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Homology
BLAST of mRNA_H-canaliculatus_F_contig13458.2809.1 vs. uniprot
Match: D8LMX5_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX5_ECTSI) HSP 1 Score: 337 bits (865), Expect = 1.410e-104 Identity = 192/233 (82.40%), Postives = 201/233 (86.27%), Query Frame = 1
Query: 1 CPLFFIVQVRLMLGTGLIKCTERERENGTSGASLLHSCVTDFAGSPDNAPQLKELAIDRLSIAAMVLASADPAVDAGWVDSAGLTVLHRVAEALDLPYLALLLEERQKSQERRDQILLNERCLLKGWTPLHYAAAEGSPAAVSTLLAVGASVNVDGAVLDGIECNSNGGRNGXXXXXXXXXXXXXXXXXSDAGTALQLVRALLSKEGVGTRKKGLQEVARQLSAATQAAERAK 699
C F+ +VRLMLGTGLI+CTERERENG+SGASLLHSCVTDFAGSPDNAPQLKELAIDRLSIAAM+LAS DPAVDAGWVDS GLTVLHRVAEALDLPYLALLLEERQKSQERRDQILL+ERCLLKGWTPLHYAAAEGSP VSTLL GASV+V GAVLDGIE +S+ G XXXXXXXX GTALQL RALLSKEG G RKKGLQEVARQLSAATQA ERAK
Sbjct: 317 CRAGFVEEVRLMLGTGLIRCTERERENGSSGASLLHSCVTDFAGSPDNAPQLKELAIDRLSIAAMILASTDPAVDAGWVDSVGLTVLHRVAEALDLPYLALLLEERQKSQERRDQILLDERCLLKGWTPLHYAAAEGSPVGVSTLLTAGASVSVRGAVLDGIEPSSSNGA-----------XXXXXXXXXXGGTALQLARALLSKEGAGPRKKGLQEVARQLSAATQAVERAK 538
BLAST of mRNA_H-canaliculatus_F_contig13458.2809.1 vs. uniprot
Match: A0A6H5K1P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P9_9PHAE) HSP 1 Score: 250 bits (639), Expect = 2.170e-71 Identity = 184/281 (65.48%), Postives = 192/281 (68.33%), Query Frame = 1
Query: 1 CPLFFIVQVRLMLGTGLIKCTERERENGTSGASLLHSCVTDFAGSPDNAPQLKELAIDRLSIAAMVLASADPAVDAGWVDSAGLTVLHRVAEALDLPYLALLLEERQKSQERRDQILLNERCLLKGWTPLHYAAAEGSPAAVSTLLAVGASVNVDGAVLDGIECNSNGGRNGXXXXXXXXXXXXXXXXXSDAGTALQLVRALLSKEGVGTRKKGLQEVARQLSAATQAAERAKXXXXXXXXXXXXXXKRSEVQKXXXXXARERELLSRKQRQLKDKQERQE 843
C F+ +VRLMLGTGLI+CTERERENGTSGASLLHSCVTDFAGSPDNAPQLKELA+DRLSIAA ILL+ERCLLKGWTPLHYAAAEGSP VSTLLA GASV+V GAVLDGIE +S+ G XXXXXXXX GTALQL RALLSKEG G RKKGLQEVARQLSAATQA ERAK XXXXXXXXXXXKRSEV XXXXX RELLSRKQRQLKDKQER E
Sbjct: 367 CRAGFVEEVRLMLGTGLIRCTERERENGTSGASLLHSCVTDFAGSPDNAPQLKELAVDRLSIAA---------------------------------------------------ILLDERCLLKGWTPLHYAAAEGSPVCVSTLLAAGASVSVRGAVLDGIEPSSSNGA-----------XXXXXXXXXXGGTALQLARALLSKEGAGPRKKGLQEVARQLSAATQAVERAKEQRXXXXXXXXXXXKRSEVXXXXXXXXXXRELLSRKQRQLKDKQERLE 585
BLAST of mRNA_H-canaliculatus_F_contig13458.2809.1 vs. uniprot
Match: A0A836CBZ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBZ1_9STRA) HSP 1 Score: 127 bits (319), Expect = 8.310e-29 Identity = 104/262 (39.69%), Postives = 130/262 (49.62%), Query Frame = 1
Query: 64 ERERENGTSGASLLHSCVTDFAGSPDNAPQLKELAI-DRLSIAAMVLA--SADPAVDAGWVDSAGLTVLHRVAEALDLPYLALLLEERQKSQERR--DQILLNERCLLKGWTPLHYAAAEGSPAAVSTLLAVGASVNVDGAVLDGIECNSNGGRNGXXXXXXXXXXXXXXXXXSDAG-TALQLVRALLSKEGVGTRKKG--LQEVARQLSAATQAAERAKXXXXXXXXXXXXXXKRSEVQKXXXXXARERELLSRKQRQLKD 825
ERE E G SG SLLH+CVT A + RL IA ++LA ++ AVD VD GLTVLHR AEA D+P L LL +R +SQ QILLNERCL +GWTPLHYAA+ GS V+ LL GA V A SD G T L LV+ L+ ++G G RK G L EV R L +A + AERA+ X + E ++ ER LL++KQ QL++
Sbjct: 421 EREHEGGKSGPSLLHACVTTEALRKEGGDXXXXXXXAGRLEIAKLLLAWEASAAAVDVACVDEDGLTVLHRAAEACDVPLLRALLADRGESQRPAVTPQILLNERCLARGWTPLHYAASRGSTEGVTVLLGKGAPVGAHAA---------------------------PPKAPSDKGATPLDLVKQLVQRQGGGRRKGGGSLTEVERVLRSALKEAERAREEREQRERCAREXAQAQEDRRLRDRQRLERALLAKKQAQLRE 655
BLAST of mRNA_H-canaliculatus_F_contig13458.2809.1 vs. uniprot
Match: A0A7S1UAS6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAS6_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 3.900e-9 Identity = 56/173 (32.37%), Postives = 79/173 (45.66%), Query Frame = 1
Query: 52 IKCTERERENGTSGASLLHSCVTDFAGSPDNAPQLKELAI--------------------DRLSIAAMVLASADPAVDAGWVDSAGLTVLHRVAEALDLPYLALLLE----------------ERQKSQERRDQILLNERCLLKGWTPLHYAAAEGSPAAVSTLLAVGASVNV 462
++ +ERERE G SGA+LLH+CV+ S A + A +R +AA +L + +D G D G TVLHR A A D +L LLL+ +++K+ + LN +CL +GWT LHY+ A G LLA GA V +
Sbjct: 186 LRPSERERERGKSGATLLHACVSVNLPSAGAANAVLPKAAQXXXXXXVGGSSGKAVNRPAERRKVAAFLLTQEE--LDVGAYDEDGCTVLHR-ASASDPLFLQLLLKTVLGVQIGDDGEASKTKKKKASAAHAALDLNNKCLSRGWTALHYSVAAGLAGNCRLLLAAGARVRI 355
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 340.1 |
| Seed ortholog evalue | 1.1e-90 |
| Seed eggNOG ortholog | 2880.D8LMX5 |
| EggNOG free text desc. | protein folding |
| EggNOG OGs | COG0484@1,KOG0714@2759 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Heat shock protein 40 like protein/ DnaJ domain containing protein |
| Ec32 ortholog | Ec-02_004010.1 |
| Exons | 5 |
| Model size | 975 |
| Cds size | 975 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929085.6542013-CDS-H-canaliculatus_F_contig13458:155..299 | 1622929085.6542013-CDS-H-canaliculatus_F_contig13458:155..299 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13458 156..299 - |
| 1696845673.869818-CDS-H-canaliculatus_F_contig13458:155..299 | 1696845673.869818-CDS-H-canaliculatus_F_contig13458:155..299 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13458 156..299 - |
| 1622929085.6730719-CDS-H-canaliculatus_F_contig13458:704..803 | 1622929085.6730719-CDS-H-canaliculatus_F_contig13458:704..803 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13458 705..803 - |
| 1696845673.881095-CDS-H-canaliculatus_F_contig13458:704..803 | 1696845673.881095-CDS-H-canaliculatus_F_contig13458:704..803 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13458 705..803 - |
| 1622929085.6927488-CDS-H-canaliculatus_F_contig13458:1381..1782 | 1622929085.6927488-CDS-H-canaliculatus_F_contig13458:1381..1782 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13458 1382..1782 - |
| 1696845673.892541-CDS-H-canaliculatus_F_contig13458:1381..1782 | 1696845673.892541-CDS-H-canaliculatus_F_contig13458:1381..1782 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13458 1382..1782 - |
| 1622929085.7168105-CDS-H-canaliculatus_F_contig13458:2139..2278 | 1622929085.7168105-CDS-H-canaliculatus_F_contig13458:2139..2278 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13458 2140..2278 - |
| 1696845673.904002-CDS-H-canaliculatus_F_contig13458:2139..2278 | 1696845673.904002-CDS-H-canaliculatus_F_contig13458:2139..2278 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13458 2140..2278 - |
| 1622929085.7337928-CDS-H-canaliculatus_F_contig13458:2828..3020 | 1622929085.7337928-CDS-H-canaliculatus_F_contig13458:2828..3020 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13458 2829..3020 - |
| 1696845673.9604108-CDS-H-canaliculatus_F_contig13458:2828..3020 | 1696845673.9604108-CDS-H-canaliculatus_F_contig13458:2828..3020 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13458 2829..3020 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig13458.2809.1 >prot_H-canaliculatus_F_contig13458.2809.1 ID=prot_H-canaliculatus_F_contig13458.2809.1|Name=mRNA_H-canaliculatus_F_contig13458.2809.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=325bp
CPLFFIVQVRLMLGTGLIKCTERERENGTSGASLLHSCVTDFAGSPDNAP QLKELAIDRLSIAAMVLASADPAVDAGWVDSAGLTVLHRVAEALDLPYLA LLLEERQKSQERRDQILLNERCLLKGWTPLHYAAAEGSPAAVSTLLAVGA SVNVDGAVLDGIECNSNGGRNGGGGGGDGGDGGAGGGSGSDAGTALQLVR ALLSKEGVGTRKKGLQEVARQLSAATQAAERAKEQRERKEREAKLAKKRS EVQKEKKKEARERELLSRKQRQLKDKQERQEREERQEEERRGRTEEQGRA EEGGGKSSKKGKKSKKKKNGAGNKT back to topmRNA from alignment at H-canaliculatus_F_contig13458:156..3020- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig13458.2809.1 ID=mRNA_H-canaliculatus_F_contig13458.2809.1|Name=mRNA_H-canaliculatus_F_contig13458.2809.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2865bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13458:156..3020- (Hapterophycus canaliculatus Oshoro5f female) TGTCCGCTTTTTTTTATCGTCCAGGTGCGACTGATGTTAGGGACAGGGCT
CATCAAGTGCACGGAGCGAGAAAGGGAGAACGGCACATCGGGCGCGTCCC
TTCTGCACTCGTGCGTCACGGACTTCGCCGGCAGCCCCGACAACGCTCCG
CAGCTCAAGGAGCTGGCCATCGATCGCCTGAGCATCGCGGCGGTGACAAT
TTGGTTGTTGTTGTTGTTGTTGTTGTTTTTGTTTTTGCATGTCAAGGGAG
GGGTGGCAGTCGTGAGTCTTTCGACAAAGAGGCAGATATTACATCGCAAG
AAAACGATCTTCTAGTTGTTTTTTAGTGTTTTCGTTGCCTGGCCGGGCTG
CTGTTTGGGGTGGCTCTCTTGCCTCTCCGGCCTCACGCTTCCCGGCTGCG
CTCTGGTGCGGTGATAGCCAGGCCTGTTTTTCTCTCGTCTCGTTTTCCGT
GCCAGGCTGTAGTTCGTTCGGCCGTTCCGTCTCTCCTTGCTTGCGCTCTC
TCCCCTCTGCTGCGTCGGCGTTCGGCCCGAGTGTCGAGGTAAGCCTTTCG
TGTCCGGTCGATTAGTCACCGCTCGCCCGCACGCCTTGCCTTGCCCTTGC
CTTGCCGGGTGGTTTTTCCTACACAAACCGATAGCACCATTCGGTAACTT
CTCGCTCGCGCGGTCTTACCTCCACCCCCCTCTCGCTCTCGTGCCCCCCC
CCCCCCTCCCCTTCGCTCTCGCCGCCGTCCTTGTCTCGTTAGATGGTCTT
GGCGAGCGCGGACCCTGCGGTCGACGCGGGATGGGTAGATTCAGCGGGGC
TTACGGTCCTTCACAGGGTGGCGGAGGCTCTGGATCTCCCGTACCTGGCG
CTTTTGCTTGAGGAAAGGCAGAAGTCGCAAGGTGAACACACACACACACA
CGCACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACGGAAAAGCCCGGAAGCTCGACACTCGTGCGCCCGCGGCGGC
AGTATCCTCCACGATGCCGTGTTTTCGTCTTTCTAGATGGCTCTCGTTGG
ACTCTAGTTGAAAACAGCGGCCACATTCGCGTTGCCCAGACGAAGGTTTA
TCGGGTGTGGTTCATCGCGAACGTAGGGCTACCGCGCCCTCGCTTCAGGG
CAGCAACGGTGTATCTCCTTTTTTCCTTGACCTTGACGATGTCTACCTCA
AAAATTGTGTCCATGTACGTGTGTACGATCACCCGCAGAGCGAAGAGACC
AGATCTTGTTGAACGAGAGGTGCCTGCTCAAAGGCTGGACGCCGCTGCAC
TACGCCGCTGCGGAAGGAAGCCCGGCGGCCGTCTCCACCCTGCTTGCCGT
CGGCGCGAGCGTGAACGTCGACGGTGCCGTTCTCGACGGCATCGAGTGCA
ACTCCAACGGAGGCAGGAACGGTGGGGGTGGGGGCGGGGATGGGGGAGAT
GGTGGGGCCGGCGGCGGCAGCGGCAGCGATGCGGGCACCGCTCTCCAGCT
GGTGAGGGCCCTGCTTTCGAAGGAAGGTGTGGGCACCCGGAAGAAGGGGC
TGCAGGAGGTGGCGAGGCAGCTTAGCGCGGCCACGCAGGCGGCGGAGCGG
GCGAAGGAGCAGCGGGAGCGCAAGGAGCGAGAGGCCAAGGTGAAAGAGAC
AAAAGGCGGGGACAGGGATAGAAGCGGGGATAGGGACGGAGTCGAAAGGG
ACAGAGAGAGAAAAAGAGACGGGGGCGGGGAGAATCAGCCATTGGTCGAG
ATATGGGGGCGGACAAAGGAAGTTGAGGGGTAACGGGGTGTGCGCTCTTC
GTTAGTCGGAGAGAGAAATAGCATTTTTTTCTTTGTTCTTTTTTCGTTTC
CCGTCTCGTTTGGGTGTGGCTTGGGATGCCTCTGTCGTCTGCTTGCATAA
TACACTCCACGTCTTTGATGATCACGAAGGAGTGGCGGACGGGATAGATC
ATGACGGACGACGTTCCAGGAAAAGCTGCGGTGTCACACGAACCTCTTCT
GCACATTTTTATTTTCGCACCGTCTGGCAGCGGGGGAACCCATTCGCGTC
TCCATGCTTTGCTCTTCGTTCTTGCACGGAGCGCGGGGCGGAGGTGGGGT
GCAGGCGAAAGGCCCGTTCGCACCCCATCGCCGCACACGAAACGTACGAT
TGAACCAATAATCCAATCCGCCGATCGACCGACGGACCGATGCTTACATC
GACCACTGAAAAAACAGCTGGCGAAGAAGCGATCGGAGGTGCAGAAGGAG
AAGAAGAAGGAGGCCAGGGAGAGAGAGCTACTCTCCCGAAAGCAGCGCCA
ACTCAAGGACAAGCAGGTGAGAGGGGGCGTGCTTGCAGCGCAGCGCAGCG
CAAGAGCAGCTGGTGTGCTCGCGCACGATGCGGGATACGATTCGTTGAGT
GGTGTGGAGCGCGATGCGCCGAATTTTCTCTTGTTGTTTCGTGGCTGGCG
TGATGGGTGTTGGTGCGGCGCAACTTTGCTACCGTACGCGCCGTGCGGGT
AGAACGTTCCCCACTCCGTCCTGCGAGCGGGAGCGGAGCCTCGCCCGTCC
GTTTTTTTTTTTTGCAACGCTAGAGGCGTGTCCTTACCGCCGGCCGCCGC
GACACTGTCGACGGACTGCCGTCTGCCCACCGCCGTCTTCCCCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCCCGTACGGTGGCGCATGCT
CCGTGGTCTCGTCTGGACCAGGAGCGGCAGGAGCGAGAGGAGCGGCAGGA
GGAGGAGAGGAGAGGGCGCACGGAGGAGCAAGGGAGGGCGGAGGAGGGGG
GAGGCAAGTCCTCCAAGAAGGGCAAGAAGTCGAAGAAGAAGAAGAACGGG
GCAGGGAACAAGACA back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig13458:156..3020- >mRNA_H-canaliculatus_F_contig13458.2809.1 ID=mRNA_H-canaliculatus_F_contig13458.2809.1|Name=mRNA_H-canaliculatus_F_contig13458.2809.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1950bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13458:156..3020- (Hapterophycus canaliculatus Oshoro5f female) TGTCCGCTTTTTTTTATCGTCCAGGTGCGACTGATGTTAGGGACAGGGCT CATCAAGTGCACGGAGCGAGAAAGGGAGAACGGCACATCGGGCGCGTCCC TTCTGCACTCGTGCGTCACGGACTTCGCCGGCAGCCCCGACAACGCTCCG CAGCTCAAGGAGCTGGCCATCGATCGCCTGAGCATCGCGGCGTGTCCGCT TTTTTTTATCGTCCAGGTGCGACTGATGTTAGGGACAGGGCTCATCAAGT GCACGGAGCGAGAAAGGGAGAACGGCACATCGGGCGCGTCCCTTCTGCAC TCGTGCGTCACGGACTTCGCCGGCAGCCCCGACAACGCTCCGCAGCTCAA GGAGCTGGCCATCGATCGCCTGAGCATCGCGGCGATGGTCTTGGCGAGCG CGGACCCTGCGGTCGACGCGGGATGGGTAGATTCAGCGGGGCTTACGGTC CTTCACAGGGTGGCGGAGGCTCTGGATCTCCCGTACCTGGCGCTTTTGCT TGAGGAAAGGCAGAAGTCGCAAGATGGTCTTGGCGAGCGCGGACCCTGCG GTCGACGCGGGATGGGTAGATTCAGCGGGGCTTACGGTCCTTCACAGGGT GGCGGAGGCTCTGGATCTCCCGTACCTGGCGCTTTTGCTTGAGGAAAGGC AGAAGTCGCAAGAGCGAAGAGACCAGATCTTGTTGAACGAGAGGTGCCTG CTCAAAGGCTGGACGCCGCTGCACTACGCCGCTGCGGAAGGAAGCCCGGC GGCCGTCTCCACCCTGCTTGCCGTCGGCGCGAGCGTGAACGTCGACGGTG CCGTTCTCGACGGCATCGAGTGCAACTCCAACGGAGGCAGGAACGGTGGG GGTGGGGGCGGGGATGGGGGAGATGGTGGGGCCGGCGGCGGCAGCGGCAG CGATGCGGGCACCGCTCTCCAGCTGGTGAGGGCCCTGCTTTCGAAGGAAG GTGTGGGCACCCGGAAGAAGGGGCTGCAGGAGGTGGCGAGGCAGCTTAGC GCGGCCACGCAGGCGGCGGAGCGGGCGAAGGAGCAGCGGGAGCGCAAGGA GCGAGAGGCCAAGAGCGAAGAGACCAGATCTTGTTGAACGAGAGGTGCCT GCTCAAAGGCTGGACGCCGCTGCACTACGCCGCTGCGGAAGGAAGCCCGG CGGCCGTCTCCACCCTGCTTGCCGTCGGCGCGAGCGTGAACGTCGACGGT GCCGTTCTCGACGGCATCGAGTGCAACTCCAACGGAGGCAGGAACGGTGG GGGTGGGGGCGGGGATGGGGGAGATGGTGGGGCCGGCGGCGGCAGCGGCA GCGATGCGGGCACCGCTCTCCAGCTGGTGAGGGCCCTGCTTTCGAAGGAA GGTGTGGGCACCCGGAAGAAGGGGCTGCAGGAGGTGGCGAGGCAGCTTAG CGCGGCCACGCAGGCGGCGGAGCGGGCGAAGGAGCAGCGGGAGCGCAAGG AGCGAGAGGCCAAGCTGGCGAAGAAGCGATCGGAGGTGCAGAAGGAGAAG AAGAAGGAGGCCAGGGAGAGAGAGCTACTCTCCCGAAAGCAGCGCCAACT CAAGGACAAGCAGCTGGCGAAGAAGCGATCGGAGGTGCAGAAGGAGAAGA AGAAGGAGGCCAGGGAGAGAGAGCTACTCTCCCGAAAGCAGCGCCAACTC AAGGACAAGCAGGAGCGGCAGGAGCGAGAGGAGCGGCAGGAGGAGGAGAG GAGAGGGCGCACGGAGGAGCAAGGGAGGGCGGAGGAGGGGGGAGGCAAGT CCTCCAAGAAGGGCAAGAAGTCGAAGAAGAAGAAGAACGGGGCAGGGAAC AAGACAGAGCGGCAGGAGCGAGAGGAGCGGCAGGAGGAGGAGAGGAGAGG GCGCACGGAGGAGCAAGGGAGGGCGGAGGAGGGGGGAGGCAAGTCCTCCA AGAAGGGCAAGAAGTCGAAGAAGAAGAAGAACGGGGCAGGGAACAAGACA back to top
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