mRNA_H-canaliculatus_F_contig13563.2878.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13563.2878.1
Unique NamemRNA_H-canaliculatus_F_contig13563.2878.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13563.2878.1 vs. uniprot
Match: D8LP26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP26_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 1.450e-49
Identity = 78/91 (85.71%), Postives = 83/91 (91.21%), Query Frame = 1 
Query:    1 QVLRSIPGDRLMLETDAPWCEIRPSHAGSGMIKTAIPARKKEKFEAGVCVKGRQEPCHIVQVLEVAAAARGDEPGALAEQALENTRRLFFP 273
            +V+RSIPGD+LMLETDAPWCEIRPSHAGS  IKT IP RKKEKFEAG CVKGRQEPCHIVQVLEV AAARG+EPG LA QALENT+RLFFP
Sbjct:  195 EVVRSIPGDKLMLETDAPWCEIRPSHAGSKTIKTTIPCRKKEKFEAGFCVKGRQEPCHIVQVLEVVAAARGEEPGELAAQALENTKRLFFP 285
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BLAST of mRNA_H-canaliculatus_F_contig13563.2878.1 vs. uniprot
Match: A0A6H5JJT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJT5_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 1.110e-47
Identity = 77/91 (84.62%), Postives = 82/91 (90.11%), Query Frame = 1 
Query:    1 QVLRSIPGDRLMLETDAPWCEIRPSHAGSGMIKTAIPARKKEKFEAGVCVKGRQEPCHIVQVLEVAAAARGDEPGALAEQALENTRRLFFP 273
            +V+RSIPGD+LMLETDAPWCEIRPSHAGS  IKT IP RKKEKFE G CVKGRQEPCHIVQVLEV AAARG+EPG LA QALENT+RLFFP
Sbjct:  318 EVVRSIPGDKLMLETDAPWCEIRPSHAGSKTIKTTIPCRKKEKFEVGFCVKGRQEPCHIVQVLEVVAAARGEEPGELAAQALENTKRLFFP 408
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BLAST of mRNA_H-canaliculatus_F_contig13563.2878.1 vs. uniprot
Match: A0A6P4YQ79_BRABE (putative deoxyribonuclease TATDN1 isoform X1 n=6 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YQ79_BRABE)

HSP 1 Score: 128 bits (321), Expect = 3.100e-34
Identity = 55/92 (59.78%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:    1 QVLRSIPGDRLMLETDAPWCEIRPSHAGSGMIKTAIPARKKEKFEAGVCVKGRQEPCHIVQVLEVAAAARGDEPGALAEQALENTRRLFFPD 276
            + + SIP DRLM+ETDAPWCE+RPSHAG+ ++KT  P +KKEK+E G CVK R EPCHIVQ+LEV A AR ++   LA+    NT+++FFPD
Sbjct:  213 ETMCSIPSDRLMIETDAPWCEVRPSHAGAKLLKTTFPTKKKEKWEKGHCVKSRNEPCHIVQILEVMAGARNEDVTDLADVLYNNTKKVFFPD 304
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BLAST of mRNA_H-canaliculatus_F_contig13563.2878.1 vs. uniprot
Match: UPI001455153B (putative deoxyribonuclease TATDN1 isoform X1 n=2 Tax=Asterias rubens TaxID=7604 RepID=UPI001455153B)

HSP 1 Score: 127 bits (319), Expect = 6.150e-34
Identity = 57/90 (63.33%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:    1 QVLRSIPGDRLMLETDAPWCEIRPSHAGSGMIKTAIPARKKEKFEAGVCVKGRQEPCHIVQVLEVAAAARGDEPGALAEQALENTRRLFF 270
            + + S+P DRL++ETDAPWCEIRPSHAGS  IKT  P++KKEK+E G CVK R EPCHI+QVLEV AAAR ++   LA+  L+NT +LFF
Sbjct:  215 EAMCSVPSDRLLIETDAPWCEIRPSHAGSKHIKTTYPSKKKEKWEEGFCVKSRNEPCHIIQVLEVMAAAREEDIEELAKNLLDNTEKLFF 304
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BLAST of mRNA_H-canaliculatus_F_contig13563.2878.1 vs. uniprot
Match: A0A7M5X8D0_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5X8D0_9CNID)

HSP 1 Score: 127 bits (319), Expect = 6.700e-34
Identity = 55/90 (61.11%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:    1 QVLRSIPGDRLMLETDAPWCEIRPSHAGSGMIKTAIPARKKEKFEAGVCVKGRQEPCHIVQVLEVAAAARGDEPGALAEQALENTRRLFF 270
            +VL++IP +RLM+ETDAPWCE++ +HAGS  +KT    +KKEK+EAG CVK R EPCHI+QVLE+ AA RG++P  LAE   ENT +LFF
Sbjct:  219 EVLKTIPSERLMVETDAPWCEVKNTHAGSKYVKTKFQTKKKEKWEAGCCVKSRNEPCHIIQVLEIMAAVRGEDPKELAEIMFENTEKLFF 308
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BLAST of mRNA_H-canaliculatus_F_contig13563.2878.1 vs. uniprot
Match: A0A023GBY8_AMBTT (Putative tatd dnase domain protein (Fragment) n=1 Tax=Amblyomma triste TaxID=251400 RepID=A0A023GBY8_AMBTT)

HSP 1 Score: 123 bits (308), Expect = 1.320e-33
Identity = 55/90 (61.11%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:    4 VLRSIPGDRLMLETDAPWCEIRPSHAGSGMIKTAIPARKKEKFEAGVCVKGRQEPCHIVQVLEVAAAARGDEPGALAEQALENTRRLFFP 273
            V  +IPGDRL++ETD PWCEIRP+HAG+ +I+T+ PA+KKE+FE G  VKGR EP ++VQVLEV A  RG++P  LA Q   NT  LFFP
Sbjct:   85 VAATIPGDRLLIETDCPWCEIRPTHAGAKLIRTSFPAKKKERFEPGFMVKGRNEPANLVQVLEVLAGIRGEDPDTLAAQVHANTCHLFFP 174
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BLAST of mRNA_H-canaliculatus_F_contig13563.2878.1 vs. uniprot
Match: UPI00077A62E7 (putative deoxyribonuclease TATDN1 isoform X1 n=3 Tax=Acropora TaxID=6127 RepID=UPI00077A62E7)

HSP 1 Score: 125 bits (313), Expect = 5.680e-33
Identity = 56/90 (62.22%), Postives = 72/90 (80.00%), Query Frame = 1 
Query:    1 QVLRSIPGDRLMLETDAPWCEIRPSHAGSGMIKTAIPARKKEKFEAGVCVKGRQEPCHIVQVLEVAAAARGDEPGALAEQALENTRRLFF 270
            +V+++IP DRL+LETDAPWC+IRP+HAG   I+T   ++KKEK+E GVCVKGR EP HIVQVLEV AA+RG++  +LAE   +NT  LFF
Sbjct:  223 EVMKTIPSDRLLLETDAPWCDIRPTHAGFKHIRTKFESKKKEKWEKGVCVKGRNEPAHIVQVLEVVAASRGEDAQSLAENIYDNTLNLFF 312
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BLAST of mRNA_H-canaliculatus_F_contig13563.2878.1 vs. uniprot
Match: UPI0009E2C672 (putative deoxyribonuclease TATDN1 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E2C672)

HSP 1 Score: 122 bits (305), Expect = 2.350e-32
Identity = 53/90 (58.89%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:    1 QVLRSIPGDRLMLETDAPWCEIRPSHAGSGMIKTAIPARKKEKFEAGVCVKGRQEPCHIVQVLEVAAAARGDEPGALAEQALENTRRLFF 270
            +V+++IP ++L+LETDAPWC+IRP+HAG   +KT   +RKKEK+EAG+CVKGR EP +I+QVLEV A +RG++  +LAE   ENT +LFF
Sbjct:  163 EVMKTIPSEKLLLETDAPWCDIRPTHAGFKHVKTKFESRKKEKWEAGLCVKGRNEPANIIQVLEVVAGSRGEDVHSLAETVYENTLKLFF 252
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BLAST of mRNA_H-canaliculatus_F_contig13563.2878.1 vs. uniprot
Match: A0A293LX68_ORNER (Uncharacterized protein (Fragment) n=2 Tax=Ornithodoros TaxID=6937 RepID=A0A293LX68_ORNER)

