mRNA_H-canaliculatus_F_contig13477.2822.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig13477.2822.1 vs. uniprot
Match: D7G7C0_ECTSI (Conserved oligomeric Golgi complex subunit 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7C0_ECTSI) HSP 1 Score: 183 bits (465), Expect = 5.280e-51 Identity = 115/190 (60.53%), Postives = 119/190 (62.63%), Query Frame = 1
Query: 7 PRVGES--------SGDILSLWLLRRVTAFVEQLRGVLPLVEDGGLLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAAAGQWATASTEFVATLRDIAGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------RSLMAFPPVARLLNLVLTSFNQLR 489
PRVGE SGDILSLWLLRRV+AFVEQL+G+LPLVEDGGLLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAAA QWATAS EFV TLRD+A A XXX RSLMAFPPVARLLNLVLTSFNQLR
Sbjct: 362 PRVGEGLTTGSGRDSGDILSLWLLRRVSAFVEQLKGLLPLVEDGGLLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAAAAQWATASAEFVVTLRDVAAIEAAGGNGASLLHVPDRSTITTSRGGPANGHGTSGAGAXXXXXXXXXRAALYGGDGGIPPPPRSLMAFPPVARLLNLVLTSFNQLR 551
BLAST of mRNA_H-canaliculatus_F_contig13477.2822.1 vs. uniprot
Match: A0A836CL87_9STRA (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL87_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 2.380e-19 Identity = 51/96 (53.12%), Postives = 58/96 (60.42%), Query Frame = 1
Query: 16 GESSGDILSLWLLRRVTAFVEQLRGVLPLVEDGGLLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAAAGQWATASTEFVATLRDIAGATA 303
G L+ WL RRV AF LR LPLVED +RSLLE+CM F ASMGRLG DFRGLLVP FE V QW +A+ F L +A A+A
Sbjct: 266 GADGDAALASWLARRVGAFAALLRAALPLVEDAASVRSLLEQCMSFAASMGRLGADFRGLLVPAFEAAVWNGVTAQWRSATRAFQEGLARLAKASA 361
BLAST of mRNA_H-canaliculatus_F_contig13477.2822.1 vs. uniprot
Match: A0A7S2V501_9STRA (Conserved oligomeric Golgi complex subunit 8 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V501_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 3.580e-17 Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 34 ILSLWLLRRVTAFVEQLRGVLPLVEDGGLLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAAAGQWATASTEFVATLRD 285
+L++WL RR+ F+ L VLPLVEDG L +LLE+ MFFGASMGR+G DFRGL+ P+F + + +W AS + A +RD
Sbjct: 325 LLAMWLSRRLGRFLNLLELVLPLVEDGASLHNLLEQTMFFGASMGRVGADFRGLIGPIFVKTIERFCKDRWGVASAQLCARIRD 408
BLAST of mRNA_H-canaliculatus_F_contig13477.2822.1 vs. uniprot
Match: A0A0D2VME3_CAPO3 (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VME3_CAPO3) HSP 1 Score: 82.0 bits (201), Expect = 3.810e-15 Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = 1
Query: 28 GDILSLWLLRRVTAFVEQLRGVLPLVEDGGLLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAAAGQWATASTEFVATLRDIAGATA 303
G +L W++ RV +FV L L V DG + SLL +CM+FG S+GR+G DFR LLVP+FE R AGQ ATA+ +F T+ + A A
Sbjct: 377 GRLLLGWVVERVASFVATLEANLAAVSDGATVASLLGQCMYFGMSLGRVGIDFRTLLVPLFEHRALELFAGQVATATAKFAETMSSCSAAVA 468
BLAST of mRNA_H-canaliculatus_F_contig13477.2822.1 vs. uniprot
Match: W7TN52_9STRA (Conserved oligomeric Golgi complex subunit 8 n=5 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN52_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 9.700e-13 Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 1
Query: 16 GESSGDILSLWLLRRVTAFVEQLRGVLPLVEDGGLLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAAAGQWATASTEFVATL 279
G +LS WLLRR+ F+ +L L V +G +L ++E+C+FF ASMGR+G DFR L PVF + + A W+ + E A L
Sbjct: 341 GAGGSKVLSAWLLRRLALFLGELEDKLAHVTEGAVLADVMEQCLFFAASMGRIGGDFRASLGPVFSQAILAMADAHWSASRVELEALL 428
BLAST of mRNA_H-canaliculatus_F_contig13477.2822.1 vs. uniprot
Match: I0YMJ8_COCSC (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YMJ8_COCSC) HSP 1 Score: 74.3 bits (181), Expect = 1.850e-12 Identity = 39/86 (45.35%), Postives = 52/86 (60.47%), Query Frame = 1
Query: 22 SSGDILSLWLLRRVTAFVEQLRGVLPLVEDGGLLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAAAGQWATASTEFVATL 279
S G + W R+ ++E L GVLP + +GG L S+LE CM+ G S+GR+G DFRGLLVP+FE +V A A+ FV L
Sbjct: 229 SDGGAVYSWAQHRLVFYLETLTGVLPRIGEGGSLASVLEHCMYCGMSLGRVGLDFRGLLVPLFEAQVLRLYANSVKAATDMFVMLL 314
BLAST of mRNA_H-canaliculatus_F_contig13477.2822.1 vs. uniprot
Match: A0A8J9WPE3_9CHLO (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WPE3_9CHLO) HSP 1 Score: 72.8 bits (177), Expect = 5.940e-12 Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 1
Query: 28 GDILSLWLLRRVTAFVEQLRGVLPLVEDGGLLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAAAGQWATASTEFVATL 279
G + W R+ ++E L GVLP + +GG L S+LE CM+ G S+GR+G DFRGLLVP+FE +V A A+ FV L
Sbjct: 287 GGAVYSWAQHRLVFYLETLAGVLPRIGEGGSLASVLEHCMYCGMSLGRVGLDFRGLLVPLFEAQVLRLYANSVKAATDMFVMLL 370
BLAST of mRNA_H-canaliculatus_F_contig13477.2822.1 vs. uniprot
Match: A0A5B8MFV4_9CHLO (Conserved oligomeric Golgi complex subunit 8 n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MFV4_9CHLO) HSP 1 Score: 69.7 bits (169), Expect = 6.780e-11 Identity = 31/64 (48.44%), Postives = 45/64 (70.31%), Query Frame = 1
Query: 31 DILSLWLLRRVTAFVEQLRGVLPLVEDGGLLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERV 222
D+L +W RRV ++++ L LP + +G L S+LE CM+ G S+GR+G DFR LLVP+F+E V
Sbjct: 303 DLLHVWSARRVDSYLKLLAKSLPFIHEGANLSSVLEHCMYCGLSLGRIGLDFRCLLVPIFQEAV 366
BLAST of mRNA_H-canaliculatus_F_contig13477.2822.1 vs. uniprot
Match: A0A2P6NEC1_9EUKA (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NEC1_9EUKA) HSP 1 Score: 69.3 bits (168), Expect = 9.610e-11 Identity = 29/67 (43.28%), Postives = 50/67 (74.63%), Query Frame = 1
Query: 22 SSGDILSLWLLRRVTAFVEQLRGVLPLVEDGGLLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERV 222
+ G +LS W+ + V+ F++ L+ + + DG + +LL++CM++G+S+G+LG DFRGLLVP+FE+ V
Sbjct: 290 NDGGLLSSWVGQSVSDFIQLLKNHMRNINDGRSISNLLDQCMWYGSSLGKLGVDFRGLLVPIFEDIV 356
BLAST of mRNA_H-canaliculatus_F_contig13477.2822.1 vs. uniprot
Match: A0A2P6U0L2_CHLSO (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U0L2_CHLSO) HSP 1 Score: 68.2 bits (165), Expect = 2.390e-10 Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1
Query: 28 GDILSLWLLRRVTAFVEQLRGVLPLVEDGGLLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERV 222
G IL W RR+ A++E +R LP V +GG L S+L+ M+ GAS+GR+G DFR LL P+FE V
Sbjct: 287 GGILYAWAERRIAAYLEAMRLHLPRVSEGGSLASVLDHTMYCGASLGRVGLDFRPLLAPLFESAV 351 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13477.2822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig13477.2822.1 >prot_H-canaliculatus_F_contig13477.2822.1 ID=prot_H-canaliculatus_F_contig13477.2822.1|Name=mRNA_H-canaliculatus_F_contig13477.2822.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=163bp MPPRVGESSGDILSLWLLRRVTAFVEQLRGVLPLVEDGGLLRSLLEECMFback to top mRNA from alignment at H-canaliculatus_F_contig13477:314..1974- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig13477.2822.1 ID=mRNA_H-canaliculatus_F_contig13477.2822.1|Name=mRNA_H-canaliculatus_F_contig13477.2822.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1661bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13477:314..1974- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13477:314..1974- >mRNA_H-canaliculatus_F_contig13477.2822.1 ID=mRNA_H-canaliculatus_F_contig13477.2822.1|Name=mRNA_H-canaliculatus_F_contig13477.2822.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=978bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13477:314..1974- (Hapterophycus canaliculatus Oshoro5f female)back to top |