mRNA_H-canaliculatus_F_contig13531.2864.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13531.2864.1
Unique NamemRNA_H-canaliculatus_F_contig13531.2864.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13531.2864.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 320 bits (820), Expect = 2.380e-98
Identity = 153/193 (79.27%), Postives = 172/193 (89.12%), Query Frame = 1 
Query:    1 LAVELDAFHAMQRLSKLILKSHGACRVYLARLRDAFFKVNADDRAAVQAALLLAGMSQEEVDAKKAKDWAYFLKRCRRMIPPLAELAKRFDLVNKVHGGLLDNKTKQPLPRPEALESAKRLREHIVADCCSDAPKQALYFEAGRDPETLCALFRCVRGTNDLEGYHFHMRLLVAWCLSPRLAHLLLLEHNYRW 579
            L V+LD FHAMQR+SKLILKSHGACR YLARLRDAFFKVNA+D AAV+AAL  AGMS+EEV+AKKAKDW YFLKRCRR+IP  AEL +RFDLVN ++GGL+D KTKQPL R EALE+ KRLR HI+ DCCSD+P +ALYFEAG+D ETLC LFRC+RGTNDLEGYH HMRLLVAWC+SPRLAHLLLLE+NYRW
Sbjct:  702 LVVKLDTFHAMQRVSKLILKSHGACRAYLARLRDAFFKVNAEDLAAVEAALRQAGMSKEEVEAKKAKDWVYFLKRCRRLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRW 894
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BLAST of mRNA_H-canaliculatus_F_contig13531.2864.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 2.990e-93
Identity = 142/184 (77.17%), Postives = 159/184 (86.41%), Query Frame = 1 
Query:   28 AMQRLSKLILKSHGACRVYLARLRDAFFKVNADDRAAVQAALLLAGMSQEEVDAKKAKDWAYFLKRCRRMIPPLAELAKRFDLVNKVHGGLLDNKTKQPLPRPEALESAKRLREHIVADCCSDAPKQALYFEAGRDPETLCALFRCVRGTNDLEGYHFHMRLLVAWCLSPRLAHLLLLEHNYRW 579
            A   +SKLILKSHGACR YLARLRD FFKVNA+D AAV+AAL  AGMS+EEV+AKK KDW  FLKRCRR+IP  AEL KRFD+VN ++GGLLD KTKQPL R EALE+ KRLR HI+ DCCSDAP +ALYFEAG+D ETLC LFRC+RGTNDLEG+H HMRLLVAWC+SPRLAHLLLLE+NYRW
Sbjct:  313 AAGEVSKLILKSHGACRAYLARLRDEFFKVNAEDLAAVEAALRQAGMSKEEVEAKKGKDWVLFLKRCRRLIPRPAELLKRFDVVNNLYGGLLDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDAPNEALYFEAGKDAETLCPLFRCIRGTNDLEGFHLHMRLLVAWCISPRLAHLLLLEYNYRW 496
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BLAST of mRNA_H-canaliculatus_F_contig13531.2864.1 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 2.700e-56
Identity = 89/116 (76.72%), Postives = 102/116 (87.93%), Query Frame = 1 
Query:  232 RMIPPLAELAKRFDLVNKVHGGLLDNKTKQPLPRPEALESAKRLREHIVADCCSDAPKQALYFEAGRDPETLCALFRCVRGTNDLEGYHFHMRLLVAWCLSPRLAHLLLLEHNYRW 579
            R+IP  AEL +RFDLVN ++GGL+D KTKQPL R EALE+ KRLR HI+ DCCSD+P +ALYFEAG+D ETLC LFRC+RGTNDLEGYH HMRLLVAWC+SPRLAHLLLLE+NYRW
Sbjct:  206 RLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRW 321
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BLAST of mRNA_H-canaliculatus_F_contig13531.2864.1 vs. uniprot
Match: A0A1Y2A9B5_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2A9B5_9FUNG)

HSP 1 Score: 192 bits (488), Expect = 1.470e-53
Identity = 104/206 (50.49%), Postives = 131/206 (63.59%), Query Frame = 1 
Query:    1 LAVELDAFHAMQRLSKLILKSHGACRVYLARLRDAFFKVNADDRAAVQAALLLAGMSQEEVDAKKAKDWAYFLKRCRRMIPPLAELAKRFDLVNKVHGGLLDNKTKQPLPRPEALESAKRLREHIVADCCSDAPKQALYFEAGRDPETLCALFRCVRGTNDLEGYHFHMR-LLVAWCLSPRLAHLLLLEHNYRWIYVRASRTAELP 615
            L V LD FHAM R++K +LKSHGA + ++ARLRDAFF ++ DD   V AAL  AG+S +E++AKK  DWA+FLK C R+IP   EL KR+D V      +LD+KT +PL R    +  + LR+HI   C SD P   LYF  GR  + L  ++RC RGTN  EGYH HMR LL  +  SP L HLLLLE N+RW    A +   LP
Sbjct:  433 LKVRLDCFHAMNRINKTLLKSHGAYKPFMARLRDAFFLISKDDLDLVVAALKTAGLSDDEIEAKKDYDWAFFLKYCHRLIPCKEELLKRYDFVCNTFQDILDSKTNEPLFRSNTKKEVRNLRKHIQNGCLSDVPDIPLYFLEGRTSQGL-PIYRCARGTNSNEGYHRHMRKLLHHYASSPMLLHLLLLEFNFRWNIRMAVKNRGLP 637
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BLAST of mRNA_H-canaliculatus_F_contig13531.2864.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 3.540e-51
Identity = 98/209 (46.89%), Postives = 135/209 (64.59%), Query Frame = 1 
Query:    7 VELDAFHAMQRLSKLILKSHGACRVYLARLRDAFFKVNADDRAAVQAALLLAGMSQEEVDAKKAKDWAYFLKRCRRMIPPLAELAKRFDLVNKVHGGLLDNKTKQPLPRPEALESAKRLREHIVADCCSDAPKQALYFEAGRDPETLCALFRCVRGTNDLEGYHFHMR-LLVAWCLSPRLAHLLLLEHNYRWIYVRASRTAELPRLSGD 630
            V LD FHA+ RLS+ I K HGA R  +ARLRDA F VN DD   ++  L   GMS  +V   K +DW+YFL++CRR++PP +EL KRFD V +  G  +DN +K+ L RP+++++   LR+HIVA C SD    A+Y+  G+  + L   +RCVRGTND+EGYH ++R LL ++C SP LA  +LLE N+RW      +   LP   G+
Sbjct:  545 VRLDLFHALNRLSRTIKKGHGAFRPIMARLRDACFLVNRDDVLQIEKVLERRGMSPAQVQQAKDQDWSYFLRKCRRLVPPPSELLKRFDKVVQEFGNCVDNISKEVLLRPKSMKAVSLLRKHIVAGCLSDPDGVAMYYAVGKTTDGLVN-YRCVRGTNDVEGYHRYLRTLLASYCASPALAQSVLLEFNFRWNLKMMVKNRGLPAELGE 752
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13531.2864.1 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.680e-46
Identity = 97/214 (45.33%), Postives = 135/214 (63.08%), Query Frame = 1 
Query:    1 LAVELDAFHAMQRLSKLILKSHGACRVYLARLRDAFFKVNADD---RAAVQAALLLAGMSQEEVDAKKAKDWAYFLKRCRRMIPPLAELAKRFDLVNKVHGGLLDNKTKQPLPRPEALESAKRLREHIVADCCSDAPKQALYFEAGRDPETLCALFRCVRGTNDLEGYHFHMR-LLVAWCLSPRLAHLLLLEHNYRWIYVRASRTAELPRLSGD 630
            L V LD FHA+QR+SKL  KSHGA + ++ARLRDA F VN DD    +AV+ AL   GM+ E V   K K+W +F++ CRR++P    L +RF+LV +    ++D K+ + L RP A ++ + LR+HI + C SD  +  LY+ +G++   +    RCVRGTN  EGYH ++R LL  +C SP LAH +LLE NYRW    A +   LPR  G+
Sbjct:  176 LKVRLDIFHALQRVSKLCKKSHGAFKPFMARLRDACFIVNLDDIKEASAVEQALAGKGMTPEAVVEYKDKNWTFFVRNCRRLVPEQKRLLERFNLVIRQFQDVVDAKSGETLLRPCARQAVELLRKHIESGCLSDPERVPLYYTSGKNSAGITTR-RCVRGTNCTEGYHRYVRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGE 388
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13531.2864.1 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 2.600e-44
Identity = 98/214 (45.79%), Postives = 131/214 (61.21%), Query Frame = 1 
Query:    1 LAVELDAFHAMQRLSKLILKSHGACRVYLARLRDAFFKVNADD---RAAVQAALLLAGMSQEEVDAKKAKDWAYFLKRCRRMIPPLAELAKRFDLVNKVHGGLLDNKTKQPLPRPEALESAKRLREHIVADCCSDAPKQALYFEAGRDPETLCALFRCVRGTNDLEGYHFHMR-LLVAWCLSPRLAHLLLLEHNYRWIYVRASRTAELPRLSGD 630
            L V LD FHA+QR+SKL  KSHGA R ++ARLRDA F VN DD    +AV+ AL   GM+ E V   K K+W +F++ CRR++P    L +RF+LV +    ++D K+ + L RP A ++ + LR+HI + C SD  +  LY+       T     RCVRGTN  EGYH ++R LL  +C SP LAH +LLE NYRW    A +   LPR  G+
