mRNA_H-canaliculatus_F_contig135.2836.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig135.2836.1
Unique NamemRNA_H-canaliculatus_F_contig135.2836.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig135.2836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig135contigH-canaliculatus_F_contig135:42962..43424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size463
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig135.2836.1prot_H-canaliculatus_F_contig135.2836.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig135 43022..43342 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929090.028703-UTR-H-canaliculatus_F_contig135:42961..430211622929090.028703-UTR-H-canaliculatus_F_contig135:42961..43021Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig135 42962..43021 +
1696845675.5569713-UTR-H-canaliculatus_F_contig135:42961..430211696845675.5569713-UTR-H-canaliculatus_F_contig135:42961..43021Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig135 42962..43021 +
1622929090.0604458-UTR-H-canaliculatus_F_contig135:43342..434241622929090.0604458-UTR-H-canaliculatus_F_contig135:43342..43424Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig135 43343..43424 +
1696845675.5804162-UTR-H-canaliculatus_F_contig135:43342..434241696845675.5804162-UTR-H-canaliculatus_F_contig135:43342..43424Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig135 43343..43424 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929090.0465825-CDS-H-canaliculatus_F_contig135:43021..433421622929090.0465825-CDS-H-canaliculatus_F_contig135:43021..43342Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig135 43022..43342 +
1696845675.5691793-CDS-H-canaliculatus_F_contig135:43021..433421696845675.5691793-CDS-H-canaliculatus_F_contig135:43021..43342Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig135 43022..43342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig135.2836.1

>prot_H-canaliculatus_F_contig135.2836.1 ID=prot_H-canaliculatus_F_contig135.2836.1|Name=mRNA_H-canaliculatus_F_contig135.2836.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=107bp
MPMDGTNVLILQQFDPFWMSWGREQQADTEGGQQHLHQLVRRREAQQTMA
RDKRVNDASSFWMATMTHSIAYFIQLWLYGYLYVTFYASFPRDSSAGDMQ
RHASNT*
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mRNA from alignment at H-canaliculatus_F_contig135:42962..43424+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig135.2836.1 ID=mRNA_H-canaliculatus_F_contig135.2836.1|Name=mRNA_H-canaliculatus_F_contig135.2836.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=463bp|location=Sequence derived from alignment at H-canaliculatus_F_contig135:42962..43424+ (Hapterophycus canaliculatus Oshoro5f female)
TCTTCATGCTCTCCGTGTACAAAAGAACGGGACCTCTGCCGCCATGCCGC
CATATGCGACATGCCAATGGATGGGACAAATGTGCTGATTTTGCAGCAAT
TTGATCCGTTTTGGATGTCTTGGGGGAGAGAGCAGCAAGCGGACACTGAA
GGGGGACAGCAGCACTTGCACCAACTTGTTCGACGTCGTGAAGCGCAACA
AACCATGGCAAGGGACAAGCGAGTCAATGATGCTTCCTCTTTCTGGATGG
CAACAATGACTCACTCAATAGCATATTTCATTCAGCTATGGTTATATGGT
TACCTCTACGTCACGTTTTATGCGAGTTTCCCCCGGGATTCGTCGGCGGG
GGACATGCAGAGACACGCTTCCAACACTTGAATGTACTTCGTCTGATAAA
AGAAAAACCGAAGTTACACGTGGAAGAACAACCAACTTGAGTCATACGAA
ATCTTCACTCATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig135:42962..43424+

>mRNA_H-canaliculatus_F_contig135.2836.1 ID=mRNA_H-canaliculatus_F_contig135.2836.1|Name=mRNA_H-canaliculatus_F_contig135.2836.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=642bp|location=Sequence derived from alignment at H-canaliculatus_F_contig135:42962..43424+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCAATGGATGGGACAAATGTGCTGATTTTGCAGCAATTTGATCCGTT
TTGGATGTCTTGGGGGAGAGAGCAGCAAGCGGACACTGAAGGGGGACAGC
AGCACTTGCACCAACTTGTTCGACGTCGTGAAGCGCAACAAACCATGGCA
AGGGACAAGCGAGTCAATGATGCTTCCTCTTTCTGGATGGCAACAATGAC
TCACTCAATAGCATATTTCATTCAGCTATGGTTATATGGTTACCTCTACG
TCACGTTTTATGCGAGTTTCCCCCGGGATTCGTCGGCGGGGGACATGCAG
AGACACGCTTCCAACACTTGAATGCCAATGGATGGGACAAATGTGCTGAT
TTTGCAGCAATTTGATCCGTTTTGGATGTCTTGGGGGAGAGAGCAGCAAG
CGGACACTGAAGGGGGACAGCAGCACTTGCACCAACTTGTTCGACGTCGT
GAAGCGCAACAAACCATGGCAAGGGACAAGCGAGTCAATGATGCTTCCTC
TTTCTGGATGGCAACAATGACTCACTCAATAGCATATTTCATTCAGCTAT
GGTTATATGGTTACCTCTACGTCACGTTTTATGCGAGTTTCCCCCGGGAT
TCGTCGGCGGGGGACATGCAGAGACACGCTTCCAACACTTGA
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