mRNA_H-canaliculatus_F_contig1353.2860.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1353.2860.1
Unique NamemRNA_H-canaliculatus_F_contig1353.2860.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1353.2860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1353contigH-canaliculatus_F_contig1353:5068..5640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size573
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1353.2860.1prot_H-canaliculatus_F_contig1353.2860.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1353 5158..5466 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929096.6174607-UTR-H-canaliculatus_F_contig1353:5067..51571622929096.6174607-UTR-H-canaliculatus_F_contig1353:5067..5157Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1353 5068..5157 +
1696845677.321842-UTR-H-canaliculatus_F_contig1353:5067..51571696845677.321842-UTR-H-canaliculatus_F_contig1353:5067..5157Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1353 5068..5157 +
1622929096.6455762-UTR-H-canaliculatus_F_contig1353:5466..56401622929096.6455762-UTR-H-canaliculatus_F_contig1353:5466..5640Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1353 5467..5640 +
1696845677.3404856-UTR-H-canaliculatus_F_contig1353:5466..56401696845677.3404856-UTR-H-canaliculatus_F_contig1353:5466..5640Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1353 5467..5640 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929096.6321955-CDS-H-canaliculatus_F_contig1353:5157..54661622929096.6321955-CDS-H-canaliculatus_F_contig1353:5157..5466Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1353 5158..5466 +
1696845677.3315363-CDS-H-canaliculatus_F_contig1353:5157..54661696845677.3315363-CDS-H-canaliculatus_F_contig1353:5157..5466Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1353 5158..5466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1353.2860.1

>prot_H-canaliculatus_F_contig1353.2860.1 ID=prot_H-canaliculatus_F_contig1353.2860.1|Name=mRNA_H-canaliculatus_F_contig1353.2860.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=103bp
MYSTDGRRRHEPAEFGGVTGWRSERQERCTTERHAKAIDSRLQQARIARN
SCLGTRENYDIRDSRMQEARRSGRMVEHKTGRNKYNLIDDTTQVCHLRVG
AW*
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mRNA from alignment at H-canaliculatus_F_contig1353:5068..5640+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1353.2860.1 ID=mRNA_H-canaliculatus_F_contig1353.2860.1|Name=mRNA_H-canaliculatus_F_contig1353.2860.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=573bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1353:5068..5640+ (Hapterophycus canaliculatus Oshoro5f female)
TTCGACGGTTCCCACCCTTCGCCGCTCATATGATACTGCAACGTGAACAC
TCGGGCTCCTTTCCTCCTCAGCCGAAACAGTAGATCCTGCATGTACTCGA
CAGACGGACGGCGACGCCACGAGCCCGCTGAGTTCGGAGGGGTTACTGGA
TGGCGGAGCGAAAGACAGGAGAGGTGTACCACCGAGCGACATGCAAAAGC
TATCGATTCTCGACTGCAACAAGCACGTATCGCAAGAAACTCCTGTCTGG
GTACACGTGAAAACTATGACATCAGAGATTCGCGCATGCAAGAGGCGAGA
AGGTCGGGCAGAATGGTTGAGCACAAGACAGGGAGGAACAAGTACAACCT
GATCGATGACACAACGCAGGTTTGCCACCTGCGAGTAGGAGCGTGGTGAG
CGTTCTTACCAACACCGTCTCGAAACTCCCTCTCATGCTGACCCAAGCAG
TCCTGTTCGCAGCAATGCAAGCATGACGAACCTTACCTCAAGTTGGACGA
GGAGCGTGGGGTAGGCGTACAAGAAAACCACAGTCGTCGCTGCCAGCCCT
AACTCGTCGAACAACTCGGGGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1353:5068..5640+

>mRNA_H-canaliculatus_F_contig1353.2860.1 ID=mRNA_H-canaliculatus_F_contig1353.2860.1|Name=mRNA_H-canaliculatus_F_contig1353.2860.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=618bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1353:5068..5640+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTACTCGACAGACGGACGGCGACGCCACGAGCCCGCTGAGTTCGGAGG
GGTTACTGGATGGCGGAGCGAAAGACAGGAGAGGTGTACCACCGAGCGAC
ATGCAAAAGCTATCGATTCTCGACTGCAACAAGCACGTATCGCAAGAAAC
TCCTGTCTGGGTACACGTGAAAACTATGACATCAGAGATTCGCGCATGCA
AGAGGCGAGAAGGTCGGGCAGAATGGTTGAGCACAAGACAGGGAGGAACA
AGTACAACCTGATCGATGACACAACGCAGGTTTGCCACCTGCGAGTAGGA
GCGTGGTGAATGTACTCGACAGACGGACGGCGACGCCACGAGCCCGCTGA
GTTCGGAGGGGTTACTGGATGGCGGAGCGAAAGACAGGAGAGGTGTACCA
CCGAGCGACATGCAAAAGCTATCGATTCTCGACTGCAACAAGCACGTATC
GCAAGAAACTCCTGTCTGGGTACACGTGAAAACTATGACATCAGAGATTC
GCGCATGCAAGAGGCGAGAAGGTCGGGCAGAATGGTTGAGCACAAGACAG
GGAGGAACAAGTACAACCTGATCGATGACACAACGCAGGTTTGCCACCTG
CGAGTAGGAGCGTGGTGA
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