mRNA_H-canaliculatus_F_contig13547.2871.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13547.2871.1
Unique NamemRNA_H-canaliculatus_F_contig13547.2871.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13547.2871.1 vs. uniprot
Match: D8LL70_ECTSI (DUF4524 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL70_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 3.860e-57
Identity = 149/259 (57.53%), Postives = 164/259 (63.32%), Query Frame = 1 
Query:    1 SAVVIEPSGACFTHVREDGSLSRQLSDFCRRDLVPHLAAVCRFRNAHSPRPYLSHRIHGTQEQQGENSXXXXXXXXXXXKRA-TLHPVAHWPAVG------SGQGSSAALCAVRADGAVEVRAAGGNARLTLSASRTVAEVDYAAAVPGSTAHAAAVG*WVTRRFLVG---SPP-SGVPPEFSHALEVALRASPSSSAAIGGR-------------GGVAQ-EADTAGAAAGGAVVGVGG-RGLVASELPRPEGSPDHA 699
            SAVV+EPSGACF  VR+DG+  RQLSDFCRRDL+PH+AAV  FRNAHSPRPYLS RIH T EQ+  +S   XXXXXXXX    T   +AHWPA        S   SS+      ADG+VEVRAAGGNARL LSAS TVAEVDYA A+P     A     WVTRRFLVG   +PP   VPPEFSHAL VA+R S S+                    G V+      A AAAGG V G GG RGLVA ELPRPE  PDHA
Sbjct:   37 SAVVLEPSGACFAEVRQDGTCHRQLSDFCRRDLIPHVAAVSSFRNAHSPRPYLSQRIHATLEQETHSSNGTXXXXXXXXXXXXTPSRIAHWPAAAEPTCRHSTSNSSSTFVVRGADGSVEVRAAGGNARLALSASGTVAEVDYAVALPPGPGAAGGGRVWVTRRFLVGGSAAPPFDDVPPEFSHALSVAVRESRSAXXXXXXXXXXXXXXXXXXXXGDVSLGRVSPAAAAAGGTVSGKGGERGLVAVELPRPEERPDHA 295
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BLAST of mRNA_H-canaliculatus_F_contig13547.2871.1 vs. uniprot
Match: A0A6H5KVD6_9PHAE (DUF4524 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD6_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.580e-37
Identity = 98/148 (66.22%), Postives = 106/148 (71.62%), Query Frame = 1 
Query:    1 SAVVIEPSGACFTHVREDGSLSRQLSDFCRRDLVPHLAAVCRFRNAHSPRPYLSHRIHGTQEQQGENSXXXXXXXXXXXKRATLHP-VAHWPAVGS-----GQGSSAALCAVR-ADGAVEVRAAGGNARLTLSASRTVAEVDYAAAVP 423
            SAVV+EPSGACFT VR+DG+  RQLSDFCRRDL+PH+AA   FRNAHSPRPYLS RIH T EQ   NS XXXXXXXXXX        +AHWPA              +   VR ADG VEVRAAGGNARLTLSAS TVAEVDYA A+P
Sbjct:   57 SAVVLEPSGACFTQVRQDGTCHRQLSDFCRRDLIPHVAAASSFRNAHSPRPYLSQRIHATLEQGPHNSSXXXXXXXXXXXXXXXPSRIAHWPAAAEPXXXXXXXXXXSTFVVRGADGRVEVRAAGGNARLTLSASGTVAEVDYAVALP 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13547.2871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL70_ECTSI3.860e-5757.53DUF4524 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KVD6_9PHAE3.580e-3766.22DUF4524 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13547contigH-canaliculatus_F_contig13547:258..1960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF4524
Ec32 orthologEc-24_002720.1
Exons3
Model size699
Cds size456
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13547.2871.1prot_H-canaliculatus_F_contig13547.2871.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13547 501..1960 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929098.4056778-UTR-H-canaliculatus_F_contig13547:257..5001622929098.4056778-UTR-H-canaliculatus_F_contig13547:257..500Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13547 258..500 -
1696845677.965702-UTR-H-canaliculatus_F_contig13547:257..5001696845677.965702-UTR-H-canaliculatus_F_contig13547:257..500Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13547 258..500 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929098.42193-CDS-H-canaliculatus_F_contig13547:500..5021622929098.42193-CDS-H-canaliculatus_F_contig13547:500..502Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13547 501..502 -
1696845677.9775665-CDS-H-canaliculatus_F_contig13547:500..5021696845677.9775665-CDS-H-canaliculatus_F_contig13547:500..502Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13547 501..502 -
1622929098.4364066-CDS-H-canaliculatus_F_contig13547:631..10341622929098.4364066-CDS-H-canaliculatus_F_contig13547:631..1034Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13547 632..1034 -
1696845677.9913304-CDS-H-canaliculatus_F_contig13547:631..10341696845677.9913304-CDS-H-canaliculatus_F_contig13547:631..1034Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13547 632..1034 -
1622929098.4592812-CDS-H-canaliculatus_F_contig13547:1909..19601622929098.4592812-CDS-H-canaliculatus_F_contig13547:1909..1960Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13547 1910..1960 -
1696845677.9996152-CDS-H-canaliculatus_F_contig13547:1909..19601696845677.9996152-CDS-H-canaliculatus_F_contig13547:1909..1960Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13547 1910..1960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13547.2871.1

>prot_H-canaliculatus_F_contig13547.2871.1 ID=prot_H-canaliculatus_F_contig13547.2871.1|Name=mRNA_H-canaliculatus_F_contig13547.2871.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=152bp
SAVVIEPSGACFTHVREDGSLSRQLSDFCRRDLVPHLAAVCRFRNAHSPR
PYLSHRIHGTQEQQGENSSTSSTSSSRRRKRATLHPVAHWPAVGSGQGSS
AALCAVRADGAVEVRAAGGNARLTLSASRTVAEVDYAAAVPGSTAHAAAV
G*
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mRNA from alignment at H-canaliculatus_F_contig13547:258..1960-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13547.2871.1 ID=mRNA_H-canaliculatus_F_contig13547.2871.1|Name=mRNA_H-canaliculatus_F_contig13547.2871.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1703bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13547:258..1960- (Hapterophycus canaliculatus Oshoro5f female)
TCTGCGGTAGTAATTGAGCCCTCCGGAGCGTGCTTCACGCATGTGCGCGA
GGTCAGACGAGCGACAGCAGTAGCATTCGGATCTCTTTTGCGTGTAGATT
GAGGCTTGCGAGGAGAAAATGCCTGTGTCTGCAAGTTTGGGTGAGCACTT
CCTCTGTCTGGCGCGATTTTGCTTGCGGGCTGAACTCAGCAATCCTACAG
CAGTACAGCAAGTACATGTTCAACCGCGTGACCCATCCGTCTGGCGAGAT
GCCTGAATGCTTCTTAAATGTATCACGGTCACCCTTCACGCCGCTTCGTT
GCGTAGTGCTCGTGACAGCGGCTGGCCATGTCGATGACACCACAAGCTCC
AACCCTCTAAACGTATGAGGACAAGCGGCAAGCCGCGAGTTGTCCGAAAT
AAAACGGAGAGACGGCGGCGCAATCAGCGCCGCATCACCGTGCCGTTGTT
GTCGCCGCCTGGTTTCCCTCTTCAATAGAGTTTTCGCTCAAACCACTCAG
TCATGTTCACGTTCGTCTTAGCCAGAAACCATGAGAAATAAGTGAGTTGT
CGAAGCGCTTGGCCGGGATTCAGTATGAGAGGTCTCCATGTGCCGTCTTC
CACAAGTCGTTGTGCCCTTTTCAGAACTCGGCATTATTGGAAAATACTCC
CAGCATTTGAGTTGGTGATGAGCTCTAAATTTCGCCTTCACCACGACACT
TCACGTGATGGCAACAGCGCATCGTGTTCTATAGGAGCCGCAATTCTGTT
GCTAACGAAGTCGACGACACTCCTAGAGGCTTGCCCCTCGGTCAACACTG
GCTGACCGCGCCAGGAGATTCCATCAAACGCAGCGCCATGGTGTCAACGT
GCCCAGCACATCATGCATCAGCGTGCGCACTCCCCACTCCGCCTCCACCC
CCGCCTCCGCCTCCGCCTCAACACAGGACGGGTCCTTATCCCGCCAGCTC
TCCGATTTCTGCCGACGAGACCTGGTCCCTCACCTGGCTGCTGTTTGCAG
ATTCAGGAACGCCCACAGCCCCCGCCCTTACCTGAGCCACAGGATACACG
GCACGCAGGAGCAGCAGGGAGAAAACAGCAGCACCAGCAGCACCAGCAGC
AGCAGGCGGAGGAAGAGAGCGACGCTCCACCCCGTCGCTCATTGGCCGGC
GGTTGGCAGCGGCCAGGGTTCGTCGGCGGCCCTGTGCGCCGTTCGCGCAG
ACGGGGCTGTCGAGGTTCGCGCCGCCGGCGGCAACGCGAGGCTGACCCTC
TCCGCCTCGCGCACGGTAGCGGAGGTCGACTACGCCGCCGCGGTCCCCGG
CAGTACCGCGCACGCCGCCGCCGTGGGTTGTTCGGCGACGGTGACGCCGG
CCAAAGGCACACAGCGTGAGTGGAGAGAGGCAGCCGCGGACGCGGTTCCC
TCCCTCCAGGACGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGAC
GGACGGAGAGTGGGTTACCCGACGATTTCTCGTCGGCTCGCCGCCCTCCG
GCGTACCCCCGGAGTTCTCGCACGCGCTCGAGGTCGCGCTTCGTGCATCA
CCATCTTCGTCTGCTGCGATCGGCGGGAGAGGAGGGGTAGCTCAGGAGGC
GGACACGGCGGGAGCGGCTGCAGGTGGAGCCGTGGTTGGGGTGGGCGGGA
GGGGACTGGTAGCCTCCGAGCTGCCGCGGCCGGAGGGGAGCCCGGACCAT
GCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13547:258..1960-

>mRNA_H-canaliculatus_F_contig13547.2871.1 ID=mRNA_H-canaliculatus_F_contig13547.2871.1|Name=mRNA_H-canaliculatus_F_contig13547.2871.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=912bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13547:258..1960- (Hapterophycus canaliculatus Oshoro5f female)
TCTGCGGTAGTAATTGAGCCCTCCGGAGCGTGCTTCACGCATGTGCGCGA
GTCTGCGGTAGTAATTGAGCCCTCCGGAGCGTGCTTCACGCATGTGCGCG
AGGACGGGTCCTTATCCCGCCAGCTCTCCGATTTCTGCCGACGAGACCTG
GTCCCTCACCTGGCTGCTGTTTGCAGATTCAGGAACGCCCACAGCCCCCG
CCCTTACCTGAGCCACAGGATACACGGCACGCAGGAGCAGCAGGGAGAAA
ACAGCAGCACCAGCAGCACCAGCAGCAGCAGGCGGAGGAAGAGAGCGACG
CTCCACCCCGTCGCTCATTGGCCGGCGGTTGGCAGCGGCCAGGGTTCGTC
GGCGGCCCTGTGCGCCGTTCGCGCAGACGGGGCTGTCGAGGTTCGCGCCG
CCGGCGGCAACGCGAGGCTGACCCTCTCCGCCTCGCGCACGGTAGCGGAG
GTCGACTACGCCGCCGCGGTCCCCGGCAGTACCGCGCACGCCGCCGCCGT
GGGTTGACGGGTCCTTATCCCGCCAGCTCTCCGATTTCTGCCGACGAGAC
CTGGTCCCTCACCTGGCTGCTGTTTGCAGATTCAGGAACGCCCACAGCCC
CCGCCCTTACCTGAGCCACAGGATACACGGCACGCAGGAGCAGCAGGGAG
AAAACAGCAGCACCAGCAGCACCAGCAGCAGCAGGCGGAGGAAGAGAGCG
ACGCTCCACCCCGTCGCTCATTGGCCGGCGGTTGGCAGCGGCCAGGGTTC
GTCGGCGGCCCTGTGCGCCGTTCGCGCAGACGGGGCTGTCGAGGTTCGCG
CCGCCGGCGGCAACGCGAGGCTGACCCTCTCCGCCTCGCGCACGGTAGCG
GAGGTCGACTACGCCGCCGCGGTCCCCGGCAGTACCGCGCACGCCGCCGC
CGTGGGTTAGAG
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