mRNA_H-canaliculatus_F_contig13476.2821.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13476.2821.1
Unique NamemRNA_H-canaliculatus_F_contig13476.2821.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13476.2821.1 vs. uniprot
Match: D7FUE1_ECTSI (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE1_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.100e-24
Identity = 70/141 (49.65%), Postives = 76/141 (53.90%), Query Frame = 3 
Query:    3 SFCMAYFFGFFGISLLDTHTMERTPSSVGLSHLQGAY---------------AKSGGSYGTMCSTETPQVAYSSCSSSNNGINGSKAFHGAPASPP-------PALGPVPEGDEYSSMKDEEVVACVENGKLKDHQLEKKL 359
            S CMAYFFGFFGIS LDT  MER+PSS GLSHL                   AK   S GTMC  ETPQ+A S                              PALGPVP+G++YS+M DEEV ACV  GKLKDHQLEKKL
Sbjct:  113 SVCMAYFFGFFGISFLDTSAMERSPSSFGLSHLDTHLYASERKRAVQFAEPPAKGSASNGTMCGKETPQLASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPALGPVPDGEDYSTMTDEEVAACVVTGKLKDHQLEKKL 253
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BLAST of mRNA_H-canaliculatus_F_contig13476.2821.1 vs. uniprot
Match: A0A7S3GVF0_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVF0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.070e-7
Identity = 48/142 (33.80%), Postives = 66/142 (46.48%), Query Frame = 3 
Query:    3 SFCMAYFFGFFGISLLDTHTMERTPSSVGLSHL---------------QGAYAKSGGSYGTMCSTETPQVAYSSCSSSNNGINGSKAFHGAPASPP------PALGPVPEGDE--YSSMKDEEVVACVENGKLKDHQLEKKL 359
            S C+AYFFGFFGIS +DT  +  +PS+ GL H                Q   AK+   +G++    T     S   +   G N     H A +  P      PA  P    D+  ++ + DEEV+  +  G LKD+QLEKKL
Sbjct:   70 SCCLAYFFGFFGISFVDTKVLSESPSTYGLQHFPQPGESESEEEEPANQETKAKTNAPFGSLYVAPTHNT-LSQNFTPGAGFNAPATSHTARSDGPICSDKRPATTPAVSADDIDFTVLADEEVLGHLITGTLKDYQLEKKL 210
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BLAST of mRNA_H-canaliculatus_F_contig13476.2821.1 vs. uniprot
Match: A0A835YX65_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX65_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.260e-5
Identity = 22/38 (57.89%), Postives = 27/38 (71.05%), Query Frame = 3 
Query:    9 CMAYFFGFFGISLLDTHTMERTPSSVGLSHLQGAYAKS 122
            C+AYFFGFFG+S LD   M+R+PS+ GL HL    A S
Sbjct:   80 CLAYFFGFFGVSFLDKEAMQRSPSTFGLGHLDAGLAPS 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13476.2821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUE1_ECTSI1.100e-2449.65Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
A0A7S3GVF0_9STRA1.070e-733.803-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A835YX65_9STRA5.260e-557.893-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13476contigH-canaliculatus_F_contig13476:1875..2723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.3e-20
Seed eggNOG ortholog2880.D7FUE1
Preferred nameHMGR
KEGG rclassRC00004,RC00644
KEGG koko:K00021
KEGG ReactionR02082
KEGG Pathwayko00900,ko01100,ko01110,ko01130,ko04152,ko04976,map00900,map01100,map01110,map01130,map04152,map04976
KEGG ModuleM00095
EggNOG free text desc.hydroxymethylglutaryl-CoA reductase (NADPH) activity
EggNOG OGsCOG1257@1,KOG2480@2759
EC1.1.1.34
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size360
Cds size348
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13476.2821.1prot_H-canaliculatus_F_contig13476.2821.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13476 1875..2712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929087.647621-CDS-H-canaliculatus_F_contig13476:1874..19311622929087.647621-CDS-H-canaliculatus_F_contig13476:1874..1931Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13476 1875..1931 -
1696845674.8006275-CDS-H-canaliculatus_F_contig13476:1874..19311696845674.8006275-CDS-H-canaliculatus_F_contig13476:1874..1931Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13476 1875..1931 -
1622929087.6693273-CDS-H-canaliculatus_F_contig13476:2211..23901622929087.6693273-CDS-H-canaliculatus_F_contig13476:2211..2390Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13476 2212..2390 -
1696845674.8261576-CDS-H-canaliculatus_F_contig13476:2211..23901696845674.8261576-CDS-H-canaliculatus_F_contig13476:2211..2390Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13476 2212..2390 -
1622929087.6864576-CDS-H-canaliculatus_F_contig13476:2600..27121622929087.6864576-CDS-H-canaliculatus_F_contig13476:2600..2712Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13476 2601..2712 -
1696845674.8403792-CDS-H-canaliculatus_F_contig13476:2600..27121696845674.8403792-CDS-H-canaliculatus_F_contig13476:2600..2712Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13476 2601..2712 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929087.704259-UTR-H-canaliculatus_F_contig13476:2712..27231622929087.704259-UTR-H-canaliculatus_F_contig13476:2712..2723Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13476 2713..2723 -
1696845674.8529208-UTR-H-canaliculatus_F_contig13476:2712..27231696845674.8529208-UTR-H-canaliculatus_F_contig13476:2712..2723Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13476 2713..2723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13476.2821.1

>prot_H-canaliculatus_F_contig13476.2821.1 ID=prot_H-canaliculatus_F_contig13476.2821.1|Name=mRNA_H-canaliculatus_F_contig13476.2821.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=116bp
MAYFFGFFGISLLDTHTMERTPSSVGLSHLQGAYAKSGGSYGTMCSTETP
QVAYSSCSSSNNGINGSKAFHGAPASPPPALGPVPEGDEYSSMKDEEVVA
CVENGKLKDHQLEKKL
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mRNA from alignment at H-canaliculatus_F_contig13476:1875..2723-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13476.2821.1 ID=mRNA_H-canaliculatus_F_contig13476.2821.1|Name=mRNA_H-canaliculatus_F_contig13476.2821.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=849bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13476:1875..2723- (Hapterophycus canaliculatus Oshoro5f female)
GGTCTTTCTGCATGGCGTACTTCTTCGGCTTTTTCGGCATTTCTCTCCTC
GACACCCACACCATGGAGCGCACCCCATCCTCCGTGGGCCTCTCGCACCT
TCAGGGGGCTTATGCCAAGAGCGGTGAGACGCTTGTTGTAGCTAAGCGTA
TTGAGAGTGTGGGTTGGAAAAAGTGCGTTCACCCGCGTCGTCAAAGCAGC
TTCTCTAAGCCATGTCTCGCGACCGTGCATCTCGCGACCGCACAGCAGTG
GACACACACGCAAAGGCATACGTCGGCCTTTTTATCTGACGCCTCTGCAC
GTCGTCACACCTGTTGCTCGTGTGTGCCTACAGGCGGTTCGTACGGCACC
ATGTGCTCCACGGAGACGCCCCAGGTTGCCTACTCCTCTTGCAGCAGCAG
CAACAACGGAATCAACGGCAGCAAAGCATTTCACGGAGCCCCCGCATCGC
CCCCGCCGGCGCTGGGACCGGTCCCGGAGGGAGACGAGTACTCGAGCATG
AAGGACGAAGAGGTGCGAGTCGGATGTTGGGATGAAAGATCTATATTGTC
GGAGAGGGGGGCCGTCTGAAGTGCCGTAGGGTCATACGTCGTGCTTCGGA
TTGTCTTGAATGGTGCTCTCGTTTCTGGCATGACGGTATCATCTCATCCC
AAACTTTGGTTATGGCAGAACTTCCGAACACCAGCGGTTGCCCCGGAAAA
TGCAAGCGTACGGGTTGACGGACGTTTGCCCCAATGACCTGAGGGCGGCC
AAATTGCATGGCTCACGTAGCTTTCCGTTGCTTTCGTTCCAGGTGGTGGC
GTGTGTTGAAAACGGCAAGCTGAAGGACCACCAGCTGGAGAAGAAGCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13476:1875..2723-

>mRNA_H-canaliculatus_F_contig13476.2821.1 ID=mRNA_H-canaliculatus_F_contig13476.2821.1|Name=mRNA_H-canaliculatus_F_contig13476.2821.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=696bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13476:1875..2723- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGTACTTCTTCGGCTTTTTCGGCATTTCTCTCCTCGACACCCACAC
CATGGAGCGCACCCCATCCTCCGTGGGCCTCTCGCACCTTCAGGGGGCTT
ATGCCAAGAGCGATGGCGTACTTCTTCGGCTTTTTCGGCATTTCTCTCCT
CGACACCCACACCATGGAGCGCACCCCATCCTCCGTGGGCCTCTCGCACC
TTCAGGGGGCTTATGCCAAGAGCGGCGGTTCGTACGGCACCATGTGCTCC
ACGGAGACGCCCCAGGTTGCCTACTCCTCTTGCAGCAGCAGCAACAACGG
AATCAACGGCAGCAAAGCATTTCACGGAGCCCCCGCATCGCCCCCGCCGG
CGCTGGGACCGGTCCCGGAGGGAGACGAGTACTCGAGCATGAAGGACGAA
GAGGCGGTTCGTACGGCACCATGTGCTCCACGGAGACGCCCCAGGTTGCC
TACTCCTCTTGCAGCAGCAGCAACAACGGAATCAACGGCAGCAAAGCATT
TCACGGAGCCCCCGCATCGCCCCCGCCGGCGCTGGGACCGGTCCCGGAGG
GAGACGAGTACTCGAGCATGAAGGACGAAGAGGTGGTGGCGTGTGTTGAA
AACGGCAAGCTGAAGGACCACCAGCTGGAGAAGAAGCTCGTGGTGGCGTG
TGTTGAAAACGGCAAGCTGAAGGACCACCAGCTGGAGAAGAAGCTC
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