTGCGCAGGCCAACGCTGCTGGAGTCCGTGCGGC
TCTTGTACCAGGGCATGCTTCGCACGCTGCTGGTGCTACTGCACGACTTC
CCGGAGTTCCTGTCGGACTACCACCTGAGCTTCTGCGACGTGATCCCGCC
GACTTGCATCCAGCTGCGCAACCTCGTTCTGGCCGCTTTCCCGCGCAGCA
TGCGTCTGCCGGACCCCTTCACGCCCAACCTCAAGGCCAACGCTGCTGGA
GTCCGTGCGGCTCTTGTACCAGGGCATGCTTCGCACGCTGCTGGTGCTAC
TGCACGACTTCCCGGAGTTCCTGTCGGACTACCACCTGAGCTTCTGCGAC
GTGATCCCGCCGACTTGCATCCAGCTGCGCAACCTCGTTCTGGCCGCTTT
CCCGCGCAGCATGCGTCTGCCGGACCCCTTCACGCCCAACCTCAAGGTGG
ATCTTCTACCGGAGATTGCGCTTGCCCCGAGGATCCTGAGCAACTACGTG
GCGGCGCTGTCCCACAACGGCATCAAGCAAGACCTGGACAAGTTCCTCCA
GACCAGGCACCAGCCTGTCAACTTCCTGGCCGAGCTACCGGGAAAGCTGA
GGCTGTCGGCGCATGAGGTGGATCTTCTACCGGAGATTGCGCTTGCCCCG
AGGATCCTGAGCAACTACGTGGCGGCGCTGTCCCACAACGGCATCAAGCA
AGACCTGGACAAGTTCCTCCAGACCAGGCACCAGCCTGTCAACTTCCTGG
CCGAGCTACCGGGAAAGCTGAGGCTGTCGGCGCATGAGGCGGCGCACACG
GGCATGACGTACAACGTGTCTTGCATCAACTCCCTCGTGGTGTACGTGGG
AAGCCAGGCCATTCTGCAGCTCAACAACAAGACCCCGGCGGCGCACACGG
GCATGACGTACAACGTGTCTTGCATCAACTCCCTCGTGGTGTACGTGGGA
AGCCAGGCCATTCTGCAGCTCAACAACAAGACCCCG