mRNA_H-canaliculatus_F_contig13516.2852.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13516.2852.1
Unique NamemRNA_H-canaliculatus_F_contig13516.2852.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13516.2852.1 vs. uniprot
Match: D7FML5_ECTSI (Putative: similar to cytoplasmic dynein intermediate chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FML5_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 6.570e-18
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:   10 SPKHPALFVTANISGELGLWNLNHSMEEPFTPPVKVLHR 126
            SPKHPALFVTANISGELGLWNLNHSMEEPFTPPVKV+ R
Sbjct:  604 SPKHPALFVTANISGELGLWNLNHSMEEPFTPPVKVVDR 642
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BLAST of mRNA_H-canaliculatus_F_contig13516.2852.1 vs. uniprot
Match: A0A836C896_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C896_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.120e-8
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   10 SPKHPALFVTANISGELGLWNLNHSMEEPFTPPVKV 117
            SP HPALF TAN++G+L LWN+  S++ P TPP KV
Sbjct:  386 SPVHPALFATANVAGDLTLWNVTASLDTPVTPPCKV 421
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BLAST of mRNA_H-canaliculatus_F_contig13516.2852.1 vs. uniprot
Match: A0A7S1TZA0_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZA0_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 9.610e-5
Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 1 
Query:   10 SPKHPALFVTANISGELGLWNLNHSMEEP 96
            SP HPALF TAN  G++ +W+LN SMEEP
Sbjct:  620 SPDHPALFATANSVGQVDVWHLNRSMEEP 648
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13516.2852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FML5_ECTSI6.570e-1894.87Putative: similar to cytoplasmic dynein intermedia... [more]
A0A836C896_9STRA7.120e-861.11WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7S1TZA0_9STRA9.610e-565.52Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13516contigH-canaliculatus_F_contig13516:2704..2835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue2.6e-14
Seed eggNOG ortholog2880.D7FML5
KEGG koko:K10415
KEGG Pathwayko04145,ko04962,ko05132,map04145,map04962,map05132
GOsGO:0000003,GO:0000280,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005816,GO:0005856,GO:0005868,GO:0005875,GO:0005938,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007097,GO:0007127,GO:0008150,GO:0009987,GO:0010970,GO:0015630,GO:0016043,GO:0022402,GO:0022414,GO:0030286,GO:0030473,GO:0030705,GO:0030863,GO:0030981,GO:0030989,GO:0032781,GO:0032991,GO:0035974,GO:0043085,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043462,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045503,GO:0045504,GO:0046907,GO:0048285,GO:0050790,GO:0051179,GO:0051234,GO:0051321,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0061982,GO:0065007,GO:0065009,GO:0071840,GO:0071944,GO:0072384,GO:0099111,GO:0099568,GO:0140013,GO:1902494,GO:1903046,GO:2000574,GO:2000576,GO:2000580,GO:2000582
EggNOG free text desc.dynein heavy chain binding
EggNOG OGsKOG1587@1,KOG1587@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionputative: similar to cytoplasmic dynein intermediate chain
Ec32 orthologEc-23_000750.2
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929095.8900225-CDS-H-canaliculatus_F_contig13516:2703..28351622929095.8900225-CDS-H-canaliculatus_F_contig13516:2703..2835Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13516 2704..2835 -
1696845677.0493176-CDS-H-canaliculatus_F_contig13516:2703..28351696845677.0493176-CDS-H-canaliculatus_F_contig13516:2703..2835Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13516 2704..2835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13516.2852.1prot_H-canaliculatus_F_contig13516.2852.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13516 2704..2835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13516.2852.1

>prot_H-canaliculatus_F_contig13516.2852.1 ID=prot_H-canaliculatus_F_contig13516.2852.1|Name=mRNA_H-canaliculatus_F_contig13516.2852.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=44bp
SDRSPKHPALFVTANISGELGLWNLNHSMEEPFTPPVKVLHRK*
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mRNA from alignment at H-canaliculatus_F_contig13516:2704..2835-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13516.2852.1 ID=mRNA_H-canaliculatus_F_contig13516.2852.1|Name=mRNA_H-canaliculatus_F_contig13516.2852.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=132bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13516:2704..2835- (Hapterophycus canaliculatus Oshoro5f female)
TCTGACAGGTCTCCCAAGCACCCCGCTTTGTTCGTGACGGCGAACATCAG
CGGAGAGCTCGGGCTGTGGAACCTGAACCATAGCATGGAGGAGCCCTTCA
CCCCTCCAGTCAAGGTGCTGCACCGCAAGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13516:2704..2835-

>mRNA_H-canaliculatus_F_contig13516.2852.1 ID=mRNA_H-canaliculatus_F_contig13516.2852.1|Name=mRNA_H-canaliculatus_F_contig13516.2852.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=264bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13516:2704..2835- (Hapterophycus canaliculatus Oshoro5f female)
TCTGACAGGTCTCCCAAGCACCCCGCTTTGTTCGTGACGGCGAACATCAG
CGGAGAGCTCGGGCTGTGGAACCTGAACCATAGCATGGAGGAGCCCTTCA
CCCCTCCAGTCAAGGTGCTGCACCGCAAGTAGTCTGACAGGTCTCCCAAG
CACCCCGCTTTGTTCGTGACGGCGAACATCAGCGGAGAGCTCGGGCTGTG
GAACCTGAACCATAGCATGGAGGAGCCCTTCACCCCTCCAGTCAAGGTGC
TGCACCGCAAGTAG
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