mRNA_H-canaliculatus_F_contig13567.2879.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13567.2879.1
Unique NamemRNA_H-canaliculatus_F_contig13567.2879.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13567.2879.1 vs. uniprot
Match: A0A6H5JEK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK2_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 4.940e-21
Identity = 148/385 (38.44%), Postives = 168/385 (43.64%), Query Frame = 1 
Query:    7 RRVGGRLSFSSAVGTDDGSSGEGSG----AAAAARHERARVAGRAPTRRRASTPGTITAQQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRTRSPLAGTPMDVDSPAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGGPAPFVETAPIMQFGRRPTTRATSRRASGGTGRSSAAAAGEPVKAAGSVARKAVSIGGSGSGRXXXXXXXVXXXXXXXXXDNPPAGQPEADDGEVRLTRAEWQCLQYEETISYAVKHASQLALXXXXXXXXXXXXXXXXXXXXFEEKPGERETMVAALAVVKAAHATSLALAATGXXDAEQRQGNSAAAASRGGVSKTQEPARGGGRAGGSPVRGGG 1149
            RRVGGRLSF+SAVGTD+GSSGEG G    AA  A     R + R P     S  G  T   +                   X                                P RTRSPLAGTPMDVDSP  XXXXX                          RRGG APFVET P++    R                                              XXXXXXX XXXXXXXXX           +GE+RLTRAEWQC+QYEET+SYAV+H+ QLAL                      EKPGERET++AALAVVKAAHATS+ALAA G    E  QG++    + G  +K Q   R G    GSP+RGGG
Sbjct:  297 RRVGGRLSFTSAVGTDEGSSGEGCGLGTTAAGRAHASSTRNSMRPPPPSGVSAGGNGTTPASAALTGRGSRLSTGATATTAXETAGAG--------------------------PTRTRSPLAGTPMDVDSPGXXXXXXARRRSREPIDEPTVGPAAAT------RRGGRAPFVETTPVVPQSNRXXXXXXX----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGELRLTRAEWQCVQYEETVSYAVRHSGQLALAASAGAAADSPSTAAD-----SEKPGERETIMAALAVVKAAHATSVALAARG----EAEQGDT----TTGWATKLQGSCRDGV---GSPIRGGG 617
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13567.2879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JEK2_9PHAE4.940e-2138.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13567contigH-canaliculatus_F_contig13567:162..1634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1150
Cds size1149
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929099.8805656-CDS-H-canaliculatus_F_contig13567:162..11711622929099.8805656-CDS-H-canaliculatus_F_contig13567:162..1171Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13567 163..1171 -
1696845678.575776-CDS-H-canaliculatus_F_contig13567:162..11711696845678.575776-CDS-H-canaliculatus_F_contig13567:162..1171Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13567 163..1171 -
1622929099.8945873-CDS-H-canaliculatus_F_contig13567:1494..16341622929099.8945873-CDS-H-canaliculatus_F_contig13567:1494..1634Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13567 1495..1634 -
1696845678.5879157-CDS-H-canaliculatus_F_contig13567:1494..16341696845678.5879157-CDS-H-canaliculatus_F_contig13567:1494..1634Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13567 1495..1634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13567.2879.1prot_H-canaliculatus_F_contig13567.2879.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13567 163..1634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13567.2879.1

>prot_H-canaliculatus_F_contig13567.2879.1 ID=prot_H-canaliculatus_F_contig13567.2879.1|Name=mRNA_H-canaliculatus_F_contig13567.2879.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=383bp
GGRRVGGRLSFSSAVGTDDGSSGEGSGAAAAARHERARVAGRAPTRRRAS
TPGTITAQQARQQASSTRNAMRPPPPAGTTPASAALTGRASRSSTAAAAG
GAGGAGEAAAGGPRRTRSPLAGTPMDVDSPAGGGGGESVMSTRRRSRESR
DAPTPAAGAGGGGRRGGPAPFVETAPIMQFGRRPTTRATSRRASGGTGRS
SAAAAGEPVKAAGSVARKAVSIGGSGSGRGGGGGAGVGGAGVGGAGDNPP
AGQPEADDGEVRLTRAEWQCLQYEETISYAVKHASQLALAAASSSSSSSS
SAPAPATATFEEKPGERETMVAALAVVKAAHATSLALAATGGGDAEQRQG
NSAAAASRGGVSKTQEPARGGGRAGGSPVRGGG
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mRNA from alignment at H-canaliculatus_F_contig13567:162..1634-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13567.2879.1 ID=mRNA_H-canaliculatus_F_contig13567.2879.1|Name=mRNA_H-canaliculatus_F_contig13567.2879.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1473bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13567:162..1634- (Hapterophycus canaliculatus Oshoro5f female)
GGGGGAAGAAGGGTTGGGGGTAGGCTCTCCTTTTCTTCCGCAGTGGGGAC
GGACGACGGGAGTAGCGGGGAAGGAAGCGGGGCTGCGGCTGCGGCGAGGC
ACGAGCGGGCCAGGGTTGCGGGGAGGGCTCCGACTAGGAGGTGAGTGAGT
TGCAGAGGCGACACCCAACATTTGCGGCGGTTTGGAGGACACGTTAGGGT
TGACGATACGTCGCTCCAATGTTTTTCAGATCAAGACACGGCCGGGAGGG
CTCGTACGTCGTGGCTCCCAGGCCTTGGTGCAGAAACAAGGCGCCTGTCT
TGCTCGCTGCAAAAACTGTGGTACTGGACACAGAAGCAGTTTGACGCGCC
CGCCAATGCGTCCCGCAAAGCCGCCCTTTCGGACACGCTTGATCACGACG
TTTCGCGATAAAGAACTAAATCTGCTGACCGTCGATCCTTCACGATGGCT
GTCGCCGCAACAGACGAGCGTCTACGCCGGGCACCATCACCGCTCAGCAG
GCGAGGCAGCAAGCCTCTTCCACGAGAAATGCGATGCGACCCCCGCCGCC
CGCCGGAACGACCCCGGCAAGCGCAGCCCTGACCGGCCGCGCCTCTAGGT
CGTCGACAGCGGCGGCGGCCGGCGGTGCGGGAGGAGCAGGCGAAGCCGCC
GCGGGGGGTCCGAGAAGAACACGGAGTCCTTTGGCTGGCACGCCGATGGA
TGTGGACAGTCCGGCCGGCGGCGGAGGCGGTGAAAGCGTCATGTCGACCC
GAAGGAGGTCGAGGGAATCCAGGGACGCGCCCACTCCGGCTGCTGGTGCC
GGCGGCGGCGGCCGCCGAGGCGGGCCCGCGCCGTTCGTCGAGACGGCCCC
GATCATGCAGTTCGGCCGAAGACCGACCACCCGTGCCACATCGAGGAGAG
CAAGCGGCGGGACCGGGAGAAGTTCGGCGGCGGCGGCAGGAGAACCTGTG
AAGGCGGCAGGTTCGGTGGCACGCAAGGCTGTATCGATCGGCGGCAGCGG
CAGCGGCCGTGGTGGCGGTGGCGGCGCCGGAGTTGGAGGCGCCGGAGTCG
GAGGCGCCGGAGACAATCCGCCGGCGGGGCAACCAGAGGCCGACGACGGG
GAGGTGAGGCTCACGCGCGCTGAGTGGCAGTGCCTCCAGTACGAGGAGAC
GATCTCGTACGCGGTGAAGCACGCGAGCCAGCTCGCCCTGGCGGCGGCGT
CTTCCTCGTCCTCCTCTTCCTCCTCGGCCCCTGCTCCCGCCACGGCCACC
TTCGAAGAGAAACCCGGGGAGAGGGAAACGATGGTGGCCGCGCTTGCGGT
GGTCAAGGCCGCCCACGCCACGAGCCTGGCCCTGGCGGCGACGGGGGGGG
GGGACGCGGAGCAGCGCCAAGGGAACTCGGCGGCGGCGGCGTCCAGAGGG
GGCGTGTCCAAGACCCAGGAACCTGCCCGAGGCGGCGGCAGAGCAGGAGG
CTCGCCTGTTCGGGGCGGCGGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13567:162..1634-

>mRNA_H-canaliculatus_F_contig13567.2879.1 ID=mRNA_H-canaliculatus_F_contig13567.2879.1|Name=mRNA_H-canaliculatus_F_contig13567.2879.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2298bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13567:162..1634- (Hapterophycus canaliculatus Oshoro5f female)
GGGGGAAGAAGGGTTGGGGGTAGGCTCTCCTTTTCTTCCGCAGTGGGGAC
GGACGACGGGAGTAGCGGGGAAGGAAGCGGGGCTGCGGCTGCGGCGAGGC
ACGAGCGGGCCAGGGTTGCGGGGAGGGCTCCGACTAGGAGGGGGGAAGAA
GGGTTGGGGGTAGGCTCTCCTTTTCTTCCGCAGTGGGGACGGACGACGGG
AGTAGCGGGGAAGGAAGCGGGGCTGCGGCTGCGGCGAGGCACGAGCGGGC
CAGGGTTGCGGGGAGGGCTCCGACTAGGAGACGAGCGTCTACGCCGGGCA
CCATCACCGCTCAGCAGGCGAGGCAGCAAGCCTCTTCCACGAGAAATGCG
ATGCGACCCCCGCCGCCCGCCGGAACGACCCCGGCAAGCGCAGCCCTGAC
CGGCCGCGCCTCTAGGTCGTCGACAGCGGCGGCGGCCGGCGGTGCGGGAG
GAGCAGGCGAAGCCGCCGCGGGGGGTCCGAGAAGAACACGGAGTCCTTTG
GCTGGCACGCCGATGGATGTGGACAGTCCGGCCGGCGGCGGAGGCGGTGA
AAGCGTCATGTCGACCCGAAGGAGGTCGAGGGAATCCAGGGACGCGCCCA
CTCCGGCTGCTGGTGCCGGCGGCGGCGGCCGCCGAGGCGGGCCCGCGCCG
TTCGTCGAGACGGCCCCGATCATGCAGTTCGGCCGAAGACCGACCACCCG
TGCCACATCGAGGAGAGCAAGCGGCGGGACCGGGAGAAGTTCGGCGGCGG
CGGCAGGAGAACCTGTGAAGGCGGCAGGTTCGGTGGCACGCAAGGCTGTA
TCGATCGGCGGCAGCGGCAGCGGCCGTGGTGGCGGTGGCGGCGCCGGAGT
TGGAGGCGCCGGAGTCGGAGGCGCCGGAGACAATCCGCCGGCGGGGCAAC
CAGAGGCCGACGACGGGGAGGTGAGGCTCACGCGCGCTGAGTGGCAGTGC
CTCCAGTACGAGGAGACGATCTCGTACGCGGTGAAGCACGCGAGCCAGCT
CGCCCTGGCGGCGGCGTCTTCCTCGTCCTCCTCTTCCTCCTCGGCCCCTG
CTCCCGCCACGGCCACCTTCGAAGAGAAACCCGGGGAGAGGGAAACGATG
GTGGCCGCGCTTGCGGTGGTCAAGGCCGCCCACGCCACGAGCCTGGCCCT
GGCGGCGACGGGGGGGGGGGACGCGGAGCAGCGCCAAGGGAACTCGGCGG
CGGCGGCGTCCAGAGGGGGCGTGTCCAAGACCCAGGAACCTGCCCGAGGC
GGCGGCAGAGCAGGAGGCTCGCCTGTTCGGGGCGGCGGGACGAGCGTCTA
CGCCGGGCACCATCACCGCTCAGCAGGCGAGGCAGCAAGCCTCTTCCACG
AGAAATGCGATGCGACCCCCGCCGCCCGCCGGAACGACCCCGGCAAGCGC
AGCCCTGACCGGCCGCGCCTCTAGGTCGTCGACAGCGGCGGCGGCCGGCG
GTGCGGGAGGAGCAGGCGAAGCCGCCGCGGGGGGTCCGAGAAGAACACGG
AGTCCTTTGGCTGGCACGCCGATGGATGTGGACAGTCCGGCCGGCGGCGG
AGGCGGTGAAAGCGTCATGTCGACCCGAAGGAGGTCGAGGGAATCCAGGG
ACGCGCCCACTCCGGCTGCTGGTGCCGGCGGCGGCGGCCGCCGAGGCGGG
CCCGCGCCGTTCGTCGAGACGGCCCCGATCATGCAGTTCGGCCGAAGACC
GACCACCCGTGCCACATCGAGGAGAGCAAGCGGCGGGACCGGGAGAAGTT
CGGCGGCGGCGGCAGGAGAACCTGTGAAGGCGGCAGGTTCGGTGGCACGC
AAGGCTGTATCGATCGGCGGCAGCGGCAGCGGCCGTGGTGGCGGTGGCGG
CGCCGGAGTTGGAGGCGCCGGAGTCGGAGGCGCCGGAGACAATCCGCCGG
CGGGGCAACCAGAGGCCGACGACGGGGAGGTGAGGCTCACGCGCGCTGAG
TGGCAGTGCCTCCAGTACGAGGAGACGATCTCGTACGCGGTGAAGCACGC
GAGCCAGCTCGCCCTGGCGGCGGCGTCTTCCTCGTCCTCCTCTTCCTCCT
CGGCCCCTGCTCCCGCCACGGCCACCTTCGAAGAGAAACCCGGGGAGAGG
GAAACGATGGTGGCCGCGCTTGCGGTGGTCAAGGCCGCCCACGCCACGAG
CCTGGCCCTGGCGGCGACGGGGGGGGGGGACGCGGAGCAGCGCCAAGGGA
ACTCGGCGGCGGCGGCGTCCAGAGGGGGCGTGTCCAAGACCCAGGAACCT
GCCCGAGGCGGCGGCAGAGCAGGAGGCTCGCCTGTTCGGGGCGGCGGG
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