HSP 1 Score: 123 bits (308), Expect = 3.140e-32
Identity = 54/94 (57.45%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:    1 QVLRSIPGDRLMLETDAPWCEIRPSHAGSGMIKTAIPARKKEKFEAGVCVKGRQEPCHIVQVLEVAAAARGDEPGALAEQALENTRRLFFPDSA 282
            QV+ ++P DRL++ETD+PWCEIRP+HAG+ +++T  P +KKE+FE G  VKGR EP +IVQVLEV A AR ++   LA Q   NT RLFFP+ A
Sbjct:  218 QVVAALPSDRLLIETDSPWCEIRPTHAGAKLVRTTFPCKKKERFEPGFQVKGRNEPANIVQVLEVLAGARNEDADVLAAQVYRNTLRLFFPEEA 311
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BLAST of mRNA_H-canaliculatus_F_contig13563.2878.1 vs. uniprot
Match: L7M2A1_RHIPC (Putative deoxyribonuclease tatdn1 n=7 Tax=Ixodidae TaxID=6939 RepID=L7M2A1_RHIPC)

HSP 1 Score: 122 bits (307), Expect = 4.790e-32
Identity = 56/90 (62.22%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:    4 VLRSIPGDRLMLETDAPWCEIRPSHAGSGMIKTAIPARKKEKFEAGVCVKGRQEPCHIVQVLEVAAAARGDEPGALAEQALENTRRLFFP 273
            V  +IP DRL++ETD PWCEIRP+HAG+ +I+T+ PA+KKE+FE G  VKGR EP ++VQVLEV A  RG++P ALA Q   NT RLFFP
Sbjct:  213 VAAAIPRDRLLIETDCPWCEIRPTHAGAKLIRTSFPAKKKERFEPGFMVKGRNEPANLVQVLEVLAGIRGEQPDALALQVHANTCRLFFP 302
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13563.2878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP26_ECTSI1.450e-4985.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJT5_9PHAE1.110e-4784.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6P4YQ79_BRABE3.100e-3459.78putative deoxyribonuclease TATDN1 isoform X1 n=6 T... [more]
UPI001455153B6.150e-3463.33putative deoxyribonuclease TATDN1 isoform X1 n=2 T... [more]
A0A7M5X8D0_9CNID6.700e-3461.11Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A0A023GBY8_AMBTT1.320e-3361.11Putative tatd dnase domain protein (Fragment) n=1 ... [more]
UPI00077A62E75.680e-3362.22putative deoxyribonuclease TATDN1 isoform X1 n=3 T... [more]
UPI0009E2C6722.350e-3258.89putative deoxyribonuclease TATDN1 n=1 Tax=Orbicell... [more]
A0A293LX68_ORNER3.140e-3257.45Uncharacterized protein (Fragment) n=2 Tax=Ornitho... [more]
L7M2A1_RHIPC4.790e-3262.22Putative deoxyribonuclease tatdn1 n=7 Tax=Ixodidae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13563contigH-canaliculatus_F_contig13563:1772..2763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue6.5e-39
Seed eggNOG ortholog2880.D8LP26
Preferred nameTATDN1
KEGG koko:K03424
GOsGO:0000737,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006308,GO:0006309,GO:0006725,GO:0006807,GO:0006915,GO:0006921,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008219,GO:0008296,GO:0008408,GO:0009056,GO:0009057,GO:0009987,GO:0012501,GO:0016043,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0019439,GO:0022411,GO:0030262,GO:0031974,GO:0031981,GO:0033554,GO:0034599,GO:0034641,GO:0034655,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0070013,GO:0070887,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097194,GO:0140097,GO:1901360,GO:1901361,GO:1901575
EggNOG free text desc.hydrolase activity, acting on ester bonds
EggNOG OGsCOG0084@1,KOG3020@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size285
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929099.762983-CDS-H-canaliculatus_F_contig13563:1771..18731622929099.762983-CDS-H-canaliculatus_F_contig13563:1771..1873Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13563 1772..1873 -
1696845678.5434968-CDS-H-canaliculatus_F_contig13563:1771..18731696845678.5434968-CDS-H-canaliculatus_F_contig13563:1771..1873Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13563 1772..1873 -
1622929099.814391-CDS-H-canaliculatus_F_contig13563:2580..27631622929099.814391-CDS-H-canaliculatus_F_contig13563:2580..2763Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13563 2581..2763 -
1696845678.562745-CDS-H-canaliculatus_F_contig13563:2580..27631696845678.562745-CDS-H-canaliculatus_F_contig13563:2580..2763Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13563 2581..2763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13563.2878.1prot_H-canaliculatus_F_contig13563.2878.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13563 1772..2763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13563.2878.1

>prot_H-canaliculatus_F_contig13563.2878.1 ID=prot_H-canaliculatus_F_contig13563.2878.1|Name=mRNA_H-canaliculatus_F_contig13563.2878.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=95bp
QVLRSIPGDRLMLETDAPWCEIRPSHAGSGMIKTAIPARKKEKFEAGVCV
KGRQEPCHIVQVLEVAAAARGDEPGALAEQALENTRRLFFPDSA*
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mRNA from alignment at H-canaliculatus_F_contig13563:1772..2763-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13563.2878.1 ID=mRNA_H-canaliculatus_F_contig13563.2878.1|Name=mRNA_H-canaliculatus_F_contig13563.2878.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=992bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13563:1772..2763- (Hapterophycus canaliculatus Oshoro5f female)
CAGGTCCTGCGCTCGATTCCCGGGGACAGGCTGATGCTGGAGACCGACGC
TCCATGGTGCGAGATCCGACCCTCGCACGCCGGGTCCGGGATGATCAAGA
CGGCCATCCCGGCCCGAAAGAAAGAGAAGTTCGAGGCCGGCGTCTGCGTC
AAGGGCCGACAAGAACCGTGTCACATAGTGCAGGTGTGTGTCCGTGTGGG
GGGTGGTGCATCGTCGTTGTTGCATCAGCTGATACTCACGAGCGGGTGTC
TCCGTGCGCTCGTGTCAGCGGTTTTTTGTTGGATTATGCGTCCGCGTCTT
GCCCACGGCTATTGCCGCTGCCGCTGCCGCCACCTTTGCTGTTCCTTCTG
TTCTTGGTGTCGTTGGTGTTGCTACTCTGTTTGACGGTCGTTGTGGCGGC
CTGGGCAGTCGCTTTCATCGTTTCCAGAGACCGACAGGAGACTGTAAACG
GAGCGCACCCCTTGCTCACTAGTCGCGGTTCAGTTGCGAGTCTACCTCAA
GTACGGAGCTGGCGCGCGTGAATTGGAGTTCCTGTGGCTCATACGTGCGT
CTTCCCTGGCCACCAGCTAGGCCCTTCCTTGGCGTCTGATGCTGCCCAAG
CACCGTCTTAACACAGACTCGCAAGACGTTACGTGTTTCACTCACCAGAC
AGCTAGGTCTGTGGTCCTACAAGCGCATCGTAGTTTTTGTATCTTGTTAC
CCTTGGTGCAAAAGGAACGTGGGTTCCTCTCCCTTTCTGGTCATCCACCA
ACGCCACTGGACTGCAGAATCAACGAAAACCGGGCGAAACTGAGTTGTCC
TCCCCCCCCCTCTCCCACCCGACGTCCCAACCCCACTCCCCGACACTGCC
CCGCTCCGCCGCGCACACGCAATTACGCACGCGCCCCTAGGTTTTAGAGG
TTGCCGCAGCTGCGAGGGGTGACGAGCCCGGCGCCCTCGCGGAACAGGCC
CTGGAAAACACGAGGCGTCTCTTCTTTCCGGACAGTGCTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13563:1772..2763-

>mRNA_H-canaliculatus_F_contig13563.2878.1 ID=mRNA_H-canaliculatus_F_contig13563.2878.1|Name=mRNA_H-canaliculatus_F_contig13563.2878.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=570bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13563:1772..2763- (Hapterophycus canaliculatus Oshoro5f female)
CAGGTCCTGCGCTCGATTCCCGGGGACAGGCTGATGCTGGAGACCGACGC
TCCATGGTGCGAGATCCGACCCTCGCACGCCGGGTCCGGGATGATCAAGA
CGGCCATCCCGGCCCGAAAGAAAGAGAAGTTCGAGGCCGGCGTCTGCGTC
AAGGGCCGACAAGAACCGTGTCACATAGTGCAGCAGGTCCTGCGCTCGAT
TCCCGGGGACAGGCTGATGCTGGAGACCGACGCTCCATGGTGCGAGATCC
GACCCTCGCACGCCGGGTCCGGGATGATCAAGACGGCCATCCCGGCCCGA
AAGAAAGAGAAGTTCGAGGCCGGCGTCTGCGTCAAGGGCCGACAAGAACC
GTGTCACATAGTGCAGGTTTTAGAGGTTGCCGCAGCTGCGAGGGGTGACG
AGCCCGGCGCCCTCGCGGAACAGGCCCTGGAAAACACGAGGCGTCTCTTC
TTTCCGGACAGTGCTTGAGTTTTAGAGGTTGCCGCAGCTGCGAGGGGTGA
CGAGCCCGGCGCCCTCGCGGAACAGGCCCTGGAAAACACGAGGCGTCTCT
TCTTTCCGGACAGTGCTTGA
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