mRNA_H-canaliculatus_F_contig13557.2874.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13557.2874.1
Unique NamemRNA_H-canaliculatus_F_contig13557.2874.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13557.2874.1 vs. uniprot
Match: D7FZB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB5_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.310e-30
Identity = 52/67 (77.61%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:    1 RMYLMDKFEVQPDPWDNRIIRFNNCLQVLSCICDVASICIRDIRHLARVIHHLADLVYVSTVGCMTV 201
            RMYLMDKF VQPDPWDNRIIRFNN LQVLSCIC +A+IC+R++R LAR+I  +ADLVY++TVGCMTV
Sbjct:  112 RMYLMDKFGVQPDPWDNRIIRFNNALQVLSCICHIAAICVREVRELARIIDLIADLVYMTTVGCMTV 178
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BLAST of mRNA_H-canaliculatus_F_contig13557.2874.1 vs. uniprot
Match: D7FZB6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB6_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.730e-28
Identity = 50/66 (75.76%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 RMYLMDKFEVQPDPWDNRIIRFNNCLQVLSCICDVASICIRDIRHLARVIHHLADLVYVSTVGCMT 198
            RMYLMDKF V PDPWDNRIIRFNN LQ+LSCIC++A+ICI +IR LAR+I  +ADLVY++TVGCMT
Sbjct:  112 RMYLMDKFSVMPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADLVYMTTVGCMT 177
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BLAST of mRNA_H-canaliculatus_F_contig13557.2874.1 vs. uniprot
Match: D7FZB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZB7_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 4.720e-27
Identity = 50/66 (75.76%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 RMYLMDKFEVQPDPWDNRIIRFNNCLQVLSCICDVASICIRDIRHLARVIHHLADLVYVSTVGCMT 198
            RMYLMDKFEVQPDPWDNRIIRFNNCLQ+LSCIC  A+I ++D R LAR+   LA+LVY+S VGCMT
Sbjct:  112 RMYLMDKFEVQPDPWDNRIIRFNNCLQLLSCICHCAAIFVQDFRELARLTDVLANLVYLSAVGCMT 177
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BLAST of mRNA_H-canaliculatus_F_contig13557.2874.1 vs. uniprot
Match: A0A835YWZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 3.570e-22
Identity = 38/66 (57.58%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 RMYLMDKFEVQPDPWDNRIIRFNNCLQVLSCICDVASICIRDIRHLARVIHHLADLVYVSTVGCMT 198
            RM++MDK+ + PDPWDNRIIRFNN LQ+LSCIC+  +IC+ ++R  AR++  +A++V+ +TVGCMT
Sbjct:  113 RMFIMDKYRLLPDPWDNRIIRFNNALQLLSCICNCLAICVEELREFARILDLIAEIVFYTTVGCMT 178
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BLAST of mRNA_H-canaliculatus_F_contig13557.2874.1 vs. uniprot
Match: A0A7S3H833_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H833_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.970e-22
Identity = 41/65 (63.08%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    1 RMYLMDKFEVQPDPWDNRIIRFNNCLQVLSCICDVASICIRDIRHLARVIHHLADLVYVSTVGCM 195
            RM +MD++E++PDP DNRIIR  NCL +LSCICD+ASIC+R++RHL+  IH LA+ V  ST+GCM
Sbjct:  106 RMMVMDQYEIRPDPCDNRIIRLTNCLMMLSCICDLASICVRELRHLSSTIHTLANCVAYSTMGCM 170
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BLAST of mRNA_H-canaliculatus_F_contig13557.2874.1 vs. uniprot
Match: W2NFK8_PHYPR (Uncharacterized protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NFK8_PHYPR)

HSP 1 Score: 84.3 bits (207), Expect = 1.260e-19
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    4 MYLMDKFEVQPDPWDNRIIRFNNCLQVLSCICDVASICIRDIRHLARVIHHLADLVYVSTVGCMTVRADVE 216
            M +MD++ +QPD WDNRIIR NNC+Q+ SCIC + SICI ++  LA +++ +A   Y +T GCMT + +VE
Sbjct:    1 MMVMDRYRLQPDKWDNRIIRCNNCIQLASCICSLLSICISELGDLAGIMNCIAQCTYATTQGCMTAQVNVE 71
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BLAST of mRNA_H-canaliculatus_F_contig13557.2874.1 vs. uniprot
Match: A0A3R7JXJ4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JXJ4_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.650e-19
Identity = 36/72 (50.00%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 RMYLMDKFEVQPDPWDNRIIRFNNCLQVLSCICDVASICIRDIRHLARVIHHLADLVYVSTVGCMTVRADVE 216
            RM +MD++++QPD WDNRIIR NNC+Q+ SC+C + SICI ++ +LA ++  +A   Y +T GCMT + +VE
Sbjct:  108 RMMVMDRYQLQPDKWDNRIIRCNNCIQLASCVCSLLSICISELGNLADIMQCIAQCTYATTQGCMTAQVNVE 179
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BLAST of mRNA_H-canaliculatus_F_contig13557.2874.1 vs. uniprot
Match: H3GGH3_PHYRM (Uncharacterized protein n=28 Tax=Phytophthora TaxID=4783 RepID=H3GGH3_PHYRM)

HSP 1 Score: 86.7 bits (213), Expect = 2.330e-19
Identity = 36/72 (50.00%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 RMYLMDKFEVQPDPWDNRIIRFNNCLQVLSCICDVASICIRDIRHLARVIHHLADLVYVSTVGCMTVRADVE 216
            RM +MD++ +QPD WDNRIIR NNC+Q++SC+C + SICI ++  LA +++ +A   Y +T GCMT + +VE
Sbjct:  108 RMMVMDRYRLQPDKWDNRIIRCNNCIQLVSCVCSLLSICISELGDLADIMNCIAQCTYATTQGCMTAQVNVE 179
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13557.2874.1 vs. uniprot
Match: A0A484EEY5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EEY5_BRELC)

HSP 1 Score: 86.3 bits (212), Expect = 3.290e-19
Identity = 36/72 (50.00%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 RMYLMDKFEVQPDPWDNRIIRFNNCLQVLSCICDVASICIRDIRHLARVIHHLADLVYVSTVGCMTVRADVE 216
            RM +MD++ +QPD WDNRIIR NNC+Q++SC+C + SICI ++  LA +++ +A   Y +T GCMT + +VE
Sbjct:  108 RMLVMDRYRLQPDKWDNRIIRCNNCIQLVSCVCSLLSICISELGDLADLMYCIAQCTYATTQGCMTAQVNVE 179
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13557.2874.1 vs. uniprot
Match: A0A8K1FD78_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FD78_PYTOL)

HSP 1 Score: 84.0 bits (206), Expect = 2.590e-18
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:    1 RMYLMDKFEVQPDPWDNRIIRFNNCLQVLSCICDVASICIRDIRHLARVIHHLADLVYVSTVGCMTVRADVE 216
            R+ +MD+  +QPD WDNRIIR NNCLQV+S +CD+ +IC+   +  A+++H +A   Y ST GCMT + +VE
Sbjct:  108 RLLVMDRHRLQPDEWDNRIIRCNNCLQVVSIVCDLLAICVSGAQDCAQMLHCVAQCTYASTQGCMTAQVNVE 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13557.2874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZB5_ECTSI1.310e-3077.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FZB6_ECTSI1.730e-2875.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FZB7_ECTSI4.720e-2775.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YWZ0_9STRA3.570e-2257.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3H833_9STRA4.970e-2263.08Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
W2NFK8_PHYPR1.260e-1950.70Uncharacterized protein n=2 Tax=Phytophthora paras... [more]
A0A3R7JXJ4_9STRA1.650e-1950.00Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
H3GGH3_PHYRM2.330e-1950.00Uncharacterized protein n=28 Tax=Phytophthora TaxI... [more]
A0A484EEY5_BRELC3.290e-1950.00Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A8K1FD78_PYTOL2.590e-1850.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13557contigH-canaliculatus_F_contig13557:1694..2703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue1.9e-15
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.7302
Preferred nameMCM4
KEGG koko:K02212,ko:K04512,ko:K11238
KEGG Pathwayko03030,ko04011,ko04110,ko04111,ko04113,ko04310,map03030,map04011,map04110,map04111,map04113,map04310
KEGG ModuleM00285
GOsGO:0000003,GO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003688,GO:0003690,GO:0003697,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006267,GO:0006268,GO:0006270,GO:0006271,GO:0006275,GO:0006279,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0010639,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0022607,GO:0022616,GO:0030174,GO:0030874,GO:0030875,GO:0031261,GO:0031298,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032780,GO:0032991,GO:0032993,GO:0033043,GO:0033044,GO:0033260,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0036387,GO:0036388,GO:0042555,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0043565,GO:0043596,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044786,GO:0045005,GO:0045934,GO:0046483,GO:0048478,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051095,GO:0051097,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051336,GO:0051346,GO:0051716,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0071103,GO:0071162,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0097373,GO:1901360,GO:1901363,GO:1901576,GO:1902292,GO:1902299,GO:1902315,GO:1902449,GO:1902450,GO:1902969,GO:1902975,GO:1903046,GO:1903047,GO:1905462,GO:1905463,GO:1905774,GO:1905775,GO:1990837,GO:2000104,GO:2000112,GO:2000113,GO:2001251
EggNOG free text desc.Diaphanous GTPase-binding Domain
EggNOG OGs3QJ9R@4776,COG1241@1,KOG0478@2759,KOG1922@1,KOG1922@2759
EC3.6.4.12
COG Functional cat.TZ
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko03032,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13557.2874.1prot_H-canaliculatus_F_contig13557.2874.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13557 1694..2700 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929099.1281939-CDS-H-canaliculatus_F_contig13557:1693..18791622929099.1281939-CDS-H-canaliculatus_F_contig13557:1693..1879Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13557 1694..1879 -
1696845678.251345-CDS-H-canaliculatus_F_contig13557:1693..18791696845678.251345-CDS-H-canaliculatus_F_contig13557:1693..1879Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13557 1694..1879 -
1622929099.1396313-CDS-H-canaliculatus_F_contig13557:2643..27001622929099.1396313-CDS-H-canaliculatus_F_contig13557:2643..2700Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13557 2644..2700 -
1696845678.262874-CDS-H-canaliculatus_F_contig13557:2643..27001696845678.262874-CDS-H-canaliculatus_F_contig13557:2643..2700Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13557 2644..2700 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929099.1522818-UTR-H-canaliculatus_F_contig13557:2700..27031622929099.1522818-UTR-H-canaliculatus_F_contig13557:2700..2703Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13557 2701..2703 -
1696845678.2715309-UTR-H-canaliculatus_F_contig13557:2700..27031696845678.2715309-UTR-H-canaliculatus_F_contig13557:2700..2703Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13557 2701..2703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13557.2874.1

>prot_H-canaliculatus_F_contig13557.2874.1 ID=prot_H-canaliculatus_F_contig13557.2874.1|Name=mRNA_H-canaliculatus_F_contig13557.2874.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=81bp
MYLMDKFEVQPDPWDNRIIRFNNCLQVLSCICDVASICIRDIRHLARVIH
HLADLVYVSTVGCMTVRADVERCGRKVEGG*
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mRNA from alignment at H-canaliculatus_F_contig13557:1694..2703-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13557.2874.1 ID=mRNA_H-canaliculatus_F_contig13557.2874.1|Name=mRNA_H-canaliculatus_F_contig13557.2874.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1010bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13557:1694..2703- (Hapterophycus canaliculatus Oshoro5f female)
AGGATGTATCTAATGGACAAGTTCGAGGTGCAGCCTGACCCATGGGACAA
TCGGATCATCGTGAGTCTTCCCCGTTGAAGCGGTGCGGCAGATGCTCTTG
GTAGTCGACACCAGGAGTTACTGTGCAATTATGATGCAGGATTCGCTGCA
TACCGAAATATGTTGCGGTGCCGAAAGCTCTTCTTTTTTATGGTGACTCG
TTTACTGCCTTGTCCCTCCTTTTCTGATCTGTGTGCACACGAAGAAGTTC
GACGACCCATGAACACCGTAGTGTCACCCGGCCGGGGTATTGCACAAAAT
TGGTCGTCGGTTGTGGGGGAGTGACCTACCACTAGGCAGGCGCACTTACG
TAAGGCCGAAGCGTTTTGGCGAGCTGCTACGTCGCATCAACAGACCACGT
TCCTTTGGCTGGCCGCCACGCAGCGAAAATGCTTGTTTGCACAGAGGGCG
ATGAGTGTTAGAAAGGCATCTACACGCGCGAGGCCGTTTGATACACATGT
CTCTGATGTTTCCTTTCGCATGAGGTATTTCAGAGATCTGTACCCCCTCC
AACATGCACCCACTCAGCGGCTTCGTCTCGCTGTAGGTTGTTCTGCACAG
CGCTTGCATGGAGAAGATAATGAAAGAACGCCCGGTCGTGTGCTGAAAGT
TCGCTGATGTAAAAGGCAGCGATGCAGTATAGGGAACGGAAGCCTTGCGG
AGTGCACACCGCCACGACTCTCTTATCGTTCTTCACTTTTGCGTTTCTTC
CTCGGCACCTCCACCTCAACCCTAACTATCAATCCCCATCCGCGATCGCG
ATGGCCCCTTCTTTTTGCTGGCAGCGCTTCAACAACTGCTTGCAGGTGCT
ATCGTGCATCTGCGACGTCGCCTCCATCTGCATCCGAGATATCCGCCATC
TGGCGAGAGTCATCCACCATCTCGCCGACCTTGTCTACGTCTCCACCGTA
GGCTGCATGACGGTGAGGGCGGATGTAGAAAGATGTGGAAGAAAGGTGGA
GGGCGGCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13557:1694..2703-

>mRNA_H-canaliculatus_F_contig13557.2874.1 ID=mRNA_H-canaliculatus_F_contig13557.2874.1|Name=mRNA_H-canaliculatus_F_contig13557.2874.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=486bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13557:1694..2703- (Hapterophycus canaliculatus Oshoro5f female)
ATGTATCTAATGGACAAGTTCGAGGTGCAGCCTGACCCATGGGACAATCG
GATCATCATGTATCTAATGGACAAGTTCGAGGTGCAGCCTGACCCATGGG
ACAATCGGATCATCCGCTTCAACAACTGCTTGCAGGTGCTATCGTGCATC
TGCGACGTCGCCTCCATCTGCATCCGAGATATCCGCCATCTGGCGAGAGT
CATCCACCATCTCGCCGACCTTGTCTACGTCTCCACCGTAGGCTGCATGA
CGGTGAGGGCGGATGTAGAAAGATGTGGAAGAAAGGTGGAGGGCGGCTAG
CGCTTCAACAACTGCTTGCAGGTGCTATCGTGCATCTGCGACGTCGCCTC
CATCTGCATCCGAGATATCCGCCATCTGGCGAGAGTCATCCACCATCTCG
CCGACCTTGTCTACGTCTCCACCGTAGGCTGCATGACGGTGAGGGCGGAT
GTAGAAAGATGTGGAAGAAAGGTGGAGGGCGGCTAG
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