mRNA_H-canaliculatus_F_contig13501.2842.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13501.2842.1
Unique NamemRNA_H-canaliculatus_F_contig13501.2842.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13501.2842.1 vs. uniprot
Match: D7G914_ECTSI (ER membrane protein complex subunit 10 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G914_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 1.550e-5
Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 2 
Query:    5 MKTCMITAVALLTWFAYGSARSVSVEHAFGSNSKFSHRGSAEIVVDPAGAVPPSATVQPVKLH 193
            MK+          W    SARS+SVEHAFG  ++++HRG  E+ +DP+ A   SA++QP  L 
Sbjct:    1 MKSLKTATSVAFAWCVQASARSLSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATLR 63
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13501.2842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G914_ECTSI1.550e-541.27ER membrane protein complex subunit 10 n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13501contigH-canaliculatus_F_contig13501:1181..1617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size201
Cds size195
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13501.2842.1prot_H-canaliculatus_F_contig13501.2842.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13501 1181..1613 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929092.094436-CDS-H-canaliculatus_F_contig13501:1180..12731622929092.094436-CDS-H-canaliculatus_F_contig13501:1180..1273Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13501 1181..1273 -
1696845676.5638125-CDS-H-canaliculatus_F_contig13501:1180..12731696845676.5638125-CDS-H-canaliculatus_F_contig13501:1180..1273Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13501 1181..1273 -
1622929092.107457-CDS-H-canaliculatus_F_contig13501:1511..16131622929092.107457-CDS-H-canaliculatus_F_contig13501:1511..1613Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13501 1512..1613 -
1696845676.5728683-CDS-H-canaliculatus_F_contig13501:1511..16131696845676.5728683-CDS-H-canaliculatus_F_contig13501:1511..1613Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13501 1512..1613 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929092.119608-UTR-H-canaliculatus_F_contig13501:1613..16171622929092.119608-UTR-H-canaliculatus_F_contig13501:1613..1617Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13501 1614..1617 -
1696845676.5834646-UTR-H-canaliculatus_F_contig13501:1613..16171696845676.5834646-UTR-H-canaliculatus_F_contig13501:1613..1617Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13501 1614..1617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13501.2842.1

>prot_H-canaliculatus_F_contig13501.2842.1 ID=prot_H-canaliculatus_F_contig13501.2842.1|Name=mRNA_H-canaliculatus_F_contig13501.2842.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=65bp
MKTCMITAVALLTWFAYGSARSVSVEHAFGSNSKFSHRGSAEIVVDPAGA
VPPSATVQPVKLHYS
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mRNA from alignment at H-canaliculatus_F_contig13501:1181..1617-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13501.2842.1 ID=mRNA_H-canaliculatus_F_contig13501.2842.1|Name=mRNA_H-canaliculatus_F_contig13501.2842.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=437bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13501:1181..1617- (Hapterophycus canaliculatus Oshoro5f female)
GAACATGAAGACCTGTATGATTACCGCAGTCGCTCTTCTCACGTGGTTCG
CTTATGGTAGTGCGCGCAGCGTCAGCGTGGAGCATGCCTTTGGTTCAAAT
TCAAAGGTAGGTTCGCGAAATGAGCATTTGTTTTCAAGTGTTCCGCTGAA
AAGCACTGTCAAAGCGAAGCCGAGCAAGACTTGACGGCAGAAACGAAGCA
GCGATAGTAGCGCCCAGAACAAGGGATCATATGTCCAGTAGAACGTACAT
CGTAGTGCTTTAGTAACCTGCCTCCTCTCCCGAAGGAACCAACCTAGCGC
TGACATTCGTGTCGATCGGCTTTTTATTAACACTTTACCGGCAGTTCTCT
CACCGAGGATCTGCGGAGATTGTAGTTGACCCTGCCGGGGCCGTGCCGCC
TTCTGCTACAGTCCAGCCCGTGAAGCTGCACTATTCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13501:1181..1617-

>mRNA_H-canaliculatus_F_contig13501.2842.1 ID=mRNA_H-canaliculatus_F_contig13501.2842.1|Name=mRNA_H-canaliculatus_F_contig13501.2842.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=390bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13501:1181..1617- (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGACCTGTATGATTACCGCAGTCGCTCTTCTCACGTGGTTCGCTTA
TGGTAGTGCGCGCAGCGTCAGCGTGGAGCATGCCTTTGGTTCAAATTCAA
AGATGAAGACCTGTATGATTACCGCAGTCGCTCTTCTCACGTGGTTCGCT
TATGGTAGTGCGCGCAGCGTCAGCGTGGAGCATGCCTTTGGTTCAAATTC
AAAGTTCTCTCACCGAGGATCTGCGGAGATTGTAGTTGACCCTGCCGGGG
CCGTGCCGCCTTCTGCTACAGTCCAGCCCGTGAAGCTGCACTATTCATTC
TCTCACCGAGGATCTGCGGAGATTGTAGTTGACCCTGCCGGGGCCGTGCC
GCCTTCTGCTACAGTCCAGCCCGTGAAGCTGCACTATTCA
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