mRNA_H-canaliculatus_F_contig1356.2877.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1356.2877.1
Unique NamemRNA_H-canaliculatus_F_contig1356.2877.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1356.2877.1 vs. uniprot
Match: D7G220_ECTSI (FYR N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G220_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.990e-13
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 RETAKLLHARAGARARVEANSAAIFDITGEVLPPARPPRVKPD 129
            RETAKLLHARAGARARV+ANSA IFDITGEVLPPAR P+VKP+
Sbjct:  753 RETAKLLHARAGARARVDANSATIFDITGEVLPPARAPKVKPE 795
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1356.2877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G220_ECTSI1.990e-1388.37FYR N-terminal domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1356contigH-canaliculatus_F_contig1356:26386..27299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929099.2298687-CDS-H-canaliculatus_F_contig1356:26385..264701622929099.2298687-CDS-H-canaliculatus_F_contig1356:26385..26470Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 26386..26470 +
1696845678.27956-CDS-H-canaliculatus_F_contig1356:26385..264701696845678.27956-CDS-H-canaliculatus_F_contig1356:26385..26470Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 26386..26470 +
1622929099.2567832-CDS-H-canaliculatus_F_contig1356:27093..272991622929099.2567832-CDS-H-canaliculatus_F_contig1356:27093..27299Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 27094..27299 +
1696845678.2877169-CDS-H-canaliculatus_F_contig1356:27093..272991696845678.2877169-CDS-H-canaliculatus_F_contig1356:27093..27299Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1356 27094..27299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1356.2877.1prot_H-canaliculatus_F_contig1356.2877.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1356 26386..27299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1356.2877.1

>prot_H-canaliculatus_F_contig1356.2877.1 ID=prot_H-canaliculatus_F_contig1356.2877.1|Name=mRNA_H-canaliculatus_F_contig1356.2877.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=97bp
RETAKLLHARAGARARVEANSAAIFDITGEVLPPARPPRVKPDRSSLSSL
QHQRQQQQQMQRGMLGGGATNSGPIIGQQQQQQQQVNGRSSGGVGGG
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mRNA from alignment at H-canaliculatus_F_contig1356:26386..27299+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1356.2877.1 ID=mRNA_H-canaliculatus_F_contig1356.2877.1|Name=mRNA_H-canaliculatus_F_contig1356.2877.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=914bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1356:26386..27299+ (Hapterophycus canaliculatus Oshoro5f female)
CGAGAAACGGCCAAGCTGCTGCACGCGAGGGCGGGCGCTCGGGCGCGGGT
GGAGGCGAACAGCGCCGCCATCTTTGACATCACGGGTGAGACAGAAACCC
AGACATCTGACGGTGGCGTACCTCGCGTGTTCTGTTGTTGCTTGTGTGTT
TCTGCGTGTATCTCTTTTCTCTGGCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCC
CCCCCCCCCCCCCCCTCTCTCCCCCCCCCCTCTCTCAATGTCGCTCACTC
CTTCTCCTCCTTTCCTCTCTCCGCACCGAATGTCTAGCCGTCCGGTCAGC
TTGATGGGTACGTCTGCACTTTCGTAGCCCGACTCTCCCACGGGCCACTT
GCGTGGCAGCAAGCCACCTACCTGTCTGTGTATCCAGGACCCATCCATGC
ACGAACGTCCACCCCGCCTCTGTTTCACTTCTGTGCTCGTCCGCTCTTGG
CGTAGCTCGTCTCCTAAGCGGAAGTACGCAGATCGAGTGCACGAACGCCC
ACTACCGGAGGCCATCACGATAGCAAAACTAATTCCTCGCAGCTGTCCCA
CTACGTTTCTCTGTGTCTCTTTCAAGCCCTCTCTTGCCATTGACTGCTTG
TTATGTTCGTGTTGTGTGTTCGGTCCCGAAATGTTTACATCCGCCGTCCC
CCTTCCAGGGGAGGTCCTTCCCCCGGCGAGACCACCACGGGTCAAGCCCG
ACCGGTCTTCCCTATCCTCTCTCCAGCATCAGCGTCAGCAGCAGCAGCAA
ATGCAACGGGGGATGCTCGGAGGAGGTGCAACCAACTCCGGCCCGATCAT
TGGCCAGCAGCAGCAGCAGCAGCAGCAAGTGAACGGGCGTTCCAGCGGAG
GCGTTGGAGGCGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1356:26386..27299+

>mRNA_H-canaliculatus_F_contig1356.2877.1 ID=mRNA_H-canaliculatus_F_contig1356.2877.1|Name=mRNA_H-canaliculatus_F_contig1356.2877.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=582bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1356:26386..27299+ (Hapterophycus canaliculatus Oshoro5f female)
CGAGAAACGGCCAAGCTGCTGCACGCGAGGGCGGGCGCTCGGGCGCGGGT
GGAGGCGAACAGCGCCGCCATCTTTGACATCACGGCGAGAAACGGCCAAG
CTGCTGCACGCGAGGGCGGGCGCTCGGGCGCGGGTGGAGGCGAACAGCGC
CGCCATCTTTGACATCACGGGGGAGGTCCTTCCCCCGGCGAGACCACCAC
GGGTCAAGCCCGACCGGTCTTCCCTATCCTCTCTCCAGCATCAGCGTCAG
CAGCAGCAGCAAATGCAACGGGGGATGCTCGGAGGAGGTGCAACCAACTC
CGGCCCGATCATTGGCCAGCAGCAGCAGCAGCAGCAGCAAGTGAACGGGC
GTTCCAGCGGAGGCGTTGGAGGCGGGGGGAGGTCCTTCCCCCGGCGAGAC
CACCACGGGTCAAGCCCGACCGGTCTTCCCTATCCTCTCTCCAGCATCAG
CGTCAGCAGCAGCAGCAAATGCAACGGGGGATGCTCGGAGGAGGTGCAAC
CAACTCCGGCCCGATCATTGGCCAGCAGCAGCAGCAGCAGCAGCAAGTGA
ACGGGCGTTCCAGCGGAGGCGTTGGAGGCGGG
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