mRNA_H-canaliculatus_F_contig1346.2813.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1346.2813.1
Unique NamemRNA_H-canaliculatus_F_contig1346.2813.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1346.2813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1346contigH-canaliculatus_F_contig1346:22451..26538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size608
Cds size426
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929085.8889778-UTR-H-canaliculatus_F_contig1346:22450..225661622929085.8889778-UTR-H-canaliculatus_F_contig1346:22450..22566Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1346 22451..22566 +
1696845674.01499-UTR-H-canaliculatus_F_contig1346:22450..225661696845674.01499-UTR-H-canaliculatus_F_contig1346:22450..22566Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1346 22451..22566 +
1622929085.9063659-UTR-H-canaliculatus_F_contig1346:24570..246361622929085.9063659-UTR-H-canaliculatus_F_contig1346:24570..24636Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1346 24571..24636 +
1696845674.0246317-UTR-H-canaliculatus_F_contig1346:24570..246361696845674.0246317-UTR-H-canaliculatus_F_contig1346:24570..24636Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1346 24571..24636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929085.9231791-CDS-H-canaliculatus_F_contig1346:24636..247731622929085.9231791-CDS-H-canaliculatus_F_contig1346:24636..24773Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1346 24637..24773 +
1696845674.0360458-CDS-H-canaliculatus_F_contig1346:24636..247731696845674.0360458-CDS-H-canaliculatus_F_contig1346:24636..24773Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1346 24637..24773 +
1622929085.945074-CDS-H-canaliculatus_F_contig1346:24911..249661622929085.945074-CDS-H-canaliculatus_F_contig1346:24911..24966Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1346 24912..24966 +
1696845674.04623-CDS-H-canaliculatus_F_contig1346:24911..249661696845674.04623-CDS-H-canaliculatus_F_contig1346:24911..24966Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1346 24912..24966 +
1622929085.9643838-CDS-H-canaliculatus_F_contig1346:25383..254631622929085.9643838-CDS-H-canaliculatus_F_contig1346:25383..25463Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1346 25384..25463 +
1696845674.0553586-CDS-H-canaliculatus_F_contig1346:25383..254631696845674.0553586-CDS-H-canaliculatus_F_contig1346:25383..25463Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1346 25384..25463 +
1622929085.9771013-CDS-H-canaliculatus_F_contig1346:25926..259841622929085.9771013-CDS-H-canaliculatus_F_contig1346:25926..25984Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1346 25927..25984 +
1696845674.0650318-CDS-H-canaliculatus_F_contig1346:25926..259841696845674.0650318-CDS-H-canaliculatus_F_contig1346:25926..25984Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1346 25927..25984 +
1622929086.004266-CDS-H-canaliculatus_F_contig1346:26442..265381622929086.004266-CDS-H-canaliculatus_F_contig1346:26442..26538Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1346 26443..26538 +
1696845674.0741944-CDS-H-canaliculatus_F_contig1346:26442..265381696845674.0741944-CDS-H-canaliculatus_F_contig1346:26442..26538Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1346 26443..26538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1346.2813.1prot_H-canaliculatus_F_contig1346.2813.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1346 24637..26538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1346.2813.1

>prot_H-canaliculatus_F_contig1346.2813.1 ID=prot_H-canaliculatus_F_contig1346.2813.1|Name=mRNA_H-canaliculatus_F_contig1346.2813.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=142bp
MSSRSSKRRSAVGAGNSSSKAGPAGGGGGGGGGASEDPGEDDGGGRSLRN
VPSRRSTSRGGDTQDRRKRQRKEVVEYKEAVLDVIVTAKDRESKRLVQLG
EKRASQQRSKAGSSSNSSNSSTTRKQEKDAAAAAAARQAKKE
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mRNA from alignment at H-canaliculatus_F_contig1346:22451..26538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1346.2813.1 ID=mRNA_H-canaliculatus_F_contig1346.2813.1|Name=mRNA_H-canaliculatus_F_contig1346.2813.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4088bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1346:22451..26538+ (Hapterophycus canaliculatus Oshoro5f female)
GGCGGAGTGAGTTGAGAAGGGGGGTGGGTCTCTGGGATACGAGCGAGTGA
CTCGGCTGACGCTTGGATTTGGTGGAGCAAAACGAGGGAATGGCGCTTGC
GTGAAAAACGCTCGAGGTGAGGTGTGTTGGTGCTACTCTGTTGTCTCCGT
GCGCCGGCTGAACTTCGATGATACTCGCCCACGATTCCAAGTGGGAAAAA
CGCGGCCAGTTGTCTCCTCCCGTACTCTATTTTCAAGTCGTTTCCTCGAT
CGATATACCGGCACCCCCTCGATCGCGCAGTACAACGTTCGTCCTCGAAG
GTTCCGTATCTATCTTTTGAAATAGAGGGTTGGCGGCTGCGGTGCTGTGC
TACCAGCACCAGCGGTGGCAGCACCTAATGCAAAAGCAACGTCGAAGCGA
ATCGTTCGCCGATTGCAAAGTACCCTAAGCTCAATCTTCGAGATGCTTCC
GTGTCTTGCAATGTTACTCTGCCGCGTTAAACATTTCATTACGAATCTAC
TCTGTAGCATCCTGCTTCTTGTGCTCGGTTTTTGTTTTTTTAATTCGCAA
CACACCCTTTCCCCTCTTCTCTGTCTCTCTCCTGGTGACGAAAACATGGT
CTTGTCCATTTGAGACCTCCAAGCCTGCTGAAACCAGCCGCCATCCCTCT
TTCTTCTGCATATGCGAGGGTCTAATCGGCGCGTACCTTCGTGTCTATGT
CACCATCCCTCCCACAAAGCAACACTCCGCGTTTTCAACGTTTGATGTCC
CGACGGATGGTGCAACTAACTACAAGTTTTTGAGTAGGCCTCCCGGAAGC
GCGGTGGACCGCATGATCCATCGCTCCACCTCTACGCTACCCGCCCAAAT
ATCCGCCCTCGCCCGCCATTGAGCGCACGACTTTCGGGCGCAACTTTTGC
CCCGCGTCGAGCTCCGCCGGATAAATATCAAAGCTGATGGACAGCGCCCT
TTCATGCTTGATGCCCTCCCTCCCCTCGACGCATGAGGAGAGGGAGAACC
TTGATTTTCTCGTTTACTCGCGGGACTTGAGGAGATCGCTGCATGAGTAG
ATCTATGATGACCACTTGCCGATATTTGCCTCAGCCGTCGTCTATTTCCA
AGTTTCCTGGTTTGCACCCATCTTCTCTCTTGCTCCCTCTTGAGCGTCGG
AACTTTTGCGCCTTTTGACTCCCTCGTGCCGGTTGGAGGTATGATACGCC
TTTCAAGAGGTTTTTGGTGCCACGACAGTAGGGGGAAGAGACGACAACGG
CGACGACAGCTGCAGCAGCAGCAGCAGCAGCAGCAATAACAACAACAACA
AAAACAACAACAACAACAACAACAAAAACAACAACAACAACAACAACAAC
AACAACAACAACAACAATAACGAGACTACGAGTAAGACTGCAAAGATAGC
AACAAATAACAAGTGCATGTTGAGACAGAACGGGCAATTGTTGACCGCTT
TGTGTCGAATTTCTTGAGAAGGGGCCAACACAACCACGCAAGATACTGGT
CGTCCGTGATCCACTAGCCCCCCACTTCTCTAGGCATTTCTCAATCCCAG
TCTGTCCTTTTTGACCGCGTAGCGGCCCAACCACAAGTCCTTTCACTTCG
AAGACGCCCCACGAGATACAGACGAAGCTCTTGATGCCGCTGTGTGGAAC
GGCTCAGTCAAGGAGGTGGTGGTGACGCCCCCCCTCCGGACCTTCCCCGT
CTATGCCCCCCCTCTGGTTGTTCCCACTACCACTAGCACCACCACTACTG
CTGCTGCTGCTGCTGCTGCTACTGCGGTTATTGGCTCTCGTCGGGCGTCG
GACGTCCCCGTCCGTGTGCACGATAGACACACAGGCGAGGCCGAACGCAC
AAGTTCCTCCGTACCAATCCTCGTAGCTCAGTTGTCGGCAGGCACGGCCT
GTGAGGGATCCAAGCTCGTCTGAATGAAGTCAGTCGGCGATGATGGAGCC
TCCATGCGACCTTCACGGGAGCAACCGAATACACAGACAGACGCACGAGA
AGATAAGCAGGCAGGGAGGCAGGCAGGCAGGCGGGCGCTACCCGGGTCCG
CAGCTCTTTGGATACCAACCCTGTTTCACGTGCCCCTCGTAATCTGCGTC
AATCTGCGCCCATCACACAGGACCCCGGTGAGCAGCGAAATAGTCTTCCG
TGAAGGATTTCGACGGTGTCGTAGGGCGCAAGACACATGTCATCGAGAAG
CAGCAAGAGGCGGAGCGCGGTCGGCGCCGGAAACTCCTCCTCCAAAGCCG
GGCCCGCCGGTGGGGGAGGCGGCGGCGGCGGCGGTGCGTCAGAGGACCCG
GGAGAGGACGACGGCGGAGGCAGGCAAGTGGGCTTGAGTTGTGGGAGGGC
ATCGCTCGTCCCCACGTTCCTCTTCGACGTGCTTGCCCACCAGGTGGCCT
ACGTGTACGCAAGTCCGTCACCTGTATGACCTTCCATGTTTTGCACGGTC
GTTGACTCCAGGTCCTTGCGGAACGTTCCTTCTCGCCGCAGCACCTCCAG
AGGGGGTGACACCCAGGTGAGGCGTGTGTGCGCTCGTCCGTCTGTGGTTC
TTGTGTTCTTACGTCGATCCTTTCATTGCTCCAGCGGCTGGTGTGGTTGG
ATTCGCGCGGCGCGACGGTGGGGGGCACGACCCGCCTTTCTCGCCACCTC
GTCACAAAAGGCGAAAAGCCTTGTGTCTGTGAGCGCGAGGGGAAAAAGTG
TGTGTGTTCAATTCCGGTGCTTGTTCTCCCTTTTTTTGGCCTTCTTGTTT
TCCCCACTACATAGCAGGCGAATCTCGTTTCGTCACAGCGGCGTCACCCC
TGATTTTTTGGAGAACCACTGCTGCGTCAGAGACGCACCCCTCCCCCCTC
CCCCCTCCCCCTTTCGGTTACAAGCACCCGCACCTTGCTTTGCTCTGTCG
TGTCGTGTTGTGTTGCGTGTGCTACCACGGCAGGACCGACGCAAGCGGCA
GCGGAAGGAGGTGGTGGAGTATAAGGAGGCCGTTCTAGATGTGATTGTCA
CCGCCAAAGATAGGTACGGTGTGTGGGTAACTAGCCGCTTCGCTGCTGCT
GCTGCTGCTGCTGCTACTGTTCTTGCCATAGCCGCAATCTCTCGAGTACA
CACGCACGCTCCGTGTCTCTGCTGACTGAGTGGTCCAGCTTAAGGTTGAG
GTGCTCTGTGTCTGCGCATTCTGCCAGATTCCTTCCGCTCACGCATGCCG
ACACCATCAAACCTTGCCTCACTTTTCGCGTTCCTTCTCTTCCCTCTCCT
GGGTCTAGCCCTCCACCTGCTTGCCTGTTTTCCTGCGTGCGTGCTTGTCG
TCGCTGAGTCTGTCCACGCCGTTTAGCTCCAGATACGTTGAATTTCTCCT
ACATCCGCCCCCTTGTTCCCGTATGAGTCTGTCTCTCTTTCTCTTTCCTG
CCTTCCTCGAGTACAACGCGCTTATTGTGCATCACGTGACCCATCAAATG
CATCTCGTCTGACCGCTGTCCTCCAGAGAAAGCAAGCGGCTGGTGCAACT
AGGGGAGAAGCGGGCTAGCCAACAGCGCAGCAAGGTACATATCTGCTCGA
TTTTCGCTCGTGTGCTCAACACAAAAATGCGACTCACGATTGGTTTGGTA
TACACCGGGACCGGCAAGGTGCGCGGATGGGAAATCGGGGCCCTCCCCAT
GGTAAAACACGCTCCTTCATGCAGGGACATGGCATGGAGCACGACAGATT
GTTTGATGGTCTCGGCTTGTTGTCGTTGTCGTTGTGGCCCGTGCGATTGC
GGCGGGCTTCTTCGCGGTGACTTTGACCGAGCACTGTGATTTTTGTCTTG
TCATCGTAAGTGTTTTTGCTCGCATGGACGTTTCTCCTCCATCCGAAGAG
CCATGTTTGGAACAGAATTGGGTGTACCTGTTCCTCAACGGACGGCCCCG
CTTTATTGCTCGCCGTGTAACTATTTTTTATTGGTCCGGGGGCCGTGCTG
CGTTGGCGGCGTGTGTTTTATTGGCCCCTTTTTGTTACGTAGGCCGGCAG
CAGCAGCAACAGCAGCAACAGTAGCACCACCCGGAAGCAGGAGAAGGACG
CCGCCGCCGCCGCCGCTGCGCGACAAGCCAAGAAGGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1346:22451..26538+

>mRNA_H-canaliculatus_F_contig1346.2813.1 ID=mRNA_H-canaliculatus_F_contig1346.2813.1|Name=mRNA_H-canaliculatus_F_contig1346.2813.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=852bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1346:22451..26538+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCATCGAGAAGCAGCAAGAGGCGGAGCGCGGTCGGCGCCGGAAACTC
CTCCTCCAAAGCCGGGCCCGCCGGTGGGGGAGGCGGCGGCGGCGGCGGTG
CGTCAGAGGACCCGGGAGAGGACGACGGCGGAGGCAGATGTCATCGAGAA
GCAGCAAGAGGCGGAGCGCGGTCGGCGCCGGAAACTCCTCCTCCAAAGCC
GGGCCCGCCGGTGGGGGAGGCGGCGGCGGCGGCGGTGCGTCAGAGGACCC
GGGAGAGGACGACGGCGGAGGCAGGTCCTTGCGGAACGTTCCTTCTCGCC
GCAGCACCTCCAGAGGGGGTGACACCCAGGTCCTTGCGGAACGTTCCTTC
TCGCCGCAGCACCTCCAGAGGGGGTGACACCCAGGACCGACGCAAGCGGC
AGCGGAAGGAGGTGGTGGAGTATAAGGAGGCCGTTCTAGATGTGATTGTC
ACCGCCAAAGATAGGACCGACGCAAGCGGCAGCGGAAGGAGGTGGTGGAG
TATAAGGAGGCCGTTCTAGATGTGATTGTCACCGCCAAAGATAGAGAAAG
CAAGCGGCTGGTGCAACTAGGGGAGAAGCGGGCTAGCCAACAGCGCAGCA
AGAGAAAGCAAGCGGCTGGTGCAACTAGGGGAGAAGCGGGCTAGCCAACA
GCGCAGCAAGGCCGGCAGCAGCAGCAACAGCAGCAACAGTAGCACCACCC
GGAAGCAGGAGAAGGACGCCGCCGCCGCCGCCGCTGCGCGACAAGCCAAG
AAGGAGGCCGGCAGCAGCAGCAACAGCAGCAACAGTAGCACCACCCGGAA
GCAGGAGAAGGACGCCGCCGCCGCCGCCGCTGCGCGACAAGCCAAGAAGG
AG
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