mRNA_H-canaliculatus_F_contig13575.2885.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13575.2885.1
Unique NamemRNA_H-canaliculatus_F_contig13575.2885.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13575.2885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13575contigH-canaliculatus_F_contig13575:1891..2358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size468
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929100.4465945-CDS-H-canaliculatus_F_contig13575:1890..23581622929100.4465945-CDS-H-canaliculatus_F_contig13575:1890..2358Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13575 1891..2358 -
1696845678.8074598-CDS-H-canaliculatus_F_contig13575:1890..23581696845678.8074598-CDS-H-canaliculatus_F_contig13575:1890..2358Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13575 1891..2358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13575.2885.1prot_H-canaliculatus_F_contig13575.2885.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13575 1891..2358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13575.2885.1

>prot_H-canaliculatus_F_contig13575.2885.1 ID=prot_H-canaliculatus_F_contig13575.2885.1|Name=mRNA_H-canaliculatus_F_contig13575.2885.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=156bp
EKGITRTVSLAPKTPRRALEIAQLKRKRRPTISSTSARSSPKLSAASLCC
RGNVLNPHSKELTKALWDSVCLRRYSFSVVKPFFKRDRVPLRHTAFSVRK
SLSQGVRFDGPADLNTAVLHLARFSTLHTFILTHFSFPFRLEMNQPRRFS
TIVVNH
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mRNA from alignment at H-canaliculatus_F_contig13575:1891..2358-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13575.2885.1 ID=mRNA_H-canaliculatus_F_contig13575.2885.1|Name=mRNA_H-canaliculatus_F_contig13575.2885.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=468bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13575:1891..2358- (Hapterophycus canaliculatus Oshoro5f female)
GAGAAAGGAATCACGCGAACAGTCTCCCTCGCACCCAAAACACCAAGGAG
AGCGCTTGAGATCGCACAGTTGAAGCGAAAAAGACGCCCGACCATCTCGT
CCACCTCCGCCAGGAGCTCGCCCAAACTCTCTGCTGCCTCTCTTTGTTGC
AGGGGCAATGTACTGAACCCTCACTCAAAGGAATTGACAAAAGCCCTCTG
GGACAGTGTATGCCTCAGACGGTATTCCTTTAGTGTTGTTAAACCTTTTT
TCAAAAGGGACAGAGTTCCACTACGCCACACCGCGTTTTCAGTCCGGAAA
TCGTTGTCCCAGGGAGTTAGATTCGACGGACCGGCAGATCTCAACACTGC
TGTACTGCACCTGGCTCGCTTTTCTACCCTTCATACGTTCATCCTGACCC
ATTTTTCTTTTCCCTTCCGACTGGAGATGAACCAACCCCGTAGATTCTCC
ACGATCGTCGTGAACCAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13575:1891..2358-

>mRNA_H-canaliculatus_F_contig13575.2885.1 ID=mRNA_H-canaliculatus_F_contig13575.2885.1|Name=mRNA_H-canaliculatus_F_contig13575.2885.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=936bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13575:1891..2358- (Hapterophycus canaliculatus Oshoro5f female)
GAGAAAGGAATCACGCGAACAGTCTCCCTCGCACCCAAAACACCAAGGAG
AGCGCTTGAGATCGCACAGTTGAAGCGAAAAAGACGCCCGACCATCTCGT
CCACCTCCGCCAGGAGCTCGCCCAAACTCTCTGCTGCCTCTCTTTGTTGC
AGGGGCAATGTACTGAACCCTCACTCAAAGGAATTGACAAAAGCCCTCTG
GGACAGTGTATGCCTCAGACGGTATTCCTTTAGTGTTGTTAAACCTTTTT
TCAAAAGGGACAGAGTTCCACTACGCCACACCGCGTTTTCAGTCCGGAAA
TCGTTGTCCCAGGGAGTTAGATTCGACGGACCGGCAGATCTCAACACTGC
TGTACTGCACCTGGCTCGCTTTTCTACCCTTCATACGTTCATCCTGACCC
ATTTTTCTTTTCCCTTCCGACTGGAGATGAACCAACCCCGTAGATTCTCC
ACGATCGTCGTGAACCACGAGAAAGGAATCACGCGAACAGTCTCCCTCGC
ACCCAAAACACCAAGGAGAGCGCTTGAGATCGCACAGTTGAAGCGAAAAA
GACGCCCGACCATCTCGTCCACCTCCGCCAGGAGCTCGCCCAAACTCTCT
GCTGCCTCTCTTTGTTGCAGGGGCAATGTACTGAACCCTCACTCAAAGGA
ATTGACAAAAGCCCTCTGGGACAGTGTATGCCTCAGACGGTATTCCTTTA
GTGTTGTTAAACCTTTTTTCAAAAGGGACAGAGTTCCACTACGCCACACC
GCGTTTTCAGTCCGGAAATCGTTGTCCCAGGGAGTTAGATTCGACGGACC
GGCAGATCTCAACACTGCTGTACTGCACCTGGCTCGCTTTTCTACCCTTC
ATACGTTCATCCTGACCCATTTTTCTTTTCCCTTCCGACTGGAGATGAAC
CAACCCCGTAGATTCTCCACGATCGTCGTGAACCAC
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