mRNA_H-canaliculatus_F_contig13461.2814.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13461.2814.1
Unique NamemRNA_H-canaliculatus_F_contig13461.2814.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13461.2814.1 vs. uniprot
Match: A0A2K3LCP3_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LCP3_TRIPR)

HSP 1 Score: 56.6 bits (135), Expect = 9.380e-6
Identity = 36/108 (33.33%), Postives = 59/108 (54.63%), Query Frame = 1 
Query: 1777 SECWIFDSGASGHVTPNADHLTNFRQCQRF-LRVASGSLLPIEGHGDLTVDFQSGQGVVRVVLLNVAYVPRLNYNLLSLPTIAADRPNSFFGDYLGIRLNLKGGKKVL 2097
            SE W  DSG S H+TP+ + LT+F   ++  +++A    L  EG  ++ +  ++G    +V++ +V YVP++NYNL+S+  +       F     G  LNL   KK L
Sbjct:   46 SEEWFLDSGCSNHMTPHREWLTSFDASRKTSIKLADSRKLAAEGTYNIVIRGKTGN---KVIVEDVFYVPKMNYNLMSIGQLVE---KGFSVTIEGNSLNLFDAKKNL 147
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BLAST of mRNA_H-canaliculatus_F_contig13461.2814.1 vs. uniprot
Match: UPI001CDB8C50 (uncharacterized protein LOC122853856 n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=UPI001CDB8C50)

HSP 1 Score: 59.7 bits (143), Expect = 1.100e-5
Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = 1 
Query: 1771 GASECWIFDSGASGHVTPNADHLTNFRQCQRFL-RVASGSLLPIEGHGDLTVDFQSGQGVVRVVLLNVAYVPRLNYNLLSLPTIAADR 2031
            G S+ W+FDSGAS H++   +  TN  + ++ L RV  G +L    +G + +   +G+  V++ L NV ++P L YNL S+ + AAD+
Sbjct:  284 GLSDKWLFDSGASYHMSGRKEWFTNMVKKEKSLIRVGDGKVLETNLYGTINISVFNGESWVKMSLNNVLFIPELKYNLFSMSS-AADK 370
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BLAST of mRNA_H-canaliculatus_F_contig13461.2814.1 vs. uniprot
Match: A0A026WX30_OOCBI (Copia protein n=1 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A026WX30_OOCBI)

HSP 1 Score: 59.7 bits (143), Expect = 1.480e-5
Identity = 41/124 (33.06%), Postives = 62/124 (50.00%), Query Frame = 1 
Query: 1753 VALQAGGASECWIFDSGASGHVTPNADHLTNFRQCQRFLRVASGSLLPIEGHGDLTVDFQSGQGVVRVVLLNVAYVPRLNYNLLSLPTIAADRPNSFFGDYLGIRL-NLKGGKKVLAPYVGKLY 2121
             AL      E W  DSGAS H+TP  + LT+F++ ++ + +  G+ +   G GD+ ++   G+     VL  V YVP L  NL S+ +IA D+      D    R+ +  G  +  A   GKLY
Sbjct:  134 TALNTQSNREAWYLDSGASEHMTPRKEWLTDFKRIKKPVTIG-GTTIDATGIGDIKLETFDGKKWKPCVLKKVLYVPNLKLNLFSVSSIA-DKDCKIIIDKDTCRIVDNNGNTRATAERDGKLY 255
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13461.2814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2K3LCP3_TRIPR9.380e-633.33Retrovirus-related Pol polyprotein from transposon... [more]
UPI001CDB8C501.100e-536.36uncharacterized protein LOC122853856 n=1 Tax=Aphid... [more]
A0A026WX30_OOCBI1.480e-533.06Copia protein n=1 Tax=Ooceraea biroi TaxID=2015173... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13461contigH-canaliculatus_F_contig13461:32..2206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2175
Cds size1977
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.636166-UTR-H-canaliculatus_F_contig13461:31..2291622929086.636166-UTR-H-canaliculatus_F_contig13461:31..229Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13461 32..229 +
1696845674.3025253-UTR-H-canaliculatus_F_contig13461:31..2291696845674.3025253-UTR-H-canaliculatus_F_contig13461:31..229Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13461 32..229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.653086-CDS-H-canaliculatus_F_contig13461:229..22061622929086.653086-CDS-H-canaliculatus_F_contig13461:229..2206Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13461 230..2206 +
1696845674.3128371-CDS-H-canaliculatus_F_contig13461:229..22061696845674.3128371-CDS-H-canaliculatus_F_contig13461:229..2206Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13461 230..2206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13461.2814.1prot_H-canaliculatus_F_contig13461.2814.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13461 230..2206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13461.2814.1

>prot_H-canaliculatus_F_contig13461.2814.1 ID=prot_H-canaliculatus_F_contig13461.2814.1|Name=mRNA_H-canaliculatus_F_contig13461.2814.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=659bp
MVNARRQADERAQRSDVAMRGVTEQLASILGRLGVESQAQAAPGGSTAGR
SDPAGAALRENMRADASGAAAFQHRPAGNGGTVPAQVGPREGEPGEGGQD
RGFGLDGESAHAPSDFGRQDNPRRVAPHLKMTVPSLKTEKGWSAFRDKVV
IYAKYYGFDDVLSYKIHIEVGSKTIDLEQYMREFGVSSAEYDKHLRAWVF
LDQAFASNNDRGRMKRVLSPSLLWQETQKWYAPSTVGRQVELRRKFDRYK
YPKDPTEALYEIEDIASEIAMTGTPVDYQLVYSTFVSSLPDEYEYEVRQL
SEMESFDRGEILRKLRSAFEVMQRRKKNSPQGHALFTDGGRGGGGARGRG
RGRGGGRGGRGRSSSQGGRGSSTDNGGGKKTAENGGKTGGETTTAEKLVA
QGPRCYNCRRRGHISADCKHEVCKRCGGVGHNASTCSSSPDVEDGLMTIS
HPEHLDVPDPGDGYISAMAMMANDGEVEEMSFVATEVDGDDVEASSSGAC
GAQGESIGSGSPIGCEGSVALQAGGASECWIFDSGASGHVTPNADHLTNF
RQCQRFLRVASGSLLPIEGHGDLTVDFQSGQGVVRVVLLNVAYVPRLNYN
LLSLPTIAADRPNSFFGDYLGIRLNLKGGKKVLAPYVGKLYLQYGVRVDG
SVEEIACAT
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mRNA from alignment at H-canaliculatus_F_contig13461:32..2206+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13461.2814.1 ID=mRNA_H-canaliculatus_F_contig13461.2814.1|Name=mRNA_H-canaliculatus_F_contig13461.2814.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2175bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13461:32..2206+ (Hapterophycus canaliculatus Oshoro5f female)
CTGGTCTGCCCTATGTACGTGGGCGACAACCGATAATAAACATCTAAACA
TCACTACTGTGTGTCAGTTACCGTGGGGCGTACGAACATCCTAGGATCTT
CCGGTACCAACCGTCCCTATGAGTGAAAGTGAATTTAGAGACACCTGGAG
GAACAGGTTCGTCTGTCTCGGGAAGATGCTGAAGCCCAACGAGAGGAGAT
GGTGAACGCGCGGCGTCAAGCCGACGAACGGGCCCAGCGATCGGACGTGG
CAATGCGAGGTGTCACCGAGCAACTAGCGTCCATCCTCGGCCGACTGGGA
GTGGAGTCCCAGGCGCAAGCGGCGCCTGGCGGGAGCACGGCAGGGAGAAG
CGACCCTGCCGGTGCTGCCCTTCGAGAAAATATGCGTGCTGACGCAAGCG
GCGCAGCAGCTTTTCAACATCGACCTGCTGGCAATGGTGGCACAGTGCCC
GCGCAGGTTGGCCCCAGAGAGGGCGAGCCTGGAGAAGGTGGACAAGATAG
AGGCTTCGGCCTCGACGGTGAGTCTGCCCATGCACCCTCCGACTTCGGTC
GGCAGGATAACCCCCGGAGAGTGGCGCCCCACCTGAAGATGACGGTCCCT
TCTCTCAAGACCGAAAAAGGGTGGTCTGCTTTTCGGGATAAAGTCGTTAT
TTACGCGAAATATTACGGCTTTGATGATGTCCTTTCGTACAAGATTCACA
TTGAAGTTGGATCGAAGACGATTGATCTCGAGCAATACATGAGGGAGTTT
GGTGTGTCGTCTGCAGAGTATGACAAGCACTTGAGGGCTTGGGTGTTCTT
GGACCAAGCGTTTGCGTCAAACAACGACAGGGGACGGATGAAACGCGTTT
TGTCTCCTAGCTTGCTTTGGCAAGAAACTCAGAAATGGTACGCCCCTTCT
ACTGTGGGAAGGCAGGTCGAGTTGCGACGCAAATTTGACCGCTACAAGTA
CCCCAAGGACCCGACCGAGGCATTGTATGAGATTGAGGACATTGCTTCGG
AGATCGCAATGACTGGTACGCCTGTGGATTACCAGCTCGTTTACAGCACT
TTTGTTTCCTCTTTGCCTGACGAGTACGAATACGAGGTTCGGCAACTGAG
CGAGATGGAGTCTTTTGATCGTGGCGAGATTCTGCGGAAATTGCGATCCG
CGTTCGAGGTGATGCAGCGGCGAAAGAAGAATTCGCCGCAAGGCCACGCC
CTCTTCACTGATGGGGGCCGTGGTGGAGGCGGCGCGCGCGGTCGCGGTCG
TGGCCGCGGAGGCGGCCGTGGTGGTCGTGGAAGGAGCAGCAGCCAAGGTG
GTCGCGGCTCATCGACTGACAATGGCGGCGGCAAAAAGACGGCGGAAAAC
GGCGGGAAAACCGGCGGTGAAACTACGACGGCGGAAAAGTTGGTGGCACA
AGGTCCTCGATGTTACAACTGTCGTCGTCGTGGGCACATCTCGGCGGATT
GCAAGCACGAGGTTTGCAAGCGGTGCGGTGGCGTTGGTCACAACGCGAGC
ACTTGCAGTTCTTCCCCGGACGTGGAGGATGGGCTCATGACGATCAGCCA
TCCCGAGCACCTCGATGTCCCGGATCCAGGAGATGGCTACATCTCCGCGA
TGGCGATGATGGCGAACGATGGCGAGGTGGAAGAAATGTCATTCGTGGCG
ACTGAGGTTGACGGCGACGACGTGGAAGCATCCTCTTCAGGGGCCTGTGG
GGCACAAGGCGAGTCGATTGGTTCTGGCAGTCCCATTGGTTGTGAAGGGA
GTGTGGCGTTGCAGGCTGGGGGGGCTAGCGAGTGTTGGATTTTCGACAGC
GGGGCAAGCGGCCATGTGACCCCCAATGCCGATCATCTCACGAATTTCCG
TCAGTGTCAGCGTTTTCTGCGTGTGGCGAGCGGATCGCTCCTCCCGATTG
AAGGTCATGGTGATCTTACCGTCGATTTCCAATCTGGCCAAGGTGTCGTG
CGTGTAGTGCTCTTAAACGTAGCCTACGTACCGCGCCTGAACTACAACCT
TCTCTCTCTGCCCACAATCGCCGCGGATAGACCGAATTCTTTCTTCGGTG
ATTACCTTGGAATTCGTTTGAACTTGAAGGGGGGAAAGAAGGTGCTAGCG
CCATACGTTGGCAAACTGTACCTGCAGTATGGGGTGAGGGTCGACGGCAG
TGTTGAAGAAATAGCCTGTGCAACG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13461:32..2206+

>mRNA_H-canaliculatus_F_contig13461.2814.1 ID=mRNA_H-canaliculatus_F_contig13461.2814.1|Name=mRNA_H-canaliculatus_F_contig13461.2814.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3954bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13461:32..2206+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGAACGCGCGGCGTCAAGCCGACGAACGGGCCCAGCGATCGGACGT
GGCAATGCGAGGTGTCACCGAGCAACTAGCGTCCATCCTCGGCCGACTGG
GAGTGGAGTCCCAGGCGCAAGCGGCGCCTGGCGGGAGCACGGCAGGGAGA
AGCGACCCTGCCGGTGCTGCCCTTCGAGAAAATATGCGTGCTGACGCAAG
CGGCGCAGCAGCTTTTCAACATCGACCTGCTGGCAATGGTGGCACAGTGC
CCGCGCAGGTTGGCCCCAGAGAGGGCGAGCCTGGAGAAGGTGGACAAGAT
AGAGGCTTCGGCCTCGACGGTGAGTCTGCCCATGCACCCTCCGACTTCGG
TCGGCAGGATAACCCCCGGAGAGTGGCGCCCCACCTGAAGATGACGGTCC
CTTCTCTCAAGACCGAAAAAGGGTGGTCTGCTTTTCGGGATAAAGTCGTT
ATTTACGCGAAATATTACGGCTTTGATGATGTCCTTTCGTACAAGATTCA
CATTGAAGTTGGATCGAAGACGATTGATCTCGAGCAATACATGAGGGAGT
TTGGTGTGTCGTCTGCAGAGTATGACAAGCACTTGAGGGCTTGGGTGTTC
TTGGACCAAGCGTTTGCGTCAAACAACGACAGGGGACGGATGAAACGCGT
TTTGTCTCCTAGCTTGCTTTGGCAAGAAACTCAGAAATGGTACGCCCCTT
CTACTGTGGGAAGGCAGGTCGAGTTGCGACGCAAATTTGACCGCTACAAG
TACCCCAAGGACCCGACCGAGGCATTGTATGAGATTGAGGACATTGCTTC
GGAGATCGCAATGACTGGTACGCCTGTGGATTACCAGCTCGTTTACAGCA
CTTTTGTTTCCTCTTTGCCTGACGAGTACGAATACGAGGTTCGGCAACTG
AGCGAGATGGAGTCTTTTGATCGTGGCGAGATTCTGCGGAAATTGCGATC
CGCGTTCGAGGTGATGCAGCGGCGAAAGAAGAATTCGCCGCAAGGCCACG
CCCTCTTCACTGATGGGGGCCGTGGTGGAGGCGGCGCGCGCGGTCGCGGT
CGTGGCCGCGGAGGCGGCCGTGGTGGTCGTGGAAGGAGCAGCAGCCAAGG
TGGTCGCGGCTCATCGACTGACAATGGCGGCGGCAAAAAGACGGCGGAAA
ACGGCGGGAAAACCGGCGGTGAAACTACGACGGCGGAAAAGTTGGTGGCA
CAAGGTCCTCGATGTTACAACTGTCGTCGTCGTGGGCACATCTCGGCGGA
TTGCAAGCACGAGGTTTGCAAGCGGTGCGGTGGCGTTGGTCACAACGCGA
GCACTTGCAGTTCTTCCCCGGACGTGGAGGATGGGCTCATGACGATCAGC
CATCCCGAGCACCTCGATGTCCCGGATCCAGGAGATGGCTACATCTCCGC
GATGGCGATGATGGCGAACGATGGCGAGGTGGAAGAAATGTCATTCGTGG
CGACTGAGGTTGACGGCGACGACGTGGAAGCATCCTCTTCAGGGGCCTGT
GGGGCACAAGGCGAGTCGATTGGTTCTGGCAGTCCCATTGGTTGTGAAGG
GAGTGTGGCGTTGCAGGCTGGGGGGGCTAGCGAGTGTTGGATTTTCGACA
GCGGGGCAAGCGGCCATGTGACCCCCAATGCCGATCATCTCACGAATTTC
CGTCAGTGTCAGCGTTTTCTGCGTGTGGCGAGCGGATCGCTCCTCCCGAT
TGAAGGTCATGGTGATCTTACCGTCGATTTCCAATCTGGCCAAGGTGTCG
TGCGTGTAGTGCTCTTAAACGTAGCCTACGTACCGCGCCTGAACTACAAC
CTTCTCTCTCTGCCCACAATCGCCGCGGATAGACCGAATTCTTTCTTCGG
TGATTACCTTGGAATTCGTTTGAACTTGAAGGGGGGAAAGAAGGTGCTAG
CGCCATACGTTGGCAAACTGTACCTGCAGTATGGGGTGAGGGTCGACGGC
AGTGTTGAAGAAATAGCCTGTGCAACGATGGTGAACGCGCGGCGTCAAGC
CGACGAACGGGCCCAGCGATCGGACGTGGCAATGCGAGGTGTCACCGAGC
AACTAGCGTCCATCCTCGGCCGACTGGGAGTGGAGTCCCAGGCGCAAGCG
GCGCCTGGCGGGAGCACGGCAGGGAGAAGCGACCCTGCCGGTGCTGCCCT
TCGAGAAAATATGCGTGCTGACGCAAGCGGCGCAGCAGCTTTTCAACATC
GACCTGCTGGCAATGGTGGCACAGTGCCCGCGCAGGTTGGCCCCAGAGAG
GGCGAGCCTGGAGAAGGTGGACAAGATAGAGGCTTCGGCCTCGACGGTGA
GTCTGCCCATGCACCCTCCGACTTCGGTCGGCAGGATAACCCCCGGAGAG
TGGCGCCCCACCTGAAGATGACGGTCCCTTCTCTCAAGACCGAAAAAGGG
TGGTCTGCTTTTCGGGATAAAGTCGTTATTTACGCGAAATATTACGGCTT
TGATGATGTCCTTTCGTACAAGATTCACATTGAAGTTGGATCGAAGACGA
TTGATCTCGAGCAATACATGAGGGAGTTTGGTGTGTCGTCTGCAGAGTAT
GACAAGCACTTGAGGGCTTGGGTGTTCTTGGACCAAGCGTTTGCGTCAAA
CAACGACAGGGGACGGATGAAACGCGTTTTGTCTCCTAGCTTGCTTTGGC
AAGAAACTCAGAAATGGTACGCCCCTTCTACTGTGGGAAGGCAGGTCGAG
TTGCGACGCAAATTTGACCGCTACAAGTACCCCAAGGACCCGACCGAGGC
ATTGTATGAGATTGAGGACATTGCTTCGGAGATCGCAATGACTGGTACGC
CTGTGGATTACCAGCTCGTTTACAGCACTTTTGTTTCCTCTTTGCCTGAC
GAGTACGAATACGAGGTTCGGCAACTGAGCGAGATGGAGTCTTTTGATCG
TGGCGAGATTCTGCGGAAATTGCGATCCGCGTTCGAGGTGATGCAGCGGC
GAAAGAAGAATTCGCCGCAAGGCCACGCCCTCTTCACTGATGGGGGCCGT
GGTGGAGGCGGCGCGCGCGGTCGCGGTCGTGGCCGCGGAGGCGGCCGTGG
TGGTCGTGGAAGGAGCAGCAGCCAAGGTGGTCGCGGCTCATCGACTGACA
ATGGCGGCGGCAAAAAGACGGCGGAAAACGGCGGGAAAACCGGCGGTGAA
ACTACGACGGCGGAAAAGTTGGTGGCACAAGGTCCTCGATGTTACAACTG
TCGTCGTCGTGGGCACATCTCGGCGGATTGCAAGCACGAGGTTTGCAAGC
GGTGCGGTGGCGTTGGTCACAACGCGAGCACTTGCAGTTCTTCCCCGGAC
GTGGAGGATGGGCTCATGACGATCAGCCATCCCGAGCACCTCGATGTCCC
GGATCCAGGAGATGGCTACATCTCCGCGATGGCGATGATGGCGAACGATG
GCGAGGTGGAAGAAATGTCATTCGTGGCGACTGAGGTTGACGGCGACGAC
GTGGAAGCATCCTCTTCAGGGGCCTGTGGGGCACAAGGCGAGTCGATTGG
TTCTGGCAGTCCCATTGGTTGTGAAGGGAGTGTGGCGTTGCAGGCTGGGG
GGGCTAGCGAGTGTTGGATTTTCGACAGCGGGGCAAGCGGCCATGTGACC
CCCAATGCCGATCATCTCACGAATTTCCGTCAGTGTCAGCGTTTTCTGCG
TGTGGCGAGCGGATCGCTCCTCCCGATTGAAGGTCATGGTGATCTTACCG
TCGATTTCCAATCTGGCCAAGGTGTCGTGCGTGTAGTGCTCTTAAACGTA
GCCTACGTACCGCGCCTGAACTACAACCTTCTCTCTCTGCCCACAATCGC
CGCGGATAGACCGAATTCTTTCTTCGGTGATTACCTTGGAATTCGTTTGA
ACTTGAAGGGGGGAAAGAAGGTGCTAGCGCCATACGTTGGCAAACTGTAC
CTGCAGTATGGGGTGAGGGTCGACGGCAGTGTTGAAGAAATAGCCTGTGC
AACG
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