mRNA_H-canaliculatus_F_contig1346.2812.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1346.2812.1
Unique NamemRNA_H-canaliculatus_F_contig1346.2812.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1346.2812.1 vs. uniprot
Match: D7FME6_ECTSI (Similar to mitochondrial import inner membrane translocase,TIM17/22/23-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME6_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 3.390e-61
Identity = 119/173 (68.79%), Postives = 137/173 (79.19%), Query Frame = 2 
Query:  980 MDGWSDDHVDP----QNPYAPDCASRAAEGFYVGALYGTVWGVLGRASASPISPSTPAMGALRSLSGTAPQSQPA-GLGRREATGYLRAFSRGAAGYGVAAASTAGVFGVFVGVVNAGTCACERFTGKKGWLNSAFGGAAAGLSVALLSRHTRTPPMVAGYVAGSAAITSIVA 1483
            M+ W+   V+P       YAPDC+SRAAEGFYVGALYG VWGV+GRA+ +P  PSTPAMG L+  SG   Q+QPA GL  R  +  +RAF RGAAGYG+AAASTAGVFGVFVG+VNAGTC CER  GKK W N+AFGGAAAGLSVALLSRHTRTP M+A +VAG+AAITS+VA
Sbjct:    1 MEDWN---VEPPEMTHKDYAPDCSSRAAEGFYVGALYGAVWGVIGRAAHAPTLPSTPAMGELKPPSGL--QAQPAPGLETRGVSRQVRAFGRGAAGYGIAAASTAGVFGVFVGMVNAGTCGCERLRGKKDWFNNAFGGAAAGLSVALLSRHTRTPQMLAAHVAGAAAITSVVA 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1346.2812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FME6_ECTSI3.390e-6168.79Similar to mitochondrial import inner membrane tra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1346contigH-canaliculatus_F_contig1346:18671..22102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1875
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1346.2812.1prot_H-canaliculatus_F_contig1346.2812.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1346 19033..21123 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.481034-UTR-H-canaliculatus_F_contig1346:18670..190321622929086.481034-UTR-H-canaliculatus_F_contig1346:18670..19032Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1346 18671..19032 -
1696845674.237401-UTR-H-canaliculatus_F_contig1346:18670..190321696845674.237401-UTR-H-canaliculatus_F_contig1346:18670..19032Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1346 18671..19032 -
1622929086.5757537-UTR-H-canaliculatus_F_contig1346:21123..221021622929086.5757537-UTR-H-canaliculatus_F_contig1346:21123..22102Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1346 21124..22102 -
1696845674.2922382-UTR-H-canaliculatus_F_contig1346:21123..221021696845674.2922382-UTR-H-canaliculatus_F_contig1346:21123..22102Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1346 21124..22102 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.4984646-CDS-H-canaliculatus_F_contig1346:19032..192011622929086.4984646-CDS-H-canaliculatus_F_contig1346:19032..19201Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1346 19033..19201 -
1696845674.2528315-CDS-H-canaliculatus_F_contig1346:19032..192011696845674.2528315-CDS-H-canaliculatus_F_contig1346:19032..19201Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1346 19033..19201 -
1622929086.5192068-CDS-H-canaliculatus_F_contig1346:19783..199861622929086.5192068-CDS-H-canaliculatus_F_contig1346:19783..19986Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1346 19784..19986 -
1696845674.262285-CDS-H-canaliculatus_F_contig1346:19783..199861696845674.262285-CDS-H-canaliculatus_F_contig1346:19783..19986Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1346 19784..19986 -
1622929086.5343852-CDS-H-canaliculatus_F_contig1346:20439..205011622929086.5343852-CDS-H-canaliculatus_F_contig1346:20439..20501Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1346 20440..20501 -
1696845674.2710853-CDS-H-canaliculatus_F_contig1346:20439..205011696845674.2710853-CDS-H-canaliculatus_F_contig1346:20439..20501Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1346 20440..20501 -
1622929086.552157-CDS-H-canaliculatus_F_contig1346:21023..211231622929086.552157-CDS-H-canaliculatus_F_contig1346:21023..21123Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1346 21024..21123 -
1696845674.2825985-CDS-H-canaliculatus_F_contig1346:21023..211231696845674.2825985-CDS-H-canaliculatus_F_contig1346:21023..21123Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1346 21024..21123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1346.2812.1

>prot_H-canaliculatus_F_contig1346.2812.1 ID=prot_H-canaliculatus_F_contig1346.2812.1|Name=mRNA_H-canaliculatus_F_contig1346.2812.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=178bp
MDGWSDDHVDPQNPYAPDCASRAAEGFYVGALYGTVWGVLGRASASPISP
STPAMGALRSLSGTAPQSQPAGLGRREATGYLRAFSRGAAGYGVAAASTA
GVFGVFVGVVNAGTCACERFTGKKGWLNSAFGGAAAGLSVALLSRHTRTP
PMVAGYVAGSAAITSIVAFATGPPLAS*
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mRNA from alignment at H-canaliculatus_F_contig1346:18671..22102-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1346.2812.1 ID=mRNA_H-canaliculatus_F_contig1346.2812.1|Name=mRNA_H-canaliculatus_F_contig1346.2812.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3432bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1346:18671..22102- (Hapterophycus canaliculatus Oshoro5f female)
TCGCGGTTTGTGTACGGATTGCTTCTGAGCTTTGTGGTACTTCGTGTACA
CGAGATCGACGGCCACTTGCATCCAGCTGTATTGCAGGGTATGCTTTGGA
TTTCGAAATGTCCTGTTCCGCGTCGCTGTTGCTCGATCTACGGGTTCTCT
ATTCAGTTGTAGAACATGTTCGATGCACGTGCCTGGTCGTCAGCTCGAAG
ACGAGGACTGGCCCAAACCTTTGTTCCCTCCACCATACGCAAGATTGCTG
TTCTTCTTTATCATTCTTGGGGAAGGATCTTCGAAACTGCTGGCGAGCGA
ATTACACAGAGCCGTTTCGTGGATGCTCGCAGTTGCGGATTTCGGTTGAT
ACGTGGCCTCTGCTCGCGACTCACTGGATGCAACTGACGTTATCCGATGA
TGTTGTTCGACGCCGGCGTGTGTGCAAGGCGGTGCGATCATGATTTCGAT
CAGGATTCTCCGTACATGCATAGTCTTGTACCACTAGAGACCTCTCTCCG
ACCTTGTCACTCGGTTCTTCGCCATACACAGGCTGGGAGCCCAGCTGGGG
TGCCTGTGATAGCGACAGCGCTGAGCGCAAATAGCGGTGGTCCCTATTTG
CAGAAATTCGTTGCTCGGCAGTACAGCAGGAGCATCGAAGATACTTCTCC
GCATAGCAGCAGCGAGCTCGGGGACCTACTCAAGCGAGAGATCGGTAGCT
ATGGGCTACATAGGTCAACTGCAACCTGTTCTATTTCGCATGGAGACGTG
GGGTATTCAGGCACTGAGGCGCCAGTTCCGTTCGTCGTCTCTCTGTTGAT
TCGCTACTCCAATTTATCAAAGCGGCCTGCGGACGACTCCGACTGACTGG
CCTCCACTGGCGGCCAGCATCCAGGATACACAAGGAGAGAGAGCAGCGAC
AGGAGCAGCAGCGGCTCGGCGGCAGCGGCGGTGGTAGCAGCAACAGCAGC
AGCACTTACAAGAAAGCAGTAGAGGCAGCATGGACGGCTGGAGCGACGAC
CACGTAGACCCTCAAAACCCGTATGCGCCGGACTGCGCATCGAGAGCGGC
GGAGGGGTTCTACGTGGGGGCGTTGTATGGTGCGTGGTTTCTCTGTTGAA
CCGACGCGTGTGGAGATTGTGTCTTCAGCCTTCCTCCGGGCCTCATAGAT
TGTTTGGCCGAGACTCTCCAGGGCCTTCCCTCTTCGGTCACCACACCCAA
CTCTACCTCACAAGTCCCTCCTTCCTCTTCCTGAGAGTAGCGCCCCTGTG
CGTACATGTGTCCTGTGCCGAAGCTTGTTTACTTGGTGTTTTCTTTCGAG
CACGGAGTTTATCCTACCACGTGGTTCTGTCGGACCAGTGAGTTGGGTGG
AATGCGCGTTATGATTGGGGTACAACGTCTGCGTTCTCCCTTCCAACCGG
CCTCTATGTAGGCGCTGCTGCTGCTCTCTTGCATGATCCGTTGGCTTGCT
TATTCATTTCAGCACTCAGCTGGGGAGGCAACGAAAGCTGTATCAAGATC
AACTCTATCAACTGCTCGCTGTCTTCTGTCTGCAACACACCAACCGCCCA
GATCTTTCCCACAAGAACCCCCGCCTTTTTGTGCAAACCCCATTGTCCCA
GGGACAGTCTGGGGAGTTCTAGGACGCGCTTCGGCTTCCCCTATCTCACC
GTCAACACCTGCGGTGAGCTTTATTCCTCGAAGAAGCGCTGACTTCGCTG
GCTTTTCCGAACACGATGTCGTAGATAAAAGAGTTTTTGAGTTCTGGGGA
AGGCATCTCCCTTGCGCCCCTCTCGGCGACGACAGCCTCTCCCGCTTTCC
ATCGTCCAGGAACGCTCTTTCTGCGCTACGAGAATCTAGGGAGCCCGTAT
ATGTGCTGCCCGTTTGTCGGCGAAAGCAGGGAGAAAGGGAGAGGCGGACA
GGCTACCTTGGAAATTCGTGGTATGTTCCACTAATGGTGGAAGGTGCCGC
ACGCGAGTTTTTCGCGCTCCGTCAAGTGCTTTGCCTTCCTTCCAGCTTCT
CCCAACCCCCGCCCCGCAAACACTTCCAACTCTTTTTCTCCCAGGCTTTC
TAGCATCTAACATCTAACATGTTCCTACCCTCATCCGACCCCCACCCTAC
TTCTCCGCTCGCGCAGATGGGAGCTTTGAGATCGTTGTCCGGGACGGCGC
CTCAATCGCAACCTGCTGGGCTGGGGAGGCGAGAGGCCACGGGGTATCTT
CGCGCGTTCTCGAGGGGTGCCGCGGGGTACGGCGTTGCCGCAGCTTCGAC
GGCTGGCGTCTTCGGGGTGTTTGTGGGCGTGGTCAACGCCGGAACCTGCG
CCTGCGAACGTTTCACAGGGTGCGTGGCGATTCGATAGAGTTTGGTTTGA
CTTTGTTTCTGGAGCCCTCCCCGCTTGCGCACTCTATTATGCGTTCAGTT
GGACATCTTCGATCGCAGATCGCGGGGTTCGCCTCAATCGTGTCGAGGTA
ACGCGGAATGTGGAGGTACGACTAGCGGTCTGCAACGGCTCGTATTGGAG
GACGAACACAAATTGAAAATATGATGTCGAAGTTTATCAAGTTTTGACCC
TGCAAAATGTCAAGCTTTGAAGCTTCGAAACACAAACTCCATGGACGAGT
CTGCAAATGGGATCTTCTCTTTATTTTGACGTAGCTGGGCGCCGCCCGAT
GGCCCCGCCGGTGTGCTTATAGCGGCCTGTCTTTCGCTGAAGAGCCTCCT
TTCCTTTTTTAGTTAAACTGCGGCACACACATATCTGTGTGCGCGCTCCT
GAGAACCGTCCCAGTCCTTCACGTTTGACTTCCGCTTGTATTGCGTCTTG
TTGAAATCGCAGCAAGTCTCCGTCACGGTGCTTTGTCTATTATCTGAAAA
GTGCAAGAACTGGGTTGGCTAAACAACGATTCTGTTCTCGCGCTCGCGCA
GGAAAAAGGGATGGCTCAACAGCGCATTCGGTGGAGCGGCGGCGGGACTG
AGCGTAGCCTTACTCTCGAGACATACCCGCACACCGCCAATGGTCGCGGG
CTATGTCGCGGGGTCAGCGGCGATCACGTCTATCGTTGCTTTCGCCACAG
GGCCACCACTTGCTAGTTGATGAGCGAAGACCTGATAGTTGTCCGGTGGA
AATAGTTTTGTGCTTTGTTCTTCCAATCGTAAGAACAACACAGTCTTAGT
TTTAGCCTCAACGTGCGCGTGAATATTTTATAATGCGCGAGTCAGCGGCG
CAACCCAAGAGCCTTCCATGCAGATTGTATTTTAGGAGATCCTCTCACTT
GTGCAATGATCGTGTCATTACCCTTCGGTTCCAGAGGGCTGGCTCATCTG
TTTTGTTTCTTCCTTGATTGCTTCGTCATGTTTCGAACGAGGATCTACGA
CACAGACCAAAATCCAATCCTTTGAAGGGACACTTGATAGGTGGCGAGCT
TTGAACAGTCGGAAATGTCGATCCCTTATGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1346:18671..22102-

>mRNA_H-canaliculatus_F_contig1346.2812.1 ID=mRNA_H-canaliculatus_F_contig1346.2812.1|Name=mRNA_H-canaliculatus_F_contig1346.2812.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1068bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1346:18671..22102- (Hapterophycus canaliculatus Oshoro5f female)
ATGGACGGCTGGAGCGACGACCACGTAGACCCTCAAAACCCGTATGCGCC
GGACTGCGCATCGAGAGCGGCGGAGGGGTTCTACGTGGGGGCGTTGTATG
ATGGACGGCTGGAGCGACGACCACGTAGACCCTCAAAACCCGTATGCGCC
GGACTGCGCATCGAGAGCGGCGGAGGGGTTCTACGTGGGGGCGTTGTATG
GGACAGTCTGGGGAGTTCTAGGACGCGCTTCGGCTTCCCCTATCTCACCG
TCAACACCTGCGGGACAGTCTGGGGAGTTCTAGGACGCGCTTCGGCTTCC
CCTATCTCACCGTCAACACCTGCGATGGGAGCTTTGAGATCGTTGTCCGG
GACGGCGCCTCAATCGCAACCTGCTGGGCTGGGGAGGCGAGAGGCCACGG
GGTATCTTCGCGCGTTCTCGAGGGGTGCCGCGGGGTACGGCGTTGCCGCA
GCTTCGACGGCTGGCGTCTTCGGGGTGTTTGTGGGCGTGGTCAACGCCGG
AACCTGCGCCTGCGAACGTTTCACAGGATGGGAGCTTTGAGATCGTTGTC
CGGGACGGCGCCTCAATCGCAACCTGCTGGGCTGGGGAGGCGAGAGGCCA
CGGGGTATCTTCGCGCGTTCTCGAGGGGTGCCGCGGGGTACGGCGTTGCC
GCAGCTTCGACGGCTGGCGTCTTCGGGGTGTTTGTGGGCGTGGTCAACGC
CGGAACCTGCGCCTGCGAACGTTTCACAGGGAAAAAGGGATGGCTCAACA
GCGCATTCGGTGGAGCGGCGGCGGGACTGAGCGTAGCCTTACTCTCGAGA
CATACCCGCACACCGCCAATGGTCGCGGGCTATGTCGCGGGGTCAGCGGC
GATCACGTCTATCGTTGCTTTCGCCACAGGGCCACCACTTGCTAGTTGAG
AAAAAGGGATGGCTCAACAGCGCATTCGGTGGAGCGGCGGCGGGACTGAG
CGTAGCCTTACTCTCGAGACATACCCGCACACCGCCAATGGTCGCGGGCT
ATGTCGCGGGGTCAGCGGCGATCACGTCTATCGTTGCTTTCGCCACAGGG
CCACCACTTGCTAGTTGA
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