mRNA_H-canaliculatus_F_contig1356.2876.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1356.2876.1
Unique NamemRNA_H-canaliculatus_F_contig1356.2876.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1356.2876.1 vs. uniprot
Match: A0A6H5KSQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSQ9_9PHAE)

HSP 1 Score: 600 bits (1548), Expect = 4.430e-203
Identity = 311/368 (84.51%), Postives = 329/368 (89.40%), Query Frame = 1 
Query:  604 GAVALAAARRGTGERERLVASESPVEEFVVRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPSCSFPKIVASHGGPQ--------------SNAMVAIAAVVASKPGSSFVYYTKPVPRWLRKNPVGNFAKAIMLGAEIMEVHTNDYKRIFGGTDGPGVDACAEVVPKEALFLPQGGADAAAEEGVSMLADEIIEYWDENGPPGKELRVVLPAGTGTTALFLARYLVPEGIPVYTVPCAGDSGYLQRQMAKVDRESGGVGIFPQFVQQNR-RKAAFGAPKMEFLEVWRELDKLGLFVDLLYAAPTWEVIMDSWDAPVKSPVSVTPGPALDSEPQLMYVHCGGLEGVSSQLTRYKHLGLVQDGQLQ 1662
            GAVALAAA+RG GER RLVASESPVEEFV+RGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTP+ SFP++VASHGGPQ              SNAMVAIAAVVASKPGSSFVYYTKPVP+WLR+NPVGNFA+ I LGAEIMEVHT DYKRIFGG DGPG  + +EVVP+EALFLPQGGADAAAEEGVSMLADEII+YWDENGPPGKELRV+LPAGTGTTALFLAR+LVPEGIPV TVPCAGDSGYL RQMAKVDR SGGVGIFPQ VQ+ R RKAAFGAPK E LEVWRE+DK GLFVDLLYAAP WEVIMDSWD+   SPVSVTPGP +DSEPQLMYVHCGGLEGVSSQLTRYKH GLVQDGQLQ
Sbjct:   10 GAVALAAAKRGPGERGRLVASESPVEEFVIRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPASSFPEVVASHGGPQARDTRKHRARGYRISNAMVAIAAVVASKPGSSFVYYTKPVPKWLRRNPVGNFARTIALGAEIMEVHTEDYKRIFGGADGPGA-SYSEVVPEEALFLPQGGADAAAEEGVSMLADEIIDYWDENGPPGKELRVILPAGTGTTALFLARHLVPEGIPVLTVPCAGDSGYLYRQMAKVDRASGGVGIFPQCVQETRKRKAAFGAPKRELLEVWREMDKAGLFVDLLYAAPAWEVIMDSWDSS-GSPVSVTPGPPIDSEPQLMYVHCGGLEGVSSQLTRYKHQGLVQDGQLQ 375
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1356.2876.1 vs. uniprot
Match: A0A835YPC9_9STRA (Tryptophan synthase beta subunit-like PLP-dependent enzyme n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPC9_9STRA)

HSP 1 Score: 320 bits (821), Expect = 5.550e-96
Identity = 189/385 (49.09%), Postives = 231/385 (60.00%), Query Frame = 1 
Query:  658 VASESPVEEFVVRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPSCSFPKIVASHGGPQSNAMVAIAAVVASKPGSSFVYYTKPVPRWLRKNPVGNFAKAIMLGAEIMEVHTNDYKRIFGGTDGPGVDACAEVVPKEALFLPQGGADAAAEEGVSMLADEIIEYWDENGPPG----KELRVVLPAGTG---TTALFLARYLVPEG-IPVYTVPCAGDSGYLQRQMAKV------------DRESG-----------GVGIFPQFVQQNRRKAAFGAPKMEFLEVWRELDKLGLFVDLLYAAPTWEVIMDSWDAPVKSPVSVTPGPALDSEP-------------------QLMYVHCGGLEGVSSQLTRYKHLGLVQDGQLQ 1662
            + ++SPV+ F +RGR VLVKRDDKMRL  SG+SGNKARKLY  N TP+   P +V SHGG QSNAM+A+AAV  SK G  F YYTK V RWLR+ P GNFA+A+ L  EI+EVH  DY   FGG+DGP      ++ P+ A+++PQGGA A AE G+ MLADEI EYW ++        KEL VV+PAGTG   TTA FL R+L P G I V TVPC G + YL RQM +V            D  S            G    P  +++      FGAP+ E L VW+EL  LGLFVDLLYAA  WEV+ ++W A        +P    D+E                     LMYVHCGGLEGVSSQLTRY+HLGL++   +Q
Sbjct:    1 MVTQSPVDTFTIRGRTVLVKRDDKMRLKGSGISGNKARKLYTFNATPADQLPDLVVSHGGAQSNAMLALAAVATSK-GKRFRYYTKAVGRWLRRTPSGNFARAMALNTEIIEVHAEDYASAFGGSDGPPRAPSPDICPEGAMWVPQGGACADAEAGLKMLADEIAEYWGQHSGEREGREKELVVVVPAGTGNGSTTAAFLNRHLRPHGNISVATVPCVGGADYLSRQMRRVLGAPLEPLPEILDGASALSSSTAAALNTGKRGAPSSLRKRSGTPVFGAPRAELLAVWQELKDLGLFVDLLYAARAWEVLFETWAA------DTSPSAGADAEGGGXXXXXXXXRGARLLEGRTLMYVHCGGLEGVSSQLTRYRHLGLLEADAVQ 378
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1356.2876.1 vs. uniprot
Match: A0A7S2SJY6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJY6_9STRA)

HSP 1 Score: 298 bits (762), Expect = 1.530e-87
Identity = 172/350 (49.14%), Postives = 214/350 (61.14%), Query Frame = 1 
Query:  661 ASESPVEEFVVRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPSCSFPKIVASHGGPQSNAMVAIAAVVASKPGSSFVYYTKPVPRWLRKNPVGNFAKAIMLGAEIMEVHTNDYKRIFGGTDGPGVDACAEVVPKEALFLPQGGADAAAEEGVSMLADEIIEYW-------------DENGPPGKELR--VVLPAGTGTTALFLARYLVPEGIPVYTVPCAGDSGYLQRQMAKVDRESGGVGIFPQFVQQNRRKAAFGAPKMEFLEVWREL-DKLGLFVDLLYAAPTWEVIMDSW-DAPVKSPVSVTPGPALDSEPQLMYVHCGGLEGVSSQLTRYKHLGLVQDGQL 1659
            A  S +   +VR RR+LVKRDD  RLA  G+SGNKARKL  LN+  S + P  +ASHGGPQSNAM+A+AAV   K G  F+Y+TK +PRWLR+NP GNF +A  LG E+ ++    Y+++FGG DG         +P+EAL++PQGGA   AE G ++LA EI E W             +     G++ R  VV+ AGTGTTALFLAR+L P  I V  VPC G   YLQRQM K+D ++GGVGIFP  ++  R    FG P+   L VW  L D   L VDL+Y A  WEV+ DSW D P          P L S  Q++Y HCGGLEG SSQL RYK  GL+  G L
Sbjct:   39 ARRSSMTVHIVRNRRILVKRDDLCRLAGCGVSGNKARKLLTLNRASSDAIPDTIASHGGPQSNAMLALAAVANFK-GKRFIYFTKSLPRWLRQNPSGNFLRATALGMELRQLSPTKYQQLFGGADGIAEQPQDLDLPEEALWVPQGGATIDAELGCAVLAKEIHEEWRTSDAFAQFREPLNGENADGRQQRLCVVVAAGTGTTALFLARWLTPLNISVVAVPCLGSPAYLQRQMEKLDEQTGGVGIFPHVLEPPRGSRPFGKPRKGLLSVWNYLRDSATLTVDLIYGARAWEVLFDSWKDLP----------PPL-SGAQIIYYHCGGLEGTSSQLARYKREGLLPSGWL 376
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1356.2876.1 vs. uniprot
Match: A0A7S2DJY8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DJY8_9STRA)

HSP 1 Score: 296 bits (759), Expect = 4.460e-87
Identity = 168/349 (48.14%), Postives = 217/349 (62.18%), Query Frame = 1 
Query:  610 VALAAARRGTGERERLVASESPVEEFVVRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPSCSFPKIVASHGGPQSNAMVAIAAVV-ASKPGSSFVYYTKPVPRWLRKNPVGNFAKAIMLGAEIMEVHTNDYKRIFGGTDGPGVDACAEVVPKEALFLPQGGADAAAEEGVSMLADEIIEYWDENGP-PGKELRVVLPAGTGTTALFLARYLVPEGIPVYTVPCAGDSGYLQRQMAKVDRESGGVGIFPQFVQQNRRKAAFGAPKMEFLEVWRELDKLGLFVDLLYAAPTWEVIMDSWDAPVKSPVSVTPGPALDSEPQLMYVHCGGLEGVSSQLTRYKHLGLVQD 1650
            V  ++ R  T    R   + S VE   VRGRR+ VKRDDK RL E+GL GNKARKLY+LN      FP+ + SHGGPQSNAMVA+AAVV   +P S+F YYTKP+PRWLR NP GNFA+AI LG EI  +   +Y+ +FGG            +P  AL++PQGGA A AE G+  LADEI    + +    G  + VV+ +G+G TALFLAR+L P GI V  VPC    G   RQM ++D  +G  GI P  ++  +    FG P    L+ W E+ ++GL+VDLLY A TW+V+++ WDA    P S+ PG        ++Y HCGG+EGVS+QL RYKH GLV +
Sbjct:   38 VLFSSTREDTAPIRREDVAPSRVEAVEVRGRRIFVKRDDKYRLPETGLCGNKARKLYSLNNLSP--FPQDLVSHGGPQSNAMVALAAVVHRHQPSSTFTYYTKPIPRWLRNNPSGNFARAISLGTEIRTLSVAEYQDLFGGLGAISGAPPGLPLPPGALWVPQGGASAEAEPGLIRLADEIYAQVEASSELAGGPVNVVVASGSGATALFLARHLHPHGIGVTAVPCVMRGGAFLRQMERLDEMTGSHGILPSILE-GKEHIPFGQPSPLLLDAWTEMKQIGLYVDLLYGARTWQVLLEHWDAG-SMPPSLGPGT------NVLYYHCGGIEGVSTQLNRYKHAGLVSE 376
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1356.2876.1 vs. uniprot
Match: D7G221_ECTSI (Similar to 1-Aminocyclopropane-1-Carboxylate Deaminase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G221_ECTSI)

HSP 1 Score: 288 bits (738), Expect = 6.670e-85
Identity = 198/384 (51.56%), Postives = 228/384 (59.38%), Query Frame = 1 
Query:   13 MLCPRLSRPSLVSLVAAGLLAPSRGIAVYGGARSCLFFATGAPPRPSPSAARHHRQRRSLPARGGRVADRRGPDVSLSSSWS---------SSPAAHEEQGQSGR---GPLQGGSFRAGGAADASNGXXXXXXXXXXXXXXXXXXXXXXXXXXLTVREAAGAASQQGQVRTXXXXXXXXXXXXXXXXXX--YGGDSRMSVEEREREARAVQGAVALAAARRGTGERERLVASESPVEEFVVRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPSCSFPKIVASHGGPQSNAMVAIAAVVASKPGSSFVYYTKPVPRWLRKNPVGNFAKAIMLGAEIMEVHTNDYKRIFGGTDGPGVDACAEVVPKEALFLPQGGADAAAEE 1122
            M+C +LSRPSL+SLVAAGLL PSRGIAV     +C                  HR                        SWS         SSP++   +G++GR   G  +      GG      G                           T R ++   ++Q + RT                    +GGDS  S+ E EREA+ VQGAVALAAA+RG GER RLVASESPVEEFV+RGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTP+ SFP         +SNAMVAIAAVVASKPGSSF+YYTKPVP+WLR+NPVGNFA+ I LGAEIMEVHT DYKRIFGG DGPG  + ++VVP+EALFLPQGGADAAAEE
Sbjct:    1 MMCVQLSRPSLLSLVAAGLLTPSRGIAVG----NCG----------------DHRHXXXXXX----XXXXXXXXXXXXXSWSGGTHGLRLLSSPSSGAHEGETGRRSSGSNEQQERHQGGGRSGDGGTRRTHD---------------------TGRPSSSLPARQREARTRRHRGRQGGGWGGDGDRQEDWGGDSGRSLVEEEREAQEVQGAVALAAAKRGPGERGRLVASESPVEEFVIRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPASSFP---------ESNAMVAIAAVVASKPGSSFIYYTKPVPKWLRRNPVGNFARTIALGAEIMEVHTEDYKRIFGGADGPGA-SYSDVVPEEALFLPQGGADAAAEE 329
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1356.2876.1 vs. uniprot
Match: A0A7S0GYQ1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GYQ1_9EUKA)

HSP 1 Score: 261 bits (667), Expect = 4.010e-74
Identity = 152/341 (44.57%), Postives = 202/341 (59.24%), Query Frame = 1 
Query:  664 SESPVEEFVVRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPSCSFPKIVASHGGPQSNAMVAIAAVVASKPGSSFVYYTKPVPRWLRKNPVGNFAKAIMLGAEIMEVHTNDYKRIFGGTDGPGVD--ACAEVVP--------KEALFLPQGGADAAAEEGVSMLADEIIEYWDENG-PPGKELRVVLPAGTGTTALFLARYLVPE--------GIPVYTVPCAGDSGYLQRQMAKVDRESGGVGIFPQFVQQNRRKAAFGAPKMEFLEVWRELDKLGLFVDLLYAAPTWEVIMDSWDAPVKSPVSVTPGPALDSEPQLMYVHCGGLEGVSSQLTRYK 1629
            + SPVE F +RGR V VKRDD +RL  SG+SGNKARKL +L+  P+  FP I+ASHGG QSNAM+A+A +  +K GS F Y TK +P+ L+ NP GN+ +A+ +  +   +  +DY   FG    P ++  A    +P        +  L++PQGGA A AE+GV  LADEI  +W  +G P G+ L VVLPAGTGTTALFLAR L            + V+ VPC G + YL+ QM  +D  SGG  IFP+ ++   R+  F  P      +W +L K GL VDL+YA P+WE + DSW+                S   ++YVH GGLEGVSS L RY+
Sbjct:   59 ASSPVELFSIRGRNVYVKRDDLLRLPGSGISGNKARKLASLDAIPASEFPSIMASHGGIQSNAMLAMAKLAKAK-GSKFKYITKSIPKHLKANPSGNYKEALSMDTQFDSLKPSDYDTYFG-LSAPAIERGATPPCIPGLDYLRATENLLWIPQGGACAVAEDGVCGLADEIWNWWIIHGVPSGETLNVVLPAGTGTTALFLARSLARRQNLDGTRTDVRVFAVPCVGSADYLKAQMTALDNASGGEKIFPRILKPKTRRQ-FATPHESLYTIWEQLKKAGLDVDLVYAPPSWEALFDSWNE------------VFTSNSTVLYVHTGGLEGVSSMLHRYQ 384
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1356.2876.1 vs. uniprot
Match: A0A7S1TP75_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TP75_9STRA)

HSP 1 Score: 253 bits (646), Expect = 4.690e-70
Identity = 151/379 (39.84%), Postives = 204/379 (53.83%), Query Frame = 1 
Query:  667 ESPVEEFVVRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPSCSFPKIVASHGGPQSNAMVAIAAVV-------------------------------------------ASKPGS-SFVYYTKPVPRWLRKNPVGNFAKAIMLGAEIMEVHTNDYKRIFGGTDGPGV---DACAEVVPKEALFLPQGGADAAAEEGVSMLADEIIEYWDENGPPGKELRVVLPAGTGTTALFLARYLVPEGIPVYTVPCAGDSGYLQRQMAKVDRESGGVGI---FPQFVQQNRRKAAFGAPKMEFLEVWRELDKLGLFVDLLYAAPTWEVIMDSWDAPVKSPVSVTPGPALDSEP-QLMYVHCGGLEGVSSQLTRYKHLGLVQD 1650
            ++ V+E ++RG  VLVKRDD++RL +SG+ GNK RKL+ LN      FP  +AS GGPQSNAMVA+AAV                                             + PG  SF Y+ K +PRWLR  P GNFA+A  LG  I E+   DYK  FGG  G      +   ++VP++ L++PQGGA   AE G+ +LA EI  YW E G   ++L V +PAGTGTTAL+LAR+L  E I V  + C G   Y   Q+  +DR +   G     P+ V    +   FG P+ E L++W EL   G++ DL YA   W+++ D+W+            PA   +  +LMYVH GGLEGVS+QLTRY+  G ++D
Sbjct:  113 DTDVDEVMIRGAPVLVKRDDQLRLLDSGVFGNKGRKLWWLNSRTEQQFPASLASFGGPQSNAMVALAAVADKYRRAAVARENATXXXXXXXXXXXXXXXXXXXXXXXSGSVRGENHPGEPSFHYFMKKLPRWLRSYPSGNFARAKALGMTIHELSPQDYKWYFGGKAGSAFKIPEELEKMVPRDTLWVPQGGAMFEAEPGLKILAQEIESYWAERGAANEKLTVAVPAGTGTTALYLARHLASESIRVVALSCCGPVSYTDAQVRALDRVTRAAGAPRAIPE-VMGGAQNVPFGEPRAELLDIWYELQDAGVYCDLTYAPRAWQILFDNWE-----------DPAFHGDGHRLMYVHTGGLEGVSTQLTRYRRAGFLKD 479
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1356.2876.1 vs. uniprot
Match: A0A7S2LIY0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LIY0_9STRA)

HSP 1 Score: 248 bits (634), Expect = 1.030e-68
Identity = 162/423 (38.30%), Postives = 224/423 (52.96%), Query Frame = 1 
Query:  670 SPVEEFVVRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKT-PSCSFPKIVASHGGPQSNAMVAIAAVVASK---------------------------------------------------------------------PGSSFVYYTKPVPRWLRKNPVGNFAKAIMLGAEIMEVHTNDYKRIFGGTDGPGVDACAEV---VPKEALFLPQGGADAAAEEGVSMLADEIIEYWDENGPPGKELRVVLPAGTGTTALFLARYLV--------PEGIPVYTVPCAGDSGYLQRQMAKVDRESGGVG--------IFPQFVQQNRRKA--AFGAPKMEFLEVWRELDK-LGLFVDLLYAAPTWEVIMDSWDAPVKSPVSVTPGPALDSEPQLMYVHCGGLEGVSSQLTRYKHLGLVQDGQLQ 1662
            SP+E  +V  RRV VKRDD +RL  S  SGNKARK+  L +  P+  FP +V S+GGPQSNAM+A+AA+ A+K                                                                     P   F+YYTK +PR+LR  P GN  +A  LG E++E+    Y+ +FGG +G   +  AE+   +P  ++++PQGG  ++A  GV  LA+EI  +W +NG     L VV+PAGTGTTA FL R L            I V  VPC GD  YL+RQM  +D+  GG G        + P+F ++N+ K    FG P  E L+V+RE++K  G+F+DLLY APTW +++    +  ++ V+V+  P +    Q+MY+HCGGLEGVSSQLTRYKH GL+   +LQ
Sbjct:   50 SPIETVMVNDRRVYVKRDDLLRLHGSNASGNKARKMLVLGEMIPAEDFPDVVVSYGGPQSNAMLALAAICAAKNSELLSNEQQQDEDDKDGLSELLADSENFSNDDDDYSIDGTTFKESEKSAQVRLQVMERPDEISLRTPEPRKRFIYYTKKLPRYLRNQPNGNLLRAKTLGMELVELSHAKYQELFGGPNGGPAEPPAELEPPIPGNSIWVPQGGFSSSAIPGVRRLANEIATFWIKNGEG--PLAVVVPAGTGTTAFFLQRELNRLSEEDQRQRDIRVIAVPCIGDDAYLRRQMMYLDKSCGGSGAVHDLPDILLPRF-RENQSKGYFTFGVPSKEILDVFREMEKDHGIFLDLLYGAPTWALLLPHLSS--QASVNVSGSPTVGK--QIMYLHCGGLEGVSSQLTRYKHQGLISPDELQ 465
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1356.2876.1 vs. uniprot
Match: A0A7S4CGT2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CGT2_9EUGL)

HSP 1 Score: 247 bits (630), Expect = 1.030e-68
Identity = 148/324 (45.68%), Postives = 199/324 (61.42%), Query Frame = 1 
Query:  670 SPVEEFVVRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPSCSFPKIVASHGGPQSNAMVAIAAVVASKPGSSFVYYTKPVPRWLRKNPVGNFAKAIMLGAEIMEVHTNDYKRIFGGTDGPGVDACAEVVPKEALFLPQGGADAAAEEGVSMLADEIIEYWDENGPPGKELRVVLPAGTGTTALFLARYLVPEGIP-VYTVPCAGDSGYLQRQMAKVDRESGGVGIFPQFVQQNRRKAAFGAPKMEFLEVWRELDKLGLFVDLLYAAPTWEVIMDSWDAPVKSPVSVTPGPALDSEPQLMYVHCGGLEGVSSQLTRYKHLG 1638
            S V+ F VRG ++ VKRDD++RL  + LSGNKARK+YAL++      P+++ S+GG QSNAM+A+A V  +K G    Y+TKP+PRWLR+ P GN+A+A+ LGA I  V +  YK  F  T  P      ++VP+ +L++PQGGA A AE GV  LA EI ++  +         VVLPAGTGTTALFLAR+L  EG+  V  +PC GD+ YLQ+QM++VD  SG    FP  +     +  FG P    LEVW  +   GL VDLLYA   WEV++ + DA  +          L    +++YVH GGLEGV + L RY+  G
Sbjct:  114 SGVDAFTVRGHKIFVKRDDQLRLPGTNLSGNKARKMYALHRWGPGQVPRMLVSYGGAQSNAMLALALVAKAK-GVPLTYFTKPIPRWLRETPSGNYAEALALGANITAVSSELYKS-FEQTGCP-----TQLVPEGSLWIPQGGACALAEPGVQNLASEIKDWLRDVQEFEDPFCVVLPAGTGTTALFLARHL--EGVAAVVAIPCVGDAEYLQQQMSRVDAASGDRREFPAILDMPPTRP-FGVPDPALLEVWETVRAAGLEVDLLYAPRAWEVLLQACDAQHR----------LVRGKKILYVHSGGLEGVGTMLARYRRQG 417
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1356.2876.1 vs. uniprot
Match: B8BUE7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUE7_THAPS)

HSP 1 Score: 238 bits (607), Expect = 3.410e-65
Identity = 154/438 (35.16%), Postives = 216/438 (49.32%), Query Frame = 1 
Query:  664 SESPVEEFVVRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPSCSFPKIVASHGGPQSNAMVAIAAVVASK-------------------------------------------------------------------------PGSSFVYYTKPVPRWLRKNPVGNFAKAIMLGAEIMEVHTNDYKRIFGGTDGPGVDACAEV---VPKEALFLPQGGADAAAEEGVSMLADEIIEYWDENGPPGKELRVVLPAGTGTTALFLAR---YLVPE------GIPVYTVPCAGDSGYLQRQMAKVDRESGGVGIFP------------QFVQQNRRKAA---FGAPKMEFLEVWRELDKLGLFVDLLYAAPTWEVIMDSW-----DAPVKSPVSVTPGPALDSEPQLMYVHCGGLEGVSSQLTRYKHLGLVQDGQLQ 1662
            S SPVE  ++R R V +K D+ + L  S LSGNKARK Y+LN  P+  FP  V S+GGPQSNAM+A+AA+V+SK                                                                         P   F+Y+TK +PR+L+K P GN  +A+ LG EI  +   +Y R+FGG  G  V A A++   +P ++L++PQGGA + A  G ++LA EI++YW  NG  G  L V LPAGT TTAL L R   +L+ +       I +  +PC GD  Y +RQM  +D+  GG G               ++    RR      FG P    L+ + E+++ GLF+DLLY AP+W +++  W     D P+             ++ Q+MYVH GGLEG++SQLTRYKH GL+    +Q
Sbjct:   28 SPSPVERLLIRDRLVYIKHDEYLHLPSSNLSGNKARKFYSLNNIPAGEFPDAVVSYGGPQSNAMLALAAIVSSKNWELGSKGDSNRNSNAIENNESQGKDPFWELDVLEEDIRIRALETDLIEVEDDITNTPSNQPKQSTPVASSSQPKKRFIYFTKSMPRYLKKYPNGNLLRALALGMEIRTLSHGEYNRLFGGLHGGSVMAPADLDPPIPGKSLWVPQGGACSVATPGSNLLAKEIVDYWKVNGK-GMPLAVCLPAGTCTTALLLHRSIQHLMEQQKTGTMDIRIVVIPCVGDDEYARRQMMSLDKAVGGRGKLKDLPWILRPRSDVEYGSARRRSGGYFRFGEPAKAILQAFDEMNEAGLFLDLLYGAPSWSLLLQHWRSRDEDCPI-------------ADRQVMYVHSGGLEGIASQLTRYKHKGLLDARTIQ 451
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1356.2876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSQ9_9PHAE4.430e-20384.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YPC9_9STRA5.550e-9649.09Tryptophan synthase beta subunit-like PLP-dependen... [more]
A0A7S2SJY6_9STRA1.530e-8749.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2DJY8_9STRA4.460e-8748.14Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D7G221_ECTSI6.670e-8551.56Similar to 1-Aminocyclopropane-1-Carboxylate Deami... [more]
A0A7S0GYQ1_9EUKA4.010e-7444.57Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S1TP75_9STRA4.690e-7039.84Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2LIY0_9STRA1.030e-6838.30Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S4CGT2_9EUGL1.030e-6845.68Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
B8BUE7_THAPS3.410e-6535.16Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1356contigH-canaliculatus_F_contig1356:9475..20042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score295.8
Seed ortholog evalue4.1e-77
Seed eggNOG ortholog2880.D7G221
EggNOG free text desc.1-aminocyclopropane-1-carboxylate deaminase activity
EggNOG OGs2RXQ8@2759,COG2515@1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSimilar to 1-Aminocyclopropane-1-Carboxylate Deaminase
Ec32 orthologEc-20_002800.1
Exons12
Model size3488
Cds size1653
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1356.2876.1prot_H-canaliculatus_F_contig1356.2876.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1356 11298..20030 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929099.5081034-UTR-H-canaliculatus_F_contig1356:9474..112971622929099.5081034-UTR-H-canaliculatus_F_contig1356:9474..11297Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1356 9475..11297 -
1696845678.3842478-UTR-H-canaliculatus_F_contig1356:9474..112971696845678.3842478-UTR-H-canaliculatus_F_contig1356:9474..11297Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1356 9475..11297 -
1622929099.7102978-UTR-H-canaliculatus_F_contig1356:20030..200421622929099.7102978-UTR-H-canaliculatus_F_contig1356:20030..20042Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1356 20031..20042 -
1696845678.5323577-UTR-H-canaliculatus_F_contig1356:20030..200421696845678.5323577-UTR-H-canaliculatus_F_contig1356:20030..20042Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1356 20031..20042 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929099.5218084-CDS-H-canaliculatus_F_contig1356:11297..113991622929099.5218084-CDS-H-canaliculatus_F_contig1356:11297..11399Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 11298..11399 -
1696845678.3950994-CDS-H-canaliculatus_F_contig1356:11297..113991696845678.3950994-CDS-H-canaliculatus_F_contig1356:11297..11399Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 11298..11399 -
1622929099.5374117-CDS-H-canaliculatus_F_contig1356:11619..116941622929099.5374117-CDS-H-canaliculatus_F_contig1356:11619..11694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 11620..11694 -
1696845678.4041457-CDS-H-canaliculatus_F_contig1356:11619..116941696845678.4041457-CDS-H-canaliculatus_F_contig1356:11619..11694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 11620..11694 -
1622929099.555104-CDS-H-canaliculatus_F_contig1356:12407..124731622929099.555104-CDS-H-canaliculatus_F_contig1356:12407..12473Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 12408..12473 -
1696845678.4141667-CDS-H-canaliculatus_F_contig1356:12407..124731696845678.4141667-CDS-H-canaliculatus_F_contig1356:12407..12473Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 12408..12473 -
1622929099.5712113-CDS-H-canaliculatus_F_contig1356:13008..131071622929099.5712113-CDS-H-canaliculatus_F_contig1356:13008..13107Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 13009..13107 -
1696845678.4245272-CDS-H-canaliculatus_F_contig1356:13008..131071696845678.4245272-CDS-H-canaliculatus_F_contig1356:13008..13107Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 13009..13107 -
1622929099.5843773-CDS-H-canaliculatus_F_contig1356:13615..137531622929099.5843773-CDS-H-canaliculatus_F_contig1356:13615..13753Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 13616..13753 -
1696845678.4409275-CDS-H-canaliculatus_F_contig1356:13615..137531696845678.4409275-CDS-H-canaliculatus_F_contig1356:13615..13753Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 13616..13753 -
1622929099.598995-CDS-H-canaliculatus_F_contig1356:14151..142141622929099.598995-CDS-H-canaliculatus_F_contig1356:14151..14214Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 14152..14214 -
1696845678.453178-CDS-H-canaliculatus_F_contig1356:14151..142141696845678.453178-CDS-H-canaliculatus_F_contig1356:14151..14214Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 14152..14214 -
1622929099.6160672-CDS-H-canaliculatus_F_contig1356:14537..146751622929099.6160672-CDS-H-canaliculatus_F_contig1356:14537..14675Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 14538..14675 -
1696845678.4635515-CDS-H-canaliculatus_F_contig1356:14537..146751696845678.4635515-CDS-H-canaliculatus_F_contig1356:14537..14675Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 14538..14675 -
1622929099.6345472-CDS-H-canaliculatus_F_contig1356:15053..151941622929099.6345472-CDS-H-canaliculatus_F_contig1356:15053..15194Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 15054..15194 -
1696845678.4793646-CDS-H-canaliculatus_F_contig1356:15053..151941696845678.4793646-CDS-H-canaliculatus_F_contig1356:15053..15194Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 15054..15194 -
1622929099.6452684-CDS-H-canaliculatus_F_contig1356:16658..167721622929099.6452684-CDS-H-canaliculatus_F_contig1356:16658..16772Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 16659..16772 -
1696845678.4882789-CDS-H-canaliculatus_F_contig1356:16658..167721696845678.4882789-CDS-H-canaliculatus_F_contig1356:16658..16772Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 16659..16772 -
1622929099.6560347-CDS-H-canaliculatus_F_contig1356:17047..171731622929099.6560347-CDS-H-canaliculatus_F_contig1356:17047..17173Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 17048..17173 -
1696845678.5014894-CDS-H-canaliculatus_F_contig1356:17047..171731696845678.5014894-CDS-H-canaliculatus_F_contig1356:17047..17173Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 17048..17173 -
1622929099.6736627-CDS-H-canaliculatus_F_contig1356:18486..189861622929099.6736627-CDS-H-canaliculatus_F_contig1356:18486..18986Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 18487..18986 -
1696845678.5123894-CDS-H-canaliculatus_F_contig1356:18486..189861696845678.5123894-CDS-H-canaliculatus_F_contig1356:18486..18986Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 18487..18986 -
1622929099.6909893-CDS-H-canaliculatus_F_contig1356:19939..200301622929099.6909893-CDS-H-canaliculatus_F_contig1356:19939..20030Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 19940..20030 -
1696845678.5227983-CDS-H-canaliculatus_F_contig1356:19939..200301696845678.5227983-CDS-H-canaliculatus_F_contig1356:19939..20030Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 19940..20030 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1356.2876.1

>prot_H-canaliculatus_F_contig1356.2876.1 ID=prot_H-canaliculatus_F_contig1356.2876.1|Name=mRNA_H-canaliculatus_F_contig1356.2876.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=551bp
MLCPRLSRPSLVSLVAAGLLAPSRGIAVYGGARSCLFFATGAPPRPSPSA
ARHHRQRRSLPARGGRVADRRGPDVSLSSSWSSSPAAHEEQGQSGRGPLQ
GGSFRAGGAADASNGGGGDGDGVSRPPRPPSSSSSSPPSPPLTVREAAGA
ASQQGQVRTRRHRGRQGSGWGGDGDGPYGGDSRMSVEEREREARAVQGAV
ALAAARRGTGERERLVASESPVEEFVVRGRRVLVKRDDKMRLAESGLSGN
KARKLYALNKTPSCSFPKIVASHGGPQSNAMVAIAAVVASKPGSSFVYYT
KPVPRWLRKNPVGNFAKAIMLGAEIMEVHTNDYKRIFGGTDGPGVDACAE
VVPKEALFLPQGGADAAAEEGVSMLADEIIEYWDENGPPGKELRVVLPAG
TGTTALFLARYLVPEGIPVYTVPCAGDSGYLQRQMAKVDRESGGVGIFPQ
FVQQNRRKAAFGAPKMEFLEVWRELDKLGLFVDLLYAAPTWEVIMDSWDA
PVKSPVSVTPGPALDSEPQLMYVHCGGLEGVSSQLTRYKHLGLVQDGQLQ
*
back to top

mRNA from alignment at H-canaliculatus_F_contig1356:9475..20042-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1356.2876.1 ID=mRNA_H-canaliculatus_F_contig1356.2876.1|Name=mRNA_H-canaliculatus_F_contig1356.2876.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=10568bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1356:9475..20042- (Hapterophycus canaliculatus Oshoro5f female)
TCTTGTTCCCGGATGCTTTGCCCTAGGCTGTCAAGACCGTCGCTCGTGAG
CTTGGTTGCAGCTGGTCTTCTAGCGCCTTCGAGAGGCATCGCAGTCTACG
GAGGTGATTGCACAACGACGAAATCGTCGAAATGAGCGAACAAAGATGCG
GCGGAATCATGTTCGATCCTCGCCGACTCGCCGATGTCGTTACTCTGGCG
CTCTGTGTCGTGGTTATACGTTCGCGCGTGATGAAAGTGCCCCATTTGCC
TGCTTGGTAGGGATGCAGGAGCATTTTGCTACTGAGATTATTGATGGAAT
GACGTCATTGTTCGTTGGCTCCTAGATCTCAGGTCTAGCTTTCGATTCGA
ACGACGATGCTTCAACGCCTTTAAATCCTTGTCGTGTCGAGTCAGGCGGC
GCCACAGGCTGCCGACGGCGGTCTACATGACATCAACAACAGCAGCGCAA
ACAGACTAGTCCTCGCAGTCCAGTTCGTCGCCTGGGTGTTTCAAAGAAAT
GGCTAATGCATTGGAATCGTTGGTCGGAGTGCAACAACGGTTTCGTTTAA
ATGAAGGTTAAAGTTCATCAAAATATCGTTGTCCCCCCCAAACCGTCGAG
CCTAGACTTGGAGACGACAGGGGTGGTATCAAAACCATACAAGCACCAAG
CTTTTCTGTTTTGGATCCAGATCTAGTTTGCAGCAACCCGCTCAGCGCGA
GTTTTTCGTCCTCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCACCCCCCCCCCCCCCCCCCCCCCCCGCCCCCACCGCGCCCAGCCACN
NNNNNNNNNAACTACCCTTGACGGCTCCCCGGGAAACCGCGAGCTGCTCA
TCCTACTTGTACCCGTGTCACAAAAACAACGCACAAGAAGGCCCACACAG
CCCTCTTCCGCTTCCATCCATCGACGTTCTTGTCCCAGCCGGCGCTCCGA
ACCCCGGCTGTCAGGGAATCGAACACCAGTCCTCCTGGGTGCTGTCTCAG
AGGTTATTGTTGTTGTGTACTTCCCCCGCGTCGGCGCGTTCTTTCTTGAA
AAAAAGGTGCGCGATCATGCCTCTTCTTTGCGACGGGGGCGCCGCCCCGG
CCTTCCCCTTCCGCAGCGCGGCATCACCGGCAGCGGCGCTCGCTCCCCGC
TAGGGGCGGCCGCGTCGCGGACCGGCGCGGCCCGGATGTTTCGCTCTCCT
CTTCCTGGTCTTCCTCTCCCGCCGCGCACGAGGAGCAAGGGCAAAGCGGT
AGAGGGCCGCTCCAAGGCGGCAGCTTTCGTGCTGGCGGTGCGGCCGATGC
TTCGAACGGCGGCGGCGGAGATGGGGACGGCGTATCTCGGCCACCAAGGC
CACCATCATCGTCGTCGTCGTCGCCGCCGTCGCCGCCATTAACGGTACGG
GAAGCGGCGGGCGCGGCGTCTCAACAAGGACAGGTGCGAACGCGCCGGCA
CAGGGGAAGGCAGGGCAGCGGCTGGGGGGGCGATGGGGACGGACCCTACG
GGGGTGACTCCCGCATGAGTGTCGAAGAGCGAGAGAGAGAAGCGCGAGCT
GTGCAGGTGAGGTTATTGGTATGGAAGGAGGGCGGTGATGAGCGACGTCA
GCGGTATGTAGCGTGCGGTTTTTGATAATGGGAAGTGATGCTCGAAAGGT
TCTACTGTGGGTAGTCATGCAGTGATGGTCGGGAGGGCTGACTGTGTGGC
GAGAAGGGTACGCAGATGCGGCAATGGCCATGTTGATTGGCCACTGTAGC
AGTTTGACGACTGATTAGACTCCTGTGACTAGTCAATCAGCGCTGACTTC
TCAGTAGTCTAGTGGATTGTCTCTAAACTGTTACAAGTTCGTCGTACGGG
TTGTAATGCCCGTCACTTTCACTCCGAGGTATCGACTGCCATCAGGACCC
CTCATAGTGTTAATGTTGTCACTTTCACCGCACTGTAGCGTTACTCGTCT
CCCCCACTCTATGCCGGGGTGTGTGCACGGGAGTACCTAGCCGTAAAACT
CCAAACATGGCAATCACGCGATACCTCTTTCACTCCGTCTTTTCTCCGGG
ACGAAGAAAGTCCTGCATCGGGAATGGAACCCGGGACAACCAATTAGACT
GCTGACTAGTATGTCAGCGCTGACTGCTCAGTAGTCTAACTTAACCGGTT
ACAAAAAGTTAGAGACAATCCATTAGAATACTGAGAAGTCAGCCGCCGAC
TTCTCCCAGTAGTCTCATCGGTCGTCACTTAACCGCTACACCACCCTCAA
GGCCGAGAGACGTCGTACGCCACCCACCAATACTTCTTCAGGCCGCCACC
CGAATCCTCCGCGAGCGCTTGCGCGTCAGAGTCAACCCAACTCTAAAGCC
TATCAGTGGTTCCTGGCAACCAAAGTCACGGAGCAGGTCGGAATCGTGCC
GTACGATGTGGCTGCTGCCAGCATCTCCTAAAAAAATCAAAGATAGCTTC
ATGCTCTTTCGCCATGGTCGAATCCGCGCTGCCACGCGCTGCTGTCCCTC
GTCCTTCTCCCCCTTACCTTACCGTTCCCCTCAGTCTTCCACTTCCATTT
CCCTGAGGACGCCGCACAAACATAGAGTCGTACATGTAGAGATGAATACC
TCATCCCTGTATCAAAGCCCGCCAAACTAAACGCCTGCGGCCGTCAGTGC
TTGCATTGGCACCCCACCTAAAATCGGATGGCGCGGGTGGTTCCAATCCT
CGCAACTGTCTGCAAAGCAGAGAAGATGGCGACCAGCACGTGCGTATGCC
CTTTGCCCCCCCCCCCTTCCCGCCGTCCCGCCTCTCCCTGTTGCCTCCTC
ACACAACCTGACGGTGCTTGCTTTCCCTCGGCCGTGGCTGTCAACGGACG
ATCCCGCCAATCCCAACAGGGCGCTGTCGCGCTTGCTGCGGCGAGGCGGG
GTACCGGGGAGCGGGAACGACTGGTGGCCAGCGAATCTCCCGTGGAGGAG
TTCGTCGTGAGGGGAAGGCGTGTTTTGGTCAAGAGGGACGATAAGGTGTG
CGTTTGCGTGCATGTGTGTGCGTGCACGTGTGCCCTGGCTGACGTCGTTT
TTTGGACTGAGTTGGTTTGAACCAGGCTTGATCTTTGCATCGGCTGCGTC
GTGGGCGCCGCGAGGCGCCGATTGGCGTCAGGTACCCCCCTTTGAGCACA
TAGCATTCGAATGGGGTCATGTCAGGAACAACCCCGCCTTGGAATCACAA
AGAACCCCGGCAATGACGGCGAGAGCAACAAGAGCGACGGCATGGCCCCC
GTTTGATGTGACGTCTGCAGATGCGACTAGCGGAGAGCGGCCTGTCGGGA
AACAAGGCGCGGAAGCTGTACGCGCTCAACAAAACCCCGTCATGCTCCTT
CCCCAAGATTGTGGCGAGCCACGGCGGACCGCAGGTAAAACAAGGCGACC
CCCAGATTTTGAAGGGAGGGATGGACGGGGGTGTGAGGGGTAGGCTAGAA
AATTAATCTTAGGCCTCGTTGACAGCTCTCTGTCAATGAATGGCAATGGA
TCAACGGCCTCTTCCAGTTTTGTACGAATACGAAGTCGGTACGTTCTTTC
CAAGGAAAATGAAAGGAGGCGTTGACATCAAGTGTGGCGGGGCTTGGTGG
ATGCACTAAGGGAGGGCCGTCGGAAGCCGAGGGTGACAAGCGTTCCTTCA
GCCACGAGCAGATGCGTACTTTTCCTTGGATAATTCGCGTGCCGACGACA
GCAAGAGCCCCACGAGTGATCAGAGGGCCATCGGCCGTGTATCAGGAAAC
ATCCGAGCCCGGTTGTGCAGAACGCCCGCGATTGGCAATGCTTACAGCGC
TGTCGGAGTTTGAAATGGGGGGTGACAACAGCAACTAGCCGCGTGTGGTG
TTGATGGCGCAGCCCGGCATACCGGTTTCGACGTCAGCCCGTTCACGGTA
CGGCGGCGCCACCGCACCGCTGCTTGTCGCGAGTCGTCGCTGGGGCCAAC
GCTCATGGAAAAAATTGTGACAAAGGCTCCGATTACACCGGAGGTAGAAA
AAAGTGACCCATGTTTACAAACACGCCTCCTTCGGCTCTTTTGCGTTCGC
CAGCACGCTCCTCGTAACCGCAACAAAATTCGGCGGCGGCACGCCTGCTG
TACCAGCTTAGCAAGAAACTGTCAGCAATCCCCCCAGCAGCTACGGATGT
CGGCAAAACCGAGTTGCCGCTTTTTTCTCTGACTTCCTTTGGTGGTGCAT
GTGCGCGGCCGTGCATATGTGGGGCACGTTCCACGATGGCCAAACGAATT
TTTGCCGGGTCGGACCACTCGTGTTGCTGCAACCGCGAAAGTGCTGCAAC
CTCTGACGTGGTCGCCGTCCAAAGTGGTGGGTTCGCCGGCCTTTGTGTGC
ACACTAAGCGTCCGCCCACTTTTCTCTTTCGTGGATCAGCGTTTCAGCTT
TTAGCCGTTCGTCAAGTCGCCGAAGAAAGGCGCGTACGTGCCAAACAAGA
GGGAGAAGTTGAGCCGTCTACCGAGTACCAACAGCAGCAGGGGACCTTCA
CCCGTGGTTCCTCGCACAGTTGTTGTCTCTCCGAAACTTGACGAGTTTCG
CCCATGAACGAGCAGCAGCCTACCTCCTGCACATCCCGTCGGTCCCTTGG
CGTGTGAGAAGCTCCCCGTATGACCTGCGCCTTCTTGAGAGCGACGGAAC
ATACCTTGCGCCATAAAGCGCCAGCGTTAGGGCCGCCTACCGCGTTTGCG
TACCGTCTCCTCGCCCCCCTCGCGAGCATCTATCCATCAACGCCTCCGCC
AGGCATATTGTCTTGCGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTTGGTGTGTTTATGTTCGTCTGCACCCCCGTCTGCCGTGCCGTCCAGAG
TAACGCGATGGTCGCCATCGCTGCGGTGGTTGCCAGCAAGCCCGGGTCTT
CGTTTGTCTACTACACGAAGCCGGTGCCCAGATGGCTGCGAAAAAATCCC
GTGGGCAACTTCGCCAAAGCGATCATGCTCGGAGCGGAGGTAGGTTAACA
ACGAAGGTCCACCCGGACCCACGGACGCTTTTCGTGGCCTTTGCGCTTTA
GGTGCTTTAGGTGTCTCTCTCTTATGTTCTGGATAGGTAACGCAGCGTTT
TTTCCGCCTTCCGGAATTTCTGTGGATTTAGTCTGAGCGACCCGTATAAG
GGGGTGACTGTTCGCGAACCTCCGGTCCGGACGGCCTTCTCTGGCCCTTC
ATTTTCTGTCGCAAGCCTGTACAGAGGAGAACGCAACCAGATGGACTCCA
CCAGACGTGTCGTCTCAAGCGGGTTCTCTTTGTCTTTCTTAAGCCTTGTT
GTTATCGTCAACGTTCGCCTCGTCGTTGTTCGCCCGCCCCCGCGGCACTC
TGTGCGGGTACGACAAGATCATGGAAGTCCACACGAACGACTACAAGAGA
ATATTCGGCGGCACCGACGGGCCGGGGGTGGACGCTTGCGCCGAGGTTGT
CCCCAAAGAAGCGCTGTTTCTGCCTCAGGGGGGTGCGGACGCCGCCGCGG
AAGAGGTGACCAGCGTGGGTTGGGTCGGGTTGGGGAGATCGGACTCTTGT
TGCTGAGATCGCTCGAGATCGGAGATGTCGTCCTCCTGTCGAACCGTGGT
GATTTGTGCCGGTTTGCCGCGATCGTTTTTAACGGGCGCGTTGTTGATCT
TGTTCGAAATAGGCGCAGGGCAGCCTGACGCACTGGATCTTGAGGAGTGT
GAATGCTAGATCTGGTGTTGGCGTTGGTTGTTTTGTAGCTTGTCCAACTG
CGCAGAGTATACGTGTTAGCTCCCACCGATTGTTTTTCCTCAACCCCCAC
ATGAAACCGTCCTCTCTTTACTCGATAGGGAGTCTCGATGCTCGCGGACG
AAATAATCGAGTACTGGGACGAGAACGGGCCACCCGGCAAGGTTTGACTA
GTTTATTTTCTCGTCAGAGAAGAATTGCGATTAGATATTGGCATGATCAC
CTACGTTGCTGCTGCATAAACGAACAGTTGAGGAGGGAGCCAATCCGGCG
CCAGGGTGAGGGTGCGATTTCGTTTGGGTAGTCGCCCCCCCCCACCGCCA
CCTCTGCCCCCCCGGTGGGGCATACATTTGTCGGATGCGAACTGTTTCCC
TCCTCCATCGTTCATCCTTCACGAGTACGAAAGGAAACCCCGCATGCGTC
GTGTTGTCATCAGCCGCCCTCGACAGAAGTGTCGCGTGTACAGTGTCGCC
GTACGTTTGTGGGTTTGTGCCTTGATTCGCTCAGTGTTATTCTTCTTTCC
CTGGGTGCGTGCAACTCTCTCCACTGTTTCGTTTGCCAGGAGCTGCGAGT
TGTCCTCCCGGCGGGGACGGGGACAACGGCGCTGTTTCTCGCTCGCTACC
TGGTGCCGGAAGGCATCCCCGTCTACACCGTCCCGTGCGCGGGGGACAGC
GGCTACTTGCAGAGACAAATGGCCAAGGTGGGGCTACCGCGACCGTGTGC
TTGCATAGCTTTCCGTGTCCTCCTGTCTGCGTTCTCACGGGCCGCAACTG
CCGTTTTGTTTGGGCGAAGGTCGCGCAGAAACAAGCAGCGTTCCGTGCCT
CTGTGCGGGCCCGACCGGTCCCCCTCGCCCTCAACGTCGGTCTCAAGTTT
GCCCTGCCTTGCGCGGAGCATTGCATCCCATGAACGAAGGCCCAAAATGC
TTTTACAGCCCAAAATGCTGATACACGGAGTGTTTATACGCATATATGTG
CACCAGGTAGAAGTACAGCAGTACTGTACGCGTCTTGTCGCCCGTCCTTC
GGAGCTTGACAACCGCTCAAGACTATGTGAACCACCCACATTTTATTTCC
ATGCCCGTACGCCCGTGTGAAAAACCCGCGCTTGGTCGTGCCTGGTCATG
ATATCCTCAGCCCGCTTCTACCGTCATCCCGTCTTTTCCTTTTGCCGGTC
TGTTTTATTCTGCGGCTTCTTTCTGGTCGTCTTAGGTGGACCGTGAATCG
GGAGGTGTCGGGATTTTCCCGCAGTTCGTGCAGCAAAATAGACGGAAGGC
GGCGTTCGGCGCTCCCAAGATGGAGTTCCTAGAGGTGTGACAAGGATGCT
GCTCTTATCGATGTTGAGTCGGTCCCTGTTTCTCTACATGCCTGTCTGTC
TTTGTGTATCTCTTTTCCCTCGCACTACGCACATCTCATCCAGCTACCCC
CGCTTCATGTGTTCTAAAGAAGAGGCAACGTCGCGGAAGTATTTGTGCCT
TTTCTGAGCCACGTCTCAGCAGGCGCCTCAGGAGGCTTGCTCAGAATTCC
ACCCCGTGAGAGTTCGGTGCGTAGGACGTGATAAAAACAACTCAAGTAGA
AGGCGGTGAGACTCGGCAGATTGAGACATGGAGTGCAGCTGTCGGACTCT
CGTGCACCCAGATCACTGTCGTTTTTGCCACCTCGCGCACCAATCGCCAG
GACCATCGTGGCGCCATGTGGCAGCAGAGCTGCTCGGTGGCATTCACGAC
AACGGTCAACACAAGCTACATCCGTCCAATCCTCTCTTCCTCACACGCTC
TCTCTTATTTTCCTGTATCTCGCTCTACGCCTCCTTCACTCTTGCTTAAC
GTCTGCTTGTCTGCTGCAGGTGTGGCGGGAGCTGGACAAGCTGGGGCTGT
TCGTGGACCTCCTGTACGCCGCCCCAACGTGGGAGGTGAAAATAGGCCAC
AAACCCACAAACATGTTGATGACTACCCCTTGATCGATGGGTCTCCGTCA
GGAATACCCTGTACGATACCCTGTACGAGGGAGAAGCGAAATACTGATGT
CGACGTCGACCTACGAAGAAGATGATTAGCCCATAAACTCAGAGGAGACG
TGCGACGAGCGAGGGTTTTGCTTGGAAAACATTTTGTTTCTTGTTTTTTG
TTCTTCAAGGAACATCCCCCTACCACCCAGGCCCCGAAAAAGTACGTTCG
ATCCGAAAAAAACGTCGGGTTCTCGCCCAGTTCTGATAGATCCCTGCTGC
GACAGATCCGAACTTGAGTTAAAGCCTTTTTCGTGGTGGCGATTCAAAGC
CCGTGTGCATAATCATGCCAACATGCACGTAGTCGTTCCCAGCGCGCGTT
TAGTGTGACGGCTGTTCGGCTCGCTTTGTTGTTCGTATCCCTCACTACCA
ATTCGTAACCACCGCCAACTTGAACGCTCCCACTTTGTCGACAAAACAAC
ACGCACCCCGGCCCGCGTTGGTTTCTGCTGATTGTGTGGGCCCTATTGGC
AGTCACAGTCCCTAGGGATGCGCCAATCAAATCGTCGACTCGCTCGAGAA
CCGTTTTACTATAATTCGATCGATTCAATTCCTTGGGTCAGACGGACCAT
CCTCACACCGCGCGCTCGCGGTCTGCGCCTTTTTTGTTTAACGTACAGGT
AATCATGGACTCGTGGGATGCGCCAGTGAAGTCGCCGGTGTCCGTCACGC
CAGGCCCTGCCTTAGATTCCGAGGTGCTTCGAAGCACTGCTGTGTTATGT
TGTTGTCGTTGTTGTCGTTGTTGTCGCTGTCGCTGACGACGTGGCAACAA
CATCCGATTGGTTTCCACGCACGCCCCTCGTCGCCTCCACGTGCATCCAC
CGTTAGATCCCTGCTTGTTTGCCCCGACCGTTACTTGAGAGTCACGTTCG
CGCCTGCTTTCCCTCTCCTGCTCCACGCCTCGCTCAACGCCAGCCGCAAC
TGATGTACGTGCACTGCGGAGGCCTGGAAGGAGTCTCCTCTCAGCTCACG
CGCTACAAGCACCTGGGGCTCGTGCAGGACGGGCAGCTGCAGTAGGAGCC
CTCGTCTTGCGCGTCTGACGTTCATCGCCTCATCGCGTCGGTAAGTGCTT
GATCTCCGGGACGCTCTGATGCACACACACTTTGCTTTGGCTTGGGGCTG
CGGTGCTGTTCCGTAACGAGCCCGTCGGGACGAATCCGGTTGTACAACAA
CTCCCTTGAGTACTGTGCCACTAGTGCCCCGACTCTACCACCACCACCGG
TACCACGTGGGCAGTTGAGAATTTTGAGGCACGGCGAGTGACGTCCGCCC
GCCTATCCGAACCAACGGCATCCTGTTCAATTCGTCGAACGTTGCTTACA
GCTCCTTGCATGCTCTCGGCGTGCTCTCTGCGGGGGTAGGAATCCACGCC
GCGTTTCGCACGCCATGGCATGCGCCTCCGTGGTCCTCCTCTTCACTCCC
CTGCGAGGCGGCGTCGGGGGCAACACAAGCAGGGCTCGGCGGGAAAAGCG
TCAGGGGCGGCACCCCGCCGCCGACACCTGCATGTGGTGCCCTTGCGGTA
CGAAGACTGCTCCTTCCGCGATCGCCGCGCTCCAGATCGTGAATCTGGGC
TCTCCCGAAACCGGGGGTCACACTGTGTCTAGCTTTCCTATCCTAAATTC
CACTGTGTTCCAGAGTACCCGGGGGGCGCTTTTTGGCCGGGATCTGGTTG
CGAAGAAGCCCTCGTCCACTTACAGGTCGTCTCTTCGTGTTTTTGATGTG
TGAGCATCAGCCGCGAATGGGTCAGCAGGCGCGAGAGTGCCATCCTCGCT
TGAGTGTTGCTCCCTGCTCTTGTTGTCGGGCGGCCTTTGCACGAGCTCAT
CCGAAATGTTTGACAATGCACGGAGTCTTCTCTCGTACCACGCGACATGA
TCCGGGTTGTGATGTATGGACTAGGTTTTGGCTGGGAACGTCTTTATTTG
TGGCCGGGATTGTTCATCTGTTAGATGAACGATTGCGACTATATTCATGG
ACAAGAGAAGGGTGTTTTCCGCTAACGGCTGTTCAACGAGGGATGTTTTA
TGGGTATTTTACTGTGGGGATTGGCGGTGTTGATACAGGTCGAGGGGAGC
ATCGTACAAGATGGATTGGTTCATAACATGTGTGTCATGTGTTGTGAGGT
CGGGACTTGAGTTGTGGACGCAGGTCAGGTGTTATGACGTCATCCCGGAG
AATTACTACTGCGCGCTGTACACTGGGATTTTTAGTGCGGAAGAAATTTG
TCTGTACTTACGATACGGGGCGTACTCCCTGTGTGAGGTTGGCCTCGTGT
AGGATGTTGATGTCGCCGTCTGGGTCTTCTTCTGCGGGGTAGTTGTGAGT
CCCAGCACATGTTTCAGGCAAGACGTGCGCGCGGGCTTGAATCCAGTTGG
ACTCGTACCCAAAGGTTCAGTAACAAACAACGCACAACTGTAGAAAGAGG
TAGAGCCCCTCGGTTTGGACAGCAGGTGAAGAGGAGAGATGAGCGTAGCG
GTGCACGAGCTCTGACCAATGCCTGTCCACCTCAAAGCAAAGGAGAGCCC
CCTGGTTCGAAAAAACCATATCCCAGATGCTCCAAGCAGAATTGGAAGTA
GGAACGTTCGGGAATGACATGCGCGGCTACACTCATCCTTGGGTGTTTCT
AGGGCTGTCCTCAGCACTTTCACCGCCGTCAAATTACCACTATGGCCACC
TCACTTGGTGGCCAGTTGCCATTCCAACACTTGCCGTTCATCACCGTACG
CGGTGTGCTATTATTAAAAAATTAAAAATTGCCGCGCATTCCCGTGGTGG
TTTTCTTTGTGTTGCCGTACAGGTATTACCCCGGCGACCAGTTACCATAC
AAAAATTACTTGTACAAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1356:9475..20042-

>mRNA_H-canaliculatus_F_contig1356.2876.1 ID=mRNA_H-canaliculatus_F_contig1356.2876.1|Name=mRNA_H-canaliculatus_F_contig1356.2876.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3306bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1356:9475..20042- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTTTGCCCTAGGCTGTCAAGACCGTCGCTCGTGAGCTTGGTTGCAGC
TGGTCTTCTAGCGCCTTCGAGAGGCATCGCAGTCTACGGAGATGCTTTGC
CCTAGGCTGTCAAGACCGTCGCTCGTGAGCTTGGTTGCAGCTGGTCTTCT
AGCGCCTTCGAGAGGCATCGCAGTCTACGGAGGTGCGCGATCATGCCTCT
TCTTTGCGACGGGGGCGCCGCCCCGGCCTTCCCCTTCCGCAGCGCGGCAT
CACCGGCAGCGGCGCTCGCTCCCCGCTAGGGGCGGCCGCGTCGCGGACCG
GCGCGGCCCGGATGTTTCGCTCTCCTCTTCCTGGTCTTCCTCTCCCGCCG
CGCACGAGGAGCAAGGGCAAAGCGGTAGAGGGCCGCTCCAAGGCGGCAGC
TTTCGTGCTGGCGGTGCGGCCGATGCTTCGAACGGCGGCGGCGGAGATGG
GGACGGCGTATCTCGGCCACCAAGGCCACCATCATCGTCGTCGTCGTCGC
CGCCGTCGCCGCCATTAACGGTACGGGAAGCGGCGGGCGCGGCGTCTCAA
CAAGGACAGGTGCGAACGCGCCGGCACAGGGGAAGGCAGGGCAGCGGCTG
GGGGGGCGATGGGGACGGACCCTACGGGGGTGACTCCCGCATGAGTGTCG
AAGAGCGAGAGAGAGAAGCGCGAGCTGTGCAGGTGCGCGATCATGCCTCT
TCTTTGCGACGGGGGCGCCGCCCCGGCCTTCCCCTTCCGCAGCGCGGCAT
CACCGGCAGCGGCGCTCGCTCCCCGCTAGGGGCGGCCGCGTCGCGGACCG
GCGCGGCCCGGATGTTTCGCTCTCCTCTTCCTGGTCTTCCTCTCCCGCCG
CGCACGAGGAGCAAGGGCAAAGCGGTAGAGGGCCGCTCCAAGGCGGCAGC
TTTCGTGCTGGCGGTGCGGCCGATGCTTCGAACGGCGGCGGCGGAGATGG
GGACGGCGTATCTCGGCCACCAAGGCCACCATCATCGTCGTCGTCGTCGC
CGCCGTCGCCGCCATTAACGGTACGGGAAGCGGCGGGCGCGGCGTCTCAA
CAAGGACAGGTGCGAACGCGCCGGCACAGGGGAAGGCAGGGCAGCGGCTG
GGGGGGCGATGGGGACGGACCCTACGGGGGTGACTCCCGCATGAGTGTCG
AAGAGCGAGAGAGAGAAGCGCGAGCTGTGCAGGGCGCTGTCGCGCTTGCT
GCGGCGAGGCGGGGTACCGGGGAGCGGGAACGACTGGTGGCCAGCGAATC
TCCCGTGGAGGAGTTCGTCGTGAGGGGAAGGCGTGTTTTGGTCAAGAGGG
ACGATAAGGGCGCTGTCGCGCTTGCTGCGGCGAGGCGGGGTACCGGGGAG
CGGGAACGACTGGTGGCCAGCGAATCTCCCGTGGAGGAGTTCGTCGTGAG
GGGAAGGCGTGTTTTGGTCAAGAGGGACGATAAGATGCGACTAGCGGAGA
GCGGCCTGTCGGGAAACAAGGCGCGGAAGCTGTACGCGCTCAACAAAACC
CCGTCATGCTCCTTCCCCAAGATTGTGGCGAGCCACGGCGGACCGCAGAT
GCGACTAGCGGAGAGCGGCCTGTCGGGAAACAAGGCGCGGAAGCTGTACG
CGCTCAACAAAACCCCGTCATGCTCCTTCCCCAAGATTGTGGCGAGCCAC
GGCGGACCGCAGAGTAACGCGATGGTCGCCATCGCTGCGGTGGTTGCCAG
CAAGCCCGGGTCTTCGTTTGTCTACTACACGAAGCCGGTGCCCAGATGGC
TGCGAAAAAATCCCGTGGGCAACTTCGCCAAAGCGATCATGCTCGGAGCG
GAGAGTAACGCGATGGTCGCCATCGCTGCGGTGGTTGCCAGCAAGCCCGG
GTCTTCGTTTGTCTACTACACGAAGCCGGTGCCCAGATGGCTGCGAAAAA
ATCCCGTGGGCAACTTCGCCAAAGCGATCATGCTCGGAGCGGAGATCATG
GAAGTCCACACGAACGACTACAAGAGAATATTCGGCGGCACCGACGGGCC
GGGGGTGGACGCTTGCGCCGAGGTTGTCCCCAAAGAAGCGCTGTTTCTGC
CTCAGGGGGGTGCGGACGCCGCCGCGGAAGAGATCATGGAAGTCCACACG
AACGACTACAAGAGAATATTCGGCGGCACCGACGGGCCGGGGGTGGACGC
TTGCGCCGAGGTTGTCCCCAAAGAAGCGCTGTTTCTGCCTCAGGGGGGTG
CGGACGCCGCCGCGGAAGAGGGAGTCTCGATGCTCGCGGACGAAATAATC
GAGTACTGGGACGAGAACGGGCCACCCGGCAAGGGAGTCTCGATGCTCGC
GGACGAAATAATCGAGTACTGGGACGAGAACGGGCCACCCGGCAAGGAGC
TGCGAGTTGTCCTCCCGGCGGGGACGGGGACAACGGCGCTGTTTCTCGCT
CGCTACCTGGTGCCGGAAGGCATCCCCGTCTACACCGTCCCGTGCGCGGG
GGACAGCGGCTACTTGCAGAGACAAATGGCCAAGGAGCTGCGAGTTGTCC
TCCCGGCGGGGACGGGGACAACGGCGCTGTTTCTCGCTCGCTACCTGGTG
CCGGAAGGCATCCCCGTCTACACCGTCCCGTGCGCGGGGGACAGCGGCTA
CTTGCAGAGACAAATGGCCAAGGTGGACCGTGAATCGGGAGGTGTCGGGA
TTTTCCCGCAGTTCGTGCAGCAAAATAGACGGAAGGCGGCGTTCGGCGCT
CCCAAGATGGAGTTCCTAGAGGTGGACCGTGAATCGGGAGGTGTCGGGAT
TTTCCCGCAGTTCGTGCAGCAAAATAGACGGAAGGCGGCGTTCGGCGCTC
CCAAGATGGAGTTCCTAGAGGTGTGGCGGGAGCTGGACAAGCTGGGGCTG
TTCGTGGACCTCCTGTACGCCGCCCCAACGTGGGAGGTGTGGCGGGAGCT
GGACAAGCTGGGGCTGTTCGTGGACCTCCTGTACGCCGCCCCAACGTGGG
AGGTAATCATGGACTCGTGGGATGCGCCAGTGAAGTCGCCGGTGTCCGTC
ACGCCAGGCCCTGCCTTAGATTCCGAGGTAATCATGGACTCGTGGGATGC
GCCAGTGAAGTCGCCGGTGTCCGTCACGCCAGGCCCTGCCTTAGATTCCG
AGCCGCAACTGATGTACGTGCACTGCGGAGGCCTGGAAGGAGTCTCCTCT
CAGCTCACGCGCTACAAGCACCTGGGGCTCGTGCAGGACGGGCAGCTGCA
GTAGCCGCAACTGATGTACGTGCACTGCGGAGGCCTGGAAGGAGTCTCCT
CTCAGCTCACGCGCTACAAGCACCTGGGGCTCGTGCAGGACGGGCAGCTG
CAGTAG
back to top