Sbjct:  176 LKVRLDIFHALQRVSKLCKKSHGAFRPFMARLRDACFIVNLDDIKEASAVEQALAGKGMTPEAVVEYKDKNWTFFVRNCRRLVPEQKRLLERFNLVIRQFQDVVDAKSGETLLRPCARQAVELLRKHIESGCLSDPERVPLYYTKSAGITTR----RCVRGTNCTEGYHRYLRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGE 385
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BLAST of mRNA_H-canaliculatus_F_contig13531.2864.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 3.310e-44
Identity = 90/206 (43.69%), Postives = 128/206 (62.14%), Query Frame = 1 
Query:    4 AVELDAFHAMQRLSKLILKSHGACRVYLARLRDAFFKVNADD-------------RAAVQAALLLAGMSQEEVDAKKAKDWAYFLKRCRRMIPPLAELAKRFDLVNKVHGGLLDNKTKQPLPRPEALESAKRLREHIVADCCSDAPKQALYFEAGRDPETLCALFRCVRGTNDLEGYHFHMR-LLVAWCLSPRLAHLLLLEHNYRW 579
            +V LD FH + R+S++  KSHGA + ++ARLRDA F VN DD               +V+  L   GM  EEV     ++W++FL+  RR++P    L KRFD V +  GG +DN + + L RP+A+++ ++LR+HI  DC SD    A+YF  G++   L   +RCVRGTND+EGYH ++R LL ++C SP LA  +LLE NYRW
Sbjct:  487 SVRLDPFHTLNRISRMTKKSHGAFKPFMARLRDACFLVNRDDVYQASLKPFGWIWERSVEMTLEARGMKPEEVQQLTEQNWSFFLRSSRRLVPRRDVLLKRFDRVIEEFGGCVDNTSGEVLLRPKAMKAVRQLRKHIENDCLSDPDGMAMYFAIGKNKHGLTD-YRCVRGTNDVEGYHRYLRTLLASYCASPSLAQSVLLEFNYRW 691
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13531.2864.1 vs. uniprot
Match: D7FIV1_ECTSI (Similar to Werner syndrome protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV1_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.840e-33
Identity = 76/174 (43.68%), Postives = 109/174 (62.64%), Query Frame = 1 
Query:    1 LAVELDAFHAMQRLSKLILKSHGACRVYLARLRDAFFKVNADDRAAVQAALLLAGMSQEEVDAKKAKDWAYFLKRCRRMIPPLAELAKRFDLVNKVHGGLLDNKTKQPLPRPEALESAKRLREHIVADCCSDAPKQALYFEAGRDPETLCALFRCVRGTNDLE-GYHFHMRLLV 519
            L V LD FHA+QR+S+L  KSHGA + ++ARLRDA F VN DD   V+ AL   GM+ E V   K K+W YFL+ CRR++P    L +RF+ V      ++D K+ + L RP+A+++  +LR+HI +DC SD     LY+  G++   +    RCVRGTN  E  Y +++R+ V
Sbjct:  498 LQVRLDIFHALQRISRLCKKSHGAFKPFMARLRDACFIVNQDDIKEVEQALGSKGMTPEAVAEYKDKNWTYFLRNCRRLVPERQRLLERFNSVINQFCNVVDAKSGEVLIRPKAMQAVDQLRKHIESDCLSDPHGVPLYYTTGQNAAGITTR-RCVRGTNYTEFNYRWNIRMAV 670
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13531.2864.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 3.960e-30
Identity = 64/147 (43.54%), Postives = 95/147 (64.63%), Query Frame = 1 
Query:  139 VQAALLLAGMSQEEVDAKKAKDWAYFLKRCRRMIPPLAELAKRFDLVNKVHGGLLDNKTKQPLPRPEALESAKRLREHIVADCCSDAPKQALYFEAGRDPETLCALFRCVRGTNDLEGYHFHMRLLVAWCLSPRLAHLLLLEHNYRW 579
            V+  L   GM+  + +  K  +W++FLKRCRR++PP +EL K FD V +  G  +DN +K+ L RP+++++ + LR+HIVA C SD    A+Y+  G+  + L   +RCVRGTND+EGYH     L ++  SP LA  +LLE N+RW
Sbjct:  837 VEKVLECRGMTPAQAEQVKDHNWSFFLKRCRRLVPPPSELLKPFDKVVEEFGNCVDNVSKEALLRPKSMKAVRLLRKHIVAGCLSDPDGVAMYYAIGKTTDGLVR-YRCVRGTNDVEGYH-----LASYSASPALAQSVLLEFNFRW 977
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13531.2864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE2.380e-9879.273'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KEU8_9PHAE2.990e-9377.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD89_9PHAE2.700e-5676.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y2A9B5_9FUNG1.470e-5350.493'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7G3Q9_ECTSI3.540e-5146.893'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JPK9_9PHAE1.680e-4645.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLP1_9PHAE2.600e-4445.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRJ6_9PHAE3.310e-4443.693'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7FIV1_ECTSI1.840e-3343.68Similar to Werner syndrome protein n=1 Tax=Ectocar... [more]
A0A6H5K4M0_9PHAE3.960e-3043.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13531contigH-canaliculatus_F_contig13531:1587..2462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.8
Seed ortholog evalue1.1e-41
Seed eggNOG ortholog2880.D7G3Q9
Preferred nameWRN
KEGG koko:K10900,ko:K20777
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Hectar predicted targeting categorymitochondrion
Exons2
Model size686
Cds size654
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13531.2864.1prot_H-canaliculatus_F_contig13531.2864.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13531 1587..2432 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929097.2177489-CDS-H-canaliculatus_F_contig13531:1586..20371622929097.2177489-CDS-H-canaliculatus_F_contig13531:1586..2037Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13531 1587..2037 -
1696845677.5082889-CDS-H-canaliculatus_F_contig13531:1586..20371696845677.5082889-CDS-H-canaliculatus_F_contig13531:1586..2037Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13531 1587..2037 -
1622929097.2292938-CDS-H-canaliculatus_F_contig13531:2229..24321622929097.2292938-CDS-H-canaliculatus_F_contig13531:2229..2432Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13531 2230..2432 -
1696845677.5225198-CDS-H-canaliculatus_F_contig13531:2229..24321696845677.5225198-CDS-H-canaliculatus_F_contig13531:2229..2432Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13531 2230..2432 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929097.2433295-UTR-H-canaliculatus_F_contig13531:2432..24621622929097.2433295-UTR-H-canaliculatus_F_contig13531:2432..2462Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13531 2433..2462 -
1696845677.5326362-UTR-H-canaliculatus_F_contig13531:2432..24621696845677.5326362-UTR-H-canaliculatus_F_contig13531:2432..2462Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13531 2433..2462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13531.2864.1

>prot_H-canaliculatus_F_contig13531.2864.1 ID=prot_H-canaliculatus_F_contig13531.2864.1|Name=mRNA_H-canaliculatus_F_contig13531.2864.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=218bp
MQRLSKLILKSHGACRVYLARLRDAFFKVNADDRAAVQAALLLAGMSQEE
VDAKKAKDWAYFLKRCRRMIPPLAELAKRFDLVNKVHGGLLDNKTKQPLP
RPEALESAKRLREHIVADCCSDAPKQALYFEAGRDPETLCALFRCVRGTN
DLEGYHFHMRLLVAWCLSPRLAHLLLLEHNYRWIYVRASRTAELPRLSGD
STTSRCSRPFRYFSTCRT
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mRNA from alignment at H-canaliculatus_F_contig13531:1587..2462-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13531.2864.1 ID=mRNA_H-canaliculatus_F_contig13531.2864.1|Name=mRNA_H-canaliculatus_F_contig13531.2864.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=876bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13531:1587..2462- (Hapterophycus canaliculatus Oshoro5f female)
CTCGCTGTCGAGCTCGACGCTTTCCACGCGATGCAACGGCTCAGCAAGCT
TATCCTCAAGAGCCACGGCGCGTGCCGTGTATACTTGGCGCGATTGAGAG
ATGCCTTTTTCAAGGTCAATGCAGATGATCGCGCTGCCGTTCAGGCAGCC
CTCTTGTTGGCGGGAATGAGCCAAGAGGAGGTCGACGCCAAAAAGGCTAA
GGATTGGGCTTATTTTCTGAAACGATGCCGAAGGTGAGCCCGTTTGGCGC
TCATTTTTTCTTCGAGTTAAACTTCACCAAATTAAATAACACCCAAGTGG
GTGAATCGGTCGATTCGTAAAGTATTCAACACCTCTTCAATTCTCAGGTT
CTGTCGAACGGTGTGTGCCTTGTTTGCTGTGTCCACATCCCCCGCGCAAA
AAACGGCGACTTTTGCGGTTTGCAGGATGATCCCGCCTCTGGCAGAGTTG
GCCAAGCGCTTCGACTTAGTCAACAAGGTGCACGGTGGGCTCCTTGACAA
CAAGACGAAGCAGCCGCTGCCTCGCCCAGAAGCACTGGAGTCCGCCAAGC
GTCTCAGAGAACACATTGTGGCAGATTGTTGTAGTGACGCCCCCAAGCAA
GCGCTGTACTTCGAGGCTGGGAGGGATCCGGAGACTCTGTGTGCGCTGTT
CCGTTGTGTCCGAGGCACAAACGACCTAGAGGGGTACCACTTCCACATGC
GCTTATTGGTTGCATGGTGTTTGTCACCCAGGCTTGCCCATCTCCTCCTT
CTCGAGCACAACTACAGATGGATTTACGTCAGAGCATCAAGAACCGCGGA
GTTACCGAGGTTGTCGGGGGATTCTACGACCAGCCGATGCTCGAGGCCAT
TCAGGTATTTTTCCACATGCCGTACA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13531:1587..2462-

>mRNA_H-canaliculatus_F_contig13531.2864.1 ID=mRNA_H-canaliculatus_F_contig13531.2864.1|Name=mRNA_H-canaliculatus_F_contig13531.2864.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1308bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13531:1587..2462- (Hapterophycus canaliculatus Oshoro5f female)
ATGCAACGGCTCAGCAAGCTTATCCTCAAGAGCCACGGCGCGTGCCGTGT
ATACTTGGCGCGATTGAGAGATGCCTTTTTCAAGGTCAATGCAGATGATC
GCGCTGCCGTTCAGGCAGCCCTCTTGTTGGCGGGAATGAGCCAAGAGGAG
GTCGACGCCAAAAAGGCTAAGGATTGGGCTTATTTTCTGAAACGATGCCG
AAGATGCAACGGCTCAGCAAGCTTATCCTCAAGAGCCACGGCGCGTGCCG
TGTATACTTGGCGCGATTGAGAGATGCCTTTTTCAAGGTCAATGCAGATG
ATCGCGCTGCCGTTCAGGCAGCCCTCTTGTTGGCGGGAATGAGCCAAGAG
GAGGTCGACGCCAAAAAGGCTAAGGATTGGGCTTATTTTCTGAAACGATG
CCGAAGGATGATCCCGCCTCTGGCAGAGTTGGCCAAGCGCTTCGACTTAG
TCAACAAGGTGCACGGTGGGCTCCTTGACAACAAGACGAAGCAGCCGCTG
CCTCGCCCAGAAGCACTGGAGTCCGCCAAGCGTCTCAGAGAACACATTGT
GGCAGATTGTTGTAGTGACGCCCCCAAGCAAGCGCTGTACTTCGAGGCTG
GGAGGGATCCGGAGACTCTGTGTGCGCTGTTCCGTTGTGTCCGAGGCACA
AACGACCTAGAGGGGTACCACTTCCACATGCGCTTATTGGTTGCATGGTG
TTTGTCACCCAGGCTTGCCCATCTCCTCCTTCTCGAGCACAACTACAGAT
GGATTTACGTCAGAGCATCAAGAACCGCGGAGTTACCGAGGTTGTCGGGG
GATTCTACGACCAGCCGATGCTCGAGGCCATTCAGGTATTTTTCCACATG
CCGTACAGATGATCCCGCCTCTGGCAGAGTTGGCCAAGCGCTTCGACTTA
GTCAACAAGGTGCACGGTGGGCTCCTTGACAACAAGACGAAGCAGCCGCT
GCCTCGCCCAGAAGCACTGGAGTCCGCCAAGCGTCTCAGAGAACACATTG
TGGCAGATTGTTGTAGTGACGCCCCCAAGCAAGCGCTGTACTTCGAGGCT
GGGAGGGATCCGGAGACTCTGTGTGCGCTGTTCCGTTGTGTCCGAGGCAC
AAACGACCTAGAGGGGTACCACTTCCACATGCGCTTATTGGTTGCATGGT
GTTTGTCACCCAGGCTTGCCCATCTCCTCCTTCTCGAGCACAACTACAGA
TGGATTTACGTCAGAGCATCAAGAACCGCGGAGTTACCGAGGTTGTCGGG
GGATTCTACGACCAGCCGATGCTCGAGGCCATTCAGGTATTTTTCCACAT
GCCGTACA
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