mRNA_H-canaliculatus_F_contig1356.2875.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1356.2875.1 vs. uniprot
Match: D7G222_ECTSI (Glycosyltransferase, family GT34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G222_ECTSI) HSP 1 Score: 511 bits (1316), Expect = 8.880e-175 Identity = 267/357 (74.79%), Postives = 286/357 (80.11%), Query Frame = 1
Query: 616 SNGSGSTGNGRSGNFLAKVTLKVLLVGGVLTLMLFAAWLTCLAVSEFYIRTYCLQVRAMEAAQRPRGECPIVKLTRESRGGWGALSRTEA-RVGTGTGGXXXXXLGALVAAGGVLDKDGAAASDTAAAVVGEEGGRDERLRFGMILMCDEGMWPQEYSERSIANKKAYAALHGYDVVVATSADIDRSRPAAWSKLLVLNKHLGSYDYVIFVDIDAFIMNPTFKLEWLLDVAKKQQQTGGMDGWG-GKESDLIVTQDWNGPNSGVVLIKNSDFSRWLLQEWWDQAQFVKGNYPFKYEQRAMHYLLQTDCWKDAGLPYYADYAVVRAHTAVIDQCAMNSYLVHPWQVLLGRTNLGSAAR 1680
S S TG+G SG A +VL L L AWL CLAV EFYIRTYCLQVRAMEA Q PRGECPIVKLTRESRGGWGA VG G G G+ DK G+ + A A G EGG LRFG+ILMCDEGMWPQ+YSE+SIANKKAYAALHGYDV+VATSADIDRSRPAAWSKLLVL+KHLGSYDYVIFVDIDAF+MNP FKLEWLLDVA+KQQQTGG+DGWG GKESDLIVTQDWNGPNSGV+LIKNSDFSRWLLQEWWDQ QFV G YPF YEQRAMHYLLQTDCWK+ GLP+YADYAVVRAHTAV+DQCAMNSYLVHPWQVLLGRT++GSAAR
Sbjct: 43 SRSSSDTGSGGSGG--ASRGRRVLAWSRRLGLAFCLAWLLCLAVREFYIRTYCLQVRAMEATQPPRGECPIVKLTRESRGGWGAPPVVAGGEVGGGAGDMEE----------GLHDK-GSGGAAVAPAGGGREGGG---LRFGIILMCDEGMWPQQYSEKSIANKKAYAALHGYDVIVATSADIDRSRPAAWSKLLVLSKHLGSYDYVIFVDIDAFVMNPAFKLEWLLDVARKQQQTGGIDGWGAGKESDLIVTQDWNGPNSGVILIKNSDFSRWLLQEWWDQKQFVNGPYPFHYEQRAMHYLLQTDCWKEEGLPFYADYAVVRAHTAVLDQCAMNSYLVHPWQVLLGRTSVGSAAR 383
BLAST of mRNA_H-canaliculatus_F_contig1356.2875.1 vs. uniprot
Match: A0A6H5L917_9PHAE (GT34 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L917_9PHAE) HSP 1 Score: 499 bits (1286), Expect = 9.100e-168 Identity = 250/319 (78.37%), Postives = 269/319 (84.33%), Query Frame = 1
Query: 724 AWLTCLAVSEFYIRTYCLQVRAMEAAQRPRGECPIVKLTRESRGGWGALSRTEARVGTGTGGXXXXXLGALVAAGGVLDKDGAAASDTAAAVVGEEGGRDERLRFGMILMCDEGMWPQEYSERSIANKKAYAALHGYDVVVATSADIDRSRPAAWSKLLVLNKHLGSYDYVIFVDIDAFIMNPTFKLEWLLDVAKKQQQTGGMDGWG-GKESDLIVTQDWNGPNSGVVLIKNSDFSRWLLQEWWDQAQFVKGNYPFKYEQRAMHYLLQTDCWKDAGLPYYADYAVVRAHTAVIDQCAMNSYLVHPWQVLLGRTNLGSAA 1677
AWL+C+AV EFYIRTYCLQVRAMEA Q PRGECPIVKLTRESRGGWGA R G GG GA+ LD G A+ A GE GG LRFG+ILMCDEGMWP+EYSE+SIANKKAYAALHGYDV+VATSADIDRSRPAAWSKLLVL+KHLGSYDYVIFVDIDAF+MNP FKLEWLLDVA+KQQQTG +DGWG G SDLIVTQDWNGPNSGV+L+KNSDFSRWLLQEWWDQ QFV G YPF YEQRAMHYLLQTDCWK+ GLP+YADYAVVRAHTAV+DQCAMNSYLVHPWQVLLGRT++GSAA
Sbjct: 250 AWLSCVAVREFYIRTYCLQVRAMEATQPPRGECPIVKLTRESRGGWGAPPVVAGR---GVGGG----AGAMEEG---LDDKGRGAAVAPAGGGGERGG----LRFGIILMCDEGMWPKEYSEKSIANKKAYAALHGYDVIVATSADIDRSRPAAWSKLLVLSKHLGSYDYVIFVDIDAFVMNPAFKLEWLLDVARKQQQTGEIDGWGAGNGSDLIVTQDWNGPNSGVILVKNSDFSRWLLQEWWDQKQFVDGPYPFHYEQRAMHYLLQTDCWKEEGLPFYADYAVVRAHTAVLDQCAMNSYLVHPWQVLLGRTSVGSAA 554
BLAST of mRNA_H-canaliculatus_F_contig1356.2875.1 vs. uniprot
Match: A0A7S2WUX7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUX7_9STRA) HSP 1 Score: 189 bits (480), Expect = 2.010e-51 Identity = 95/230 (41.30%), Postives = 133/230 (57.83%), Query Frame = 1
Query: 1012 GGRDERLRFGMILMCDEGMWPQEYSERSIANKKAYAALHGYDVVVATSADIDRSRPAAWSKLLVLNKHLGSYDYVIFVDIDAFIMNPTFKLEWLLDVAKKQQQTGGMDGWGGKESDLIVTQDWNGPNSGVVLIKNSDFSRWLLQEWW-----DQAQFVKGN-------YPFKYEQRAMHYLLQTDCWKDAGLPYYADYAVVRA----------HTAVIDQCAMNSYLVHP 1635
G RD LRFG++L+ D+GMW + S+ S+ NK+ YA HGYD+VVA DIDRSRPAAWSK + KHL YDY+++ D D +MN KLE L+ G +D+I+T+DWNG N+GV +++NS ++ W L+E W +Q + YPF+YEQRA+HYLLQT+ W + LP Y H ++ QCA+NSY+++P
Sbjct: 68 GRRDTPLRFGILLLFDDGMWSSQLSQDSLENKRQYAQRHGYDLVVARGKDIDRSRPAAWSKFKAMRKHLPRYDYLLYTDADTIVMNQEVKLESLV---------------GDGSADVIITEDWNGVNTGVFMLRNSTWTYWFLREAWGLQGSEQEHMALHDRSAGGMKYPFEYEQRAVHYLLQTEIWTERHLPRYRPAITFEGALQTSETMWRHVQLLPQCALNSYMLYP 282
BLAST of mRNA_H-canaliculatus_F_contig1356.2875.1 vs. uniprot
Match: A0A482SUI0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUI0_9ARCH) HSP 1 Score: 180 bits (457), Expect = 2.280e-48 Identity = 87/215 (40.47%), Postives = 135/215 (62.79%), Query Frame = 1
Query: 1021 DERLRFGMILMCDE--GMWPQEYSERSIANKKAYAALHGYDVVVATSADIDRSRPAAWSKLLVLNKHLGSYDYVIFVDIDAFIMNPTFKLEWLLDVAKKQQQTGGMDGWGGKESDLIVTQDWNGPNSGVVLIKNSDFSRWLLQEWWDQAQFVKG------NYPFKYEQRAMHYLLQTDCWKDAGLPYYA-DYAVVRAHTAVIDQCAMNSYLVHPW 1638
++ L+ G++++ ++ G W QE R + N+ Y+ +H Y +VVA +DRS+P AW+KLL +K+L YDY++++D+D IMN T K E +D+A + D+I+T+DWNGPN+GV L+K S +S W LQ ++Q Q V +YPF+YEQRA+HYLL T W+ GLP ++ D +R+H + QCAMNSY+++P+
Sbjct: 89 NKALKIGLLMLYNDQDGTWDQELMSRVLKNRDEYSRMHDYSIVVANDI-LDRSKPPAWTKLLAADKYLDKYDYLMYIDMDIVIMNMTVKAEHFIDMAP--------------DKDMIMTEDWNGPNTGVWLVKKSAWSHWFLQTAFNQTQLVPKKSPEGISYPFEYEQRAVHYLLDTSIWRQRGLPKWSGDIQEIRSHFFFLPQCAMNSYIMYPF 288
BLAST of mRNA_H-canaliculatus_F_contig1356.2875.1 vs. uniprot
Match: A0A7S1XNR5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNR5_9STRA) HSP 1 Score: 178 bits (452), Expect = 2.780e-47 Identity = 94/218 (43.12%), Postives = 134/218 (61.47%), Query Frame = 1
Query: 1030 LRFGMILMCDEGMW--PQEYSERSIANKKAYAALHGYDVVVATSADIDRSRPAAWSKLLVLNKHLGSYDYVIFVDIDAFIMNPTFKLEWLL--DVAKKQQQTGGMDGWGGKESDLIVTQDWNGPNSGVVLIKNSDFSRWLLQEWWDQAQFV----------KGNYPFKYEQRAMHYLLQTDCWKDAGLPYY-ADYAVVRAHTAVIDQCAMNSYLVHPW 1638
LR G++L D+ W P + R+ N+K+YA L+GYDV++ T A ++ RPAAWSKLL L +HL YD++ +D DA +MNP+ +LE L+ D A + G++ LI+T DW+GPNSG++L++N ++ W L E + Q FV K +PF+YEQRA+HYLL T W+ G P Y D AVVR+ + QCAMNSY +HP+
Sbjct: 79 LRIGILLQVDDAWWAVPGGIARRAYDNRKSYADLYGYDVILETKA-VESGRPAAWSKLLGLRRHLQHYDWIAIIDADALVMNPSIRLERLIPADAAAR-----GVN--------LILTDDWSGPNSGIMLLRNDAWTYWFLDELYAQELFVNRRPPPGLSAKPQWPFEYEQRALHYLLDTAMWRARGNPAYEGDVAVVRSRVYTLPQCAMNSYFLHPF 282
BLAST of mRNA_H-canaliculatus_F_contig1356.2875.1 vs. uniprot
Match: A0A7S1TXZ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXZ2_9STRA) HSP 1 Score: 152 bits (385), Expect = 5.730e-39 Identity = 78/195 (40.00%), Postives = 116/195 (59.49%), Query Frame = 1
Query: 1090 RSIANKKAYAALHGYDVVVATSADIDRSRPAAWSKLLVLNKHLGSYDYVIFVDIDAFIMNPTFKLEWLLDVAKKQQQTGGMDGWGGKESDLIVTQDWNGPNSGVVLIKNSDFSRWLLQEWWDQAQFVKG-----------NYPFKYEQRAMHYLLQTDCWKDAG-LPYYADYAVVRAHTAVIDQCAMNSYLVHPW 1638
RS+ N++ YAA GYDV++ T A ++R RPAAWSKLL L +HL +D++ +D+DA IMNP +LE L+ G + ++++T DW+GPNSGV+L++N ++ W L E + Q F+ ++PF YEQRA+H+L+ T W+ G + Y D A V + QCAMNSY +HP+
Sbjct: 10 RSLENRRRYAARWGYDVILETRA-VERRRPAAWSKLLGLRRHLQDFDWIAIIDVDALIMNPAVRLERLIP-----------QGAAARGVNVVLTSDWSGPNSGVMLLRNDPWTFWFLDELYAQELFLADRVPAPGLSRRLHWPFLYEQRALHFLMDTPLWRHQGNVRYEGDAADVHRRVLELPQCAMNSYFLHPF 192
BLAST of mRNA_H-canaliculatus_F_contig1356.2875.1 vs. uniprot
Match: C1MP96_MICPC (Uncharacterized protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MP96_MICPC) HSP 1 Score: 157 bits (397), Expect = 1.390e-38 Identity = 87/208 (41.83%), Postives = 112/208 (53.85%), Query Frame = 1
Query: 1033 RFGMILMCDEGMWPQEYSERSIANKKAYAALHGYDVVVATSADIDRSRPAAWSKLLVLNKHLGSYDYVIFVDIDAFIMNPTFKLEWLLDVAKKQQQTGGMDGWGGKESDLIVTQDWNGPNSGVVLIKNSDFSRWLLQEWWDQAQFVKGNYPFKYEQRAMHYLLQTDCWKDA----GLPYYADYAVVRAHTAVIDQCAMNSYLVHPWQV 1644
++ ++ +CD S ANK+ YAA HGYD++V T D SRPAAWSK+L + KHL Y++V+F+D+D IMNP KLE + D D ++ D NG NSGV L+KNS + W L E W Q V G Y F YEQRA H+L QT W G Y A VRAH+ +++QC NS L PW V
Sbjct: 210 KYAILTLCDSNTG--YICVASAANKRRYAAKHGYDLIVVTEV-ADASRPAAWSKILEVRKHLPKYEWVLFIDVDTLIMNPNVKLEDIAD----------------DSVDQVIAADHNGINSGVWLVKNSRWMMWFLDELWAQTDLVTGPYLFHYEQRAFHHLFQTVPWTKQKSVKGKLPYPKAAEVRAHSKIVNQCVFNSLL--PWYV 396
BLAST of mRNA_H-canaliculatus_F_contig1356.2875.1 vs. uniprot
Match: A0A096PBI5_OSTTA (Galactosyl transferase n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096PBI5_OSTTA) HSP 1 Score: 147 bits (372), Expect = 1.030e-36 Identity = 82/209 (39.23%), Postives = 115/209 (55.02%), Query Frame = 1
Query: 1027 RLRFGMILMCDEGMWPQEYSERSIANKKAYAALHGYDVVVATSADIDRSRPAAWSKLLVLNKHLGSYDYVIFVDIDAFIMNPTFKLEWLLDVAKKQQQTGGMDGWGGKESDLIVTQDWNGPNSGVVLIKNSDFSRWLLQEWWDQAQFVKG----NYPFKYEQRAMHYLLQTDCWKDAGL-PYYADYAVVRAHTAVIDQCAMNSYLVHPW 1638
RL+ G++ +CD G+ S+ANK+AYA HGYD +V IDRSRP +WSKLL + KHL YD++++VD+DA +MNP LE ++D + D ++ D NG N GV L++N+ ++ W L E W Q V N FKYEQRA H+L + W++ P Y + VRA T ++ CA NS PW
Sbjct: 42 RLKGGIVSLCDGGV--DAICAPSMANKQAYADAHGYDFIVDADV-IDRSRPTSWSKLLAMRKHLPRYDFLLYVDVDAVVMNPETGLEDIVDF----------------DYDQVLAADSNGVNCGVWLVRNTPWTLWFLDELWAQEHLVAPKNTWNMLFKYEQRAFHHLYASTRWREVTKGPIYPNANTVRARTKIVHACAFNS---QPW 228
BLAST of mRNA_H-canaliculatus_F_contig1356.2875.1 vs. uniprot
Match: A0A482SJD6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJD6_9ARCH) HSP 1 Score: 146 bits (368), Expect = 1.030e-35 Identity = 82/227 (36.12%), Postives = 122/227 (53.74%), Query Frame = 1
Query: 1003 GEEGGRDERLRFGMILMCD-------EGMWPQEYSERSIANKKAYAALHGYDVVVATSADIDRSRPAAWSKLLVLNKHLGS--YDYVIFVDIDAFIMNPTFKLEWLLDVAKKQQQTGGMDGWGGKESDLIVTQDWNGPNSGVVLIKNSDFSRWLLQEWWDQAQFVKG------NYPFKYEQRAMHYLLQTDCWKDAGLPYY-ADYAVVRAHTAVIDQCAMNSYLVHP 1635
G+ GR +LR G++++ E W + + N+K Y H Y ++ A +D +RP +WSKL+ ++ +L + +DY+ ++D+D IMN + LE ++ D + E D+I+T DWNG N GV L +N+ +SRW LQ W+Q Q + +PF YEQRA+HYLL T W+ GLP Y D A +R H QCA NSY +HP
Sbjct: 73 GQRKGR--KLRIGLVMVYGMKQNQPGENTWSDDLMLPILQNRKEYCNYHNYTMINAKDL-VDITRPISWSKLIAMDHYLATNKFDYLFYIDMDIVIMNFSIPLEHFIEA----------DNY---EHDIILTHDWNGINFGVWLARNTAWSRWFLQSAWNQTQLIPPYATNGIKHPFDYEQRAVHYLLDTQTWQRTGLPSYPGDSADIRKHFQTYPQCAFNSYTLHP 283
BLAST of mRNA_H-canaliculatus_F_contig1356.2875.1 vs. uniprot
Match: A0A2R5GV14_9STRA (Xyloglucan 6-xylosyltransferase 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GV14_9STRA) HSP 1 Score: 143 bits (361), Expect = 4.150e-34 Identity = 83/201 (41.29%), Postives = 112/201 (55.72%), Query Frame = 1
Query: 1030 LRFGMILMCDEGMWPQEYSERSIANKKAYAALHGYDVVVATSADIDRSRPAAWSKLLVLNKHLGSYDYVIFVDIDAFIMNPTFKLEWLLDVAKKQQQTGGMDGWGGKESDLIVTQDWNGPNSGVVLIKNSDFSRWLLQEWWDQAQFVKGNYPFKYEQRAMHYLLQTD-CWKDA---GLPYYADYAVVRAHTAVIDQCAMNS 1620
LR G++ G + SI NK+ YA H Y+V+VA +ID+SRPAAWSK +L K+L YDY+++VD DA MN T ++E ++D E DL +D NSGV L++N+D++ W L+E W Q + G++PFKYEQRA+HYL TD KDA Y VR TAV+ CA NS
Sbjct: 156 LRVGLVTFF--GNLDPDVRAASIKNKQDYANRHSYEVIVADD-EIDKSRPAAWSKFPILEKYLPEYDYLMWVDADAIFMNMTIRVEDIVDA----------------EHDLFFARDEGDINSGVFLVRNTDWAMWWLKEAWSQTWLITGSHPFKYEQRAIHYLYGTDGLQKDARRHNHELYPRVDEVRGKTAVVPYCAFNS 337 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1356.2875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1356.2875.1 >prot_H-canaliculatus_F_contig1356.2875.1 ID=prot_H-canaliculatus_F_contig1356.2875.1|Name=mRNA_H-canaliculatus_F_contig1356.2875.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=561bp AAAAAAAAAAAAAQQGDMDSNTAPPRHRKQRQNIRQDASRLRSEDHRRQQback to top mRNA from alignment at H-canaliculatus_F_contig1356:102..8427- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1356.2875.1 ID=mRNA_H-canaliculatus_F_contig1356.2875.1|Name=mRNA_H-canaliculatus_F_contig1356.2875.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=8326bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1356:102..8427- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1356:102..8427- >mRNA_H-canaliculatus_F_contig1356.2875.1 ID=mRNA_H-canaliculatus_F_contig1356.2875.1|Name=mRNA_H-canaliculatus_F_contig1356.2875.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3366bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1356:102..8427- (Hapterophycus canaliculatus Oshoro5f female)back to top |