mRNA_H-canaliculatus_F_contig13519.2855.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13519.2855.1
Unique NamemRNA_H-canaliculatus_F_contig13519.2855.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13519.2855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13519contigH-canaliculatus_F_contig13519:1201..2169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size969
Cds size648
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929096.0538807-UTR-H-canaliculatus_F_contig13519:1200..15211622929096.0538807-UTR-H-canaliculatus_F_contig13519:1200..1521Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13519 1201..1521 +
1696845677.0868506-UTR-H-canaliculatus_F_contig13519:1200..15211696845677.0868506-UTR-H-canaliculatus_F_contig13519:1200..1521Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13519 1201..1521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929096.0678895-CDS-H-canaliculatus_F_contig13519:1521..21691622929096.0678895-CDS-H-canaliculatus_F_contig13519:1521..2169Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13519 1522..2169 +
1696845677.1000955-CDS-H-canaliculatus_F_contig13519:1521..21691696845677.1000955-CDS-H-canaliculatus_F_contig13519:1521..2169Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13519 1522..2169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13519.2855.1prot_H-canaliculatus_F_contig13519.2855.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13519 1522..2169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13519.2855.1

>prot_H-canaliculatus_F_contig13519.2855.1 ID=prot_H-canaliculatus_F_contig13519.2855.1|Name=mRNA_H-canaliculatus_F_contig13519.2855.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=216bp
MLRTGDRDVATPVVVGEQLNPPKYGDSWSEEASRIFFAAFLDYEERVKFA
NAEGVVRRQVMSVSQLIPIFIQRCFAQHFYGRREVTTEELLSALRDHAGY
TTAAGNSVRERAAVEIRRVSKMQSGGGSVKDRVMHVSSALERYFCENPSV
DALYRASNGDYLPGPAESVSRAMVDGISPPSFQNYVRHELTYMEGWKKQP
NLVLRKMIDLAESTA*
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mRNA from alignment at H-canaliculatus_F_contig13519:1201..2169+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13519.2855.1 ID=mRNA_H-canaliculatus_F_contig13519.2855.1|Name=mRNA_H-canaliculatus_F_contig13519.2855.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=969bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13519:1201..2169+ (Hapterophycus canaliculatus Oshoro5f female)
CTCGTGGTCTGTTGATGATCACTCCGTTAATGAAGAAGGCTCTAAGGTGA
ACTTATCGAGCACGAGGCCAGCGATACTGGAGGAGTCCCTCGCAGATTGT
CCTCACATCCAGATCATCTGGCAGAGGCTACAATATCTAGATATTCTCGG
AACTCTGTTGGAGGAGTTTGGCGGAGGAAAGGGCCGGAGCTGATACAGCA
GTTCGGCCGCAGTCGGATCGAGACCAACTTCAAGCGCACAGCAGTGGAGG
ACGCTCCGTGGGCTGGAGGACGCACAAGTAAGGCAAGAGTCTCTCCGAAT
CTTGAGAAGGTCCTATAGGACATGTTGCGGACAGGAGACCGCGATGTGGC
GACACCCGTCGTCGTGGGCGAGCAGTTGAACCCGCCGAAATATGGCGATT
CGTGGAGCGAAGAGGCATCACGAATTTTTTTCGCCGCGTTTCTGGACTAC
GAAGAGCGTGTCAAGTTCGCGAACGCTGAGGGAGTTGTGCGACGCCAGGT
CATGAGCGTCAGTCAGTTAATACCCATCTTCATTCAGCGATGCTTCGCAC
AGCACTTCTATGGGCGCAGGGAAGTGACCACGGAGGAGTTACTTTCAGCT
TTGAGGGATCACGCAGGGTATACTACTGCTGCGGGGAACAGCGTGCGAGA
AAGGGCCGCTGTTGAAATTCGCCGCGTTTCAAAAATGCAGTCTGGAGGAG
GGAGCGTGAAAGATCGCGTGATGCATGTTAGCTCCGCGCTTGAACGCTAT
TTCTGCGAAAATCCCAGCGTTGACGCCTTGTACCGGGCCAGCAACGGTGA
TTATCTTCCTGGCCCGGCTGAGTCTGTTTCGCGTGCTATGGTCGACGGAA
TTTCGCCACCATCCTTTCAGAATTACGTACGCCATGAATTGACGTACATG
GAAGGTTGGAAAAAGCAGCCGAATCTCGTTTTGCGAAAAATGATTGATTT
GGCGGAGTCGACCGCGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13519:1201..2169+

>mRNA_H-canaliculatus_F_contig13519.2855.1 ID=mRNA_H-canaliculatus_F_contig13519.2855.1|Name=mRNA_H-canaliculatus_F_contig13519.2855.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1296bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13519:1201..2169+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTGCGGACAGGAGACCGCGATGTGGCGACACCCGTCGTCGTGGGCGA
GCAGTTGAACCCGCCGAAATATGGCGATTCGTGGAGCGAAGAGGCATCAC
GAATTTTTTTCGCCGCGTTTCTGGACTACGAAGAGCGTGTCAAGTTCGCG
AACGCTGAGGGAGTTGTGCGACGCCAGGTCATGAGCGTCAGTCAGTTAAT
ACCCATCTTCATTCAGCGATGCTTCGCACAGCACTTCTATGGGCGCAGGG
AAGTGACCACGGAGGAGTTACTTTCAGCTTTGAGGGATCACGCAGGGTAT
ACTACTGCTGCGGGGAACAGCGTGCGAGAAAGGGCCGCTGTTGAAATTCG
CCGCGTTTCAAAAATGCAGTCTGGAGGAGGGAGCGTGAAAGATCGCGTGA
TGCATGTTAGCTCCGCGCTTGAACGCTATTTCTGCGAAAATCCCAGCGTT
GACGCCTTGTACCGGGCCAGCAACGGTGATTATCTTCCTGGCCCGGCTGA
GTCTGTTTCGCGTGCTATGGTCGACGGAATTTCGCCACCATCCTTTCAGA
ATTACGTACGCCATGAATTGACGTACATGGAAGGTTGGAAAAAGCAGCCG
AATCTCGTTTTGCGAAAAATGATTGATTTGGCGGAGTCGACCGCGTGAAT
GTTGCGGACAGGAGACCGCGATGTGGCGACACCCGTCGTCGTGGGCGAGC
AGTTGAACCCGCCGAAATATGGCGATTCGTGGAGCGAAGAGGCATCACGA
ATTTTTTTCGCCGCGTTTCTGGACTACGAAGAGCGTGTCAAGTTCGCGAA
CGCTGAGGGAGTTGTGCGACGCCAGGTCATGAGCGTCAGTCAGTTAATAC
CCATCTTCATTCAGCGATGCTTCGCACAGCACTTCTATGGGCGCAGGGAA
GTGACCACGGAGGAGTTACTTTCAGCTTTGAGGGATCACGCAGGGTATAC
TACTGCTGCGGGGAACAGCGTGCGAGAAAGGGCCGCTGTTGAAATTCGCC
GCGTTTCAAAAATGCAGTCTGGAGGAGGGAGCGTGAAAGATCGCGTGATG
CATGTTAGCTCCGCGCTTGAACGCTATTTCTGCGAAAATCCCAGCGTTGA
CGCCTTGTACCGGGCCAGCAACGGTGATTATCTTCCTGGCCCGGCTGAGT
CTGTTTCGCGTGCTATGGTCGACGGAATTTCGCCACCATCCTTTCAGAAT
TACGTACGCCATGAATTGACGTACATGGAAGGTTGGAAAAAGCAGCCGAA
TCTCGTTTTGCGAAAAATGATTGATTTGGCGGAGTCGACCGCGTGA
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