mRNA_H-canaliculatus_F_contig13447.2801.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13447.2801.1
Unique NamemRNA_H-canaliculatus_F_contig13447.2801.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13447.2801.1 vs. uniprot
Match: D8LE62_ECTSI (GPI inositol-deacylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE62_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 3.000e-34
Identity = 54/66 (81.82%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 CGKCLHADGGIGAIFVETNKDRVSIGAGVTLGPGFRVVACDCPQREPAAPSSWCEFCRCVCKVCGG 198
            CGKCLHADGG GA++VET++DRV +G GV+LGPGFRVVACDCPQREPA+PS+WCEFCRCVCK CGG
Sbjct:  887 CGKCLHADGGEGAVYVETDRDRVRVGPGVSLGPGFRVVACDCPQREPASPSTWCEFCRCVCKFCGG 952
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BLAST of mRNA_H-canaliculatus_F_contig13447.2801.1 vs. uniprot
Match: A0A024FUU9_9STRA (GPI inositol-deacylase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FUU9_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.010e-11
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:    1 CGKCLHADGGIGAIFVETNKDRVSIG---AGVTLGPGFRVVACDCPQREPAAPSSWCEFCRCVCKVCGG 198
            C  C+  DGG GAI+VE    + +     + + LGP F+VVACDC  R    PS  C+FCR VC++CGG
Sbjct:  713 CPHCVