prot_H-canaliculatus_F_contig13512.2850.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig13512.2850.1
Unique Nameprot_H-canaliculatus_F_contig13512.2850.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length226
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13512.2850.1 vs. uniprot
Match: D7FS94_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS94_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 9.700e-88
Identity = 157/236 (66.53%), Postives = 171/236 (72.46%), Query Frame = 0 
Query:    1 VGGLARGVDPKELAALIARTLPPG-ASPTAEIMRDATTGIERGFGYVTVPPGEGVKAGAERAIAAYNGSRWRGNKIRVGLAKGDYLQRLKAEWDAAAKAKAKAAEEALVAAGAKK---------PAVPYKARPCLRVRRRPGESRVILVDPTPIAWAKPPRQDPRAWKKNKEKEAXXXXXXXXXXXXXXXXXGKDSESGPHRRKRGVLGCRRRVEFPGREATCTTKCRELWRRHLQ 226
            VGGLARGVDP ELAALIARTLP G ASPTAEIMRDA+TGIERGFGYV++P GEGVKAGAERAIAAY+G+RW+G KIRVG AKGDYLQRLKAEWDAAA                           PAV YKARP LR+RRRPGE RV+LVDPTPIAWAKP R+DPR W K +E+                    +  + G HRRKRGVLG RRRVEFPGREATC+TKCRELWRRHLQ
Sbjct:   15 VGGLARGVDPNELAALIARTLPSGTASPTAEIMRDASTGIERGFGYVSIPGGEGVKAGAERAIAAYDGARWKGGKIRVGFAKGDYLQRLKAEWDAAAXXXXXXXXXXXXXXXXXXXXPSKTPVPPAVAYKARPFLRLRRRPGE-RVVLVDPTPIAWAKPSRKDPRTWNKREEEGGE-----------------EGGDGGTHRRKRGVLGARRRVEFPGREATCSTKCRELWRRHLQ 232
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13512.2850.1 vs. uniprot
Match: A0A6H5KVR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR0_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 2.040e-70
Identity = 140/200 (70.00%), Postives = 151/200 (75.50%), Query Frame = 0 
Query:   32 MRDATTGIERGFGYVTVPPGEGVKAGAERAIAAYNGSRWRGNKIRVGLAKGDYLQRLKAEWDAAAKAKAKAAEEALVAAG--AKKP---AVPYKARPCLRVRRRPGESRVILVDPTPIAWAKPPRQDPRAWKKNKEKEAXXXXXXXXXXXXXXXXXGKDSESGPHRRKRGVLGCRRRVEFPGREATCTTKCRELWRRHLQ 226
            MRDA+TGIERGFGYV++P GEGVKAGAERAIAAYNG+RW+G KIRVG AKGDYLQRLKAEWDAAAK            AG  +K P   AV YKARP LR+RRRPGE RV+LVDPTPIAWAKP R+DPRAW K +    XXXXXXXXXXXX                 RGVLG RRRVEFPGREATC+TKCRELWRRHLQ
Sbjct:    1 MRDASTGIERGFGYVSIPGGEGVKAGAERAIAAYNGARWKGGKIRVGFAKGDYLQRLKAEWDAAAKKXXXXXXXXXXXAGGPSKTPVPAAVAYKARPFLRLRRRPGE-RVVLVDPTPIAWAKPSRKDPRAWNKKEXXXXXXXXXXXXXXXX-----------------RGVLGGRRRVEFPGREATCSTKCRELWRRHLQ 182
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13512.2850.1 vs. uniprot
Match: A0A1Y1HXN5_KLENI (Protein with RRM/RBD/RNP motifs n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HXN5_KLENI)

HSP 1 Score: 61.6 bits (148), Expect = 2.240e-7
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 0 
Query:    1 VGGLARGVDPKELAALIARTLPPGASPTAEIM-RDATTGIERGFGYVTVPPGEGVKAGAERAIAAYNGSRWRGNKIRVGLAKGDYLQRLKAEW 92
            VGGL   V P+EL A   R  P G    +EI+ +    G  RGFGYV + P    +A   +  A YNG++WRG ++RV  A+  +L RLKAEW
Sbjct:   35 VGGLPADVTPEELQA---RFQPFGKVVGSEIVPQKEDAGTCRGFGYVDLEPVS--EASLSKCFAVYNGTKWRGGRLRVEKARASFLDRLKAEW 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13512.2850.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FS94_ECTSI9.700e-8866.53RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KVR0_9PHAE2.040e-7070.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y1HXN5_KLENI2.240e-743.01Protein with RRM/RBD/RNP motifs n=1 Tax=Klebsormid... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 85..105
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..86
e-value: 1.6E-9
score: 39.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..82
score: 10.616
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 1..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13512contigH-canaliculatus_F_contig13512:1006..3072 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13512.2850.1mRNA_H-canaliculatus_F_contig13512.2850.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig13512 1006..3072 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig13512.2850.1 ID=prot_H-canaliculatus_F_contig13512.2850.1|Name=mRNA_H-canaliculatus_F_contig13512.2850.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=226bp
VGGLARGVDPKELAALIARTLPPGASPTAEIMRDATTGIERGFGYVTVPP
GEGVKAGAERAIAAYNGSRWRGNKIRVGLAKGDYLQRLKAEWDAAAKAKA
KAAEEALVAAGAKKPAVPYKARPCLRVRRRPGESRVILVDPTPIAWAKPP
RQDPRAWKKNKEKEAEERRRGEEEAAKEEWGGGKDSESGPHRRKRGVLGC
RRRVEFPGREATCTTKCRELWRRHLQ
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf