mRNA_H-canaliculatus_F_contig13546.2869.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13546.2869.1
Unique NamemRNA_H-canaliculatus_F_contig13546.2869.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13546.2869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13546contigH-canaliculatus_F_contig13546:989..1709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size225
Cds size225
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13546.2869.1prot_H-canaliculatus_F_contig13546.2869.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13546 989..1709 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929098.1929626-CDS-H-canaliculatus_F_contig13546:988..10741622929098.1929626-CDS-H-canaliculatus_F_contig13546:988..1074Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13546 989..1074 +
1696845677.9127905-CDS-H-canaliculatus_F_contig13546:988..10741696845677.9127905-CDS-H-canaliculatus_F_contig13546:988..1074Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13546 989..1074 +
1622929098.2099674-CDS-H-canaliculatus_F_contig13546:1341..14321622929098.2099674-CDS-H-canaliculatus_F_contig13546:1341..1432Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13546 1342..1432 +
1696845677.9227567-CDS-H-canaliculatus_F_contig13546:1341..14321696845677.9227567-CDS-H-canaliculatus_F_contig13546:1341..1432Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13546 1342..1432 +
1622929098.2259176-CDS-H-canaliculatus_F_contig13546:1661..17091622929098.2259176-CDS-H-canaliculatus_F_contig13546:1661..1709Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13546 1662..1709 +
1696845677.930541-CDS-H-canaliculatus_F_contig13546:1661..17091696845677.930541-CDS-H-canaliculatus_F_contig13546:1661..1709Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13546 1662..1709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13546.2869.1

>prot_H-canaliculatus_F_contig13546.2869.1 ID=prot_H-canaliculatus_F_contig13546.2869.1|Name=mRNA_H-canaliculatus_F_contig13546.2869.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=75bp
RCGWWRTGAVPNQRLVPRVPPRTTAALHSLGHAVLSGWCWMTVPLRACRT
LPSSSVSPSRWRSTCAVFSGRTGRA
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mRNA from alignment at H-canaliculatus_F_contig13546:989..1709+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13546.2869.1 ID=mRNA_H-canaliculatus_F_contig13546.2869.1|Name=mRNA_H-canaliculatus_F_contig13546.2869.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=721bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13546:989..1709+ (Hapterophycus canaliculatus Oshoro5f female)
AGATGCGGCTGGTGGCGTACCGGGGCGGTGCCGAACCAGCGGCTGGTGCC
TCGCGTGCCACCCCGGACGACCGCCGCCCTCCACAGGTACAGCGCGCGAT
TTCGGGTGCTCGTATAGGTGGTTTGCTTCGTCTCCCTGGCTGCTATCGTG
GCTCCATGCTGGTAATAAAATACAAAGCGTCTTGCGCGAGGACTTCTTGT
TGAAGCACGCTCAACATCTCCGATGCTGATCATCATGCGTGCCGCTTCGT
CCCGGCGTGTTGGAAGCTTGGCGCCTCGCTGATGGTCTGATCGCCTCGTC
CGTTGACTTGGTTCTTGTTCTCCGCCGACTCCTCCTCCGTGTCCTTGGTA
CAGTTTGGGCCATGCCGTCCTCTCCGGCTGGTGCTGGATGACTGTACCAC
TCCGAGCCTGCCGCACTTTGCCTTCCAGCTCGGTCAGCCCATCGGTGAGC
TGTTCGCAATCGCGTCTACGGGCGTGGTCGGTGGTAACGGTATGCAGGGA
GGCGTATGCAGGGGCAGCGCAATCATGGCATACCAACGATGTGCGGCTGC
TGTTGGCTCCTGCCCCCCTTGATCGTCCTCTGTGCCGTGTGTGTGGTGTT
TTTTTAACTCGATAGCTGCTGGAGTAACGGACTTCTTTCGTGTGCCGTCA
CTTTCAATACCCCTACGCCGCAGCGATGGCGTTCGACGTGCGCTGTTTTT
TCTGGGCGCACTGGTCGGGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13546:989..1709+

>mRNA_H-canaliculatus_F_contig13546.2869.1 ID=mRNA_H-canaliculatus_F_contig13546.2869.1|Name=mRNA_H-canaliculatus_F_contig13546.2869.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=450bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13546:989..1709+ (Hapterophycus canaliculatus Oshoro5f female)
AGATGCGGCTGGTGGCGTACCGGGGCGGTGCCGAACCAGCGGCTGGTGCC
TCGCGTGCCACCCCGGACGACCGCCGCCCTCCACAGAGATGCGGCTGGTG
GCGTACCGGGGCGGTGCCGAACCAGCGGCTGGTGCCTCGCGTGCCACCCC
GGACGACCGCCGCCCTCCACAGTTTGGGCCATGCCGTCCTCTCCGGCTGG
TGCTGGATGACTGTACCACTCCGAGCCTGCCGCACTTTGCCTTCCAGCTC
GGTCAGCCCATCGTTTGGGCCATGCCGTCCTCTCCGGCTGGTGCTGGATG
ACTGTACCACTCCGAGCCTGCCGCACTTTGCCTTCCAGCTCGGTCAGCCC
ATCGCGATGGCGTTCGACGTGCGCTGTTTTTTCTGGGCGCACTGGTCGGG
CTCGATGGCGTTCGACGTGCGCTGTTTTTTCTGGGCGCACTGGTCGGGCT
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