mRNA_H-canaliculatus_F_contig1350.2839.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1350.2839.1 vs. uniprot
Match: D7FH38_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH38_ECTSI) HSP 1 Score: 483 bits (1243), Expect = 5.200e-147 Identity = 471/855 (55.09%), Postives = 514/855 (60.12%), Query Frame = 3
Query: 516 SPNRNALNGMGEFILTQVRRGASEQQWADWLKVPFEHACVARDMSTIRRLLEAGVNGPYDRPRDPRFRRHTLLHLSSACGNTE----VVNTLLR--WGSGPDVACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADKDARTGGSGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQAAFFGQMGAVRELLESLANPNAQDAEGCTPVFLAAQEGHEEVVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRADLDAVTGDHGSTALHVAAISGFDEVLTVLLDVGSDLERADAGGWTPLHCACAAARASCVNALIARGADPAAVTPEGQRPASLIGTDLAEGEETNTETNETIWKMLRVPRAESEARRRRHTAKHAGSLRPPPPYNDRPPPAYGPDSIGGVVPFDSTGSGSATXXXXXXXXXXGSRQLHRSPTVRTQGASGAGKDGHRGGPTPSPNGNSHRDVNGGS-PGVRPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGQGEGGDVVGELGGYDPATEEPSS-----RDKRFSTGGVACGVAS-RPISKSSAS--MATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPRRGRSPSALPDNXXXXXXXXXXXRPVRHSG--GEGGDSSDGDVSMEVASSEGDXXXXXXXXXXXXXXXXXXXXXXXXXEVPRILRRPG-----------------ARGAAXXXXXXA------ARPSIEHDGRRSSAGRASGGAA-FHSNTAQTE-----KXXXXXXXXXXXXYDVGASEGLVANRIAAYDPFSYSQKDAQKS 2942
+P+RNALNGMGEFILTQVRRGASEQQWADWLKVPFEHAC+ARDMSTIRRLLEAGVNGPYDRPRDPRFRRHTLLHLSSACGNTE L R G +VA GADKDARTGGSGA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ESLA+PNAQDAE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EGRAD +AVT DHGST LHVAAISGFDEVLTVLLDVG D+E AD+GGWTPLHCACAAARASCVN LI RGADP+A+TPEG+R ASLIGTDLAEG+E N+ETNETIWKMLRVPRAESEARRRR TAK+AG+ RPPPPYND AYGPDS+GG+V FDS GSGSATXXXXXXXXXXGSRQLHRSPT + +G+G G R G P+ N HRD NGG P R A XXXXXXXXXXXX XXXXXXX GY P ++ S RDKR ST V GVA+ RP +S A+ + +P +G XXXXXXXXXXX R + GE + DGDV ME+ S+ G E+PRILRRP ARGA+ RPSI DGRRSSAGRASGGA F+S+ A + + +GA+EG+VA+RIAAYDPFSYSQKDAQ S
Sbjct: 36 TPDRNALNGMGEFILTQVRRGASEQQWADWLKVPFEHACLARDMSTIRRLLEAGVNGPYDRPRDPRFRRHTLLHLSSACGNTEPSEKAYTPLHRAVLGGHSEVA------------------------RVLIKAGADKDARTGGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ESLADPNAQDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGRADYEAVTEDHGSTPLHVAAISGFDEVLTVLLDVGCDVESADSGGWTPLHCACAAARASCVNTLIMRGADPSAITPEGKRAASLIGTDLAEGDEPNSETNETIWKMLRVPRAESEARRRRRTAKNAGNQRPPPPYNDXXXXAYGPDSVGGIVVFDSAGSGSATXXXXXXXXXXGSRQLHRSPTHPQEAPAGSGGKGSRRGAAPT---NGHRDANGGGIPRERSATRRGDQQHQXXXXXXXXXXXXEFAEGQYAGKEGDLEGDTTGVVDPAAVGXXXXXXX--------XXXXXSGYKPTPDQYQSQPRPSRDKRVSTDVVVGGVAAGRPAGRSPAAGGVGVAGETRGAERSPPPTGKAGSQGERGVSFSLSPPAGGRGGSNPPQGSRKXXXXXXXXXXXXXXXXXPADRRAAAMGEKHEDEDGDVEMELESAVG------VGGEAQGRRNDNAAVGQESAELPRILRRPAGAAAAAADRTTIDGARDARGASAASTGSGRIGGAGGRPSIATDGRRSSAGRASGGAGVFNSDEAGEDGRSSGSTAFGERPGGGGGFSMGAAEGIVASRIAAYDPFSYSQKDAQSS 848
BLAST of mRNA_H-canaliculatus_F_contig1350.2839.1 vs. uniprot
Match: A0A6H5KNQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ1_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 7.250e-10 Identity = 85/341 (24.93%), Postives = 122/341 (35.78%), Query Frame = 3
Query: 519 PNRNALNGMGEFILTQVRRGASEQQWADWLKVPFEHACVARDMSTIRRLLEAGVN-GPYDRPRDPRFRRHTLLHLSSACGNTEVVNTLLRWGSGPDVACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADKDARTGGSGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQAAFFGQMGAVRELLESLANPNAQDAEGC------TPVFLAAQEGHEEVVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRADLDAVTGDHGSTALHVAAISG--FDEVLTVLLDVGSDLERADAGGWTPLHCACAAARASCVNALIARGA 1514
P R +L+G+G + V GAS +QWA+WL+VP EHA + + + RLL+AG + G R R TLL ++ GN +V++ L+R G+G DV GAD + R + S QA V +L A PN +D G T LA + GH +V G D+DA G TALH A + + +L++ G++ E + GGWTPLH A R +C+ AL+ A
Sbjct: 5 PERTSLDGLGSEVFKLVSYGASREQWAEWLRVPLEHAASRGNPNLVERLLQAGADAGAGWRG----CRGRTLLDAAALGGNADVMSALIRGGAGADVN-KVTVSSRRSALHTATCCGHEAAAKRLVLTGADVNFRDPVAKCSVL-----------------------------------SQAIQGSHTQLVNDLPIGGARPNIRDDCGLGKTTYVTTFMLAVRRGHLAIVETLLEAGADCSLRQWADYSPLDVAAEHRALPILEAILGRG-VDVDAQD-RAGCTALHTAVLFSDRAGPAVHMLIEAGANTELKNGGGWTPLHAAAVHHRVNCMAALLQNNA 303
BLAST of mRNA_H-canaliculatus_F_contig1350.2839.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 6.300e-7 Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 3
Query: 525 RNALNGMGEFILTQVRRGASEQQWADWLKVPFEHACVARDMSTIRRLLEAGVNGPYDRPRDPRFRR---HTLLHLSSACGNTEVVNTLLRWGSGPD 803
R+ L G I V +GA+ +QWA+WL+VP EHA + ++ + +LL+AG +G + +R TLL + + GN V++ LL+ G GPD
Sbjct: 7 RSLLKGQEVEIFKLVSKGATPEQWAEWLRVPLEHAAASGNLDLVNKLLKAGADG------EAGWRGCGDRTLLDAALSGGNAGVMSALLQAGCGPD 96 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1350.2839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1350.2839.1 >prot_H-canaliculatus_F_contig1350.2839.1 ID=prot_H-canaliculatus_F_contig1350.2839.1|Name=mRNA_H-canaliculatus_F_contig1350.2839.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=859bp MDPMDKPGGATAAHGSGSGGSGGSHRGGGGGTLMSLPSPNRNALNGMGEFback to top mRNA from alignment at H-canaliculatus_F_contig1350:206..16796+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1350.2839.1 ID=mRNA_H-canaliculatus_F_contig1350.2839.1|Name=mRNA_H-canaliculatus_F_contig1350.2839.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=16591bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1350:206..16796+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1350:206..16796+ >mRNA_H-canaliculatus_F_contig1350.2839.1 ID=mRNA_H-canaliculatus_F_contig1350.2839.1|Name=mRNA_H-canaliculatus_F_contig1350.2839.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=5154bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1350:206..16796+ (Hapterophycus canaliculatus Oshoro5f female)back to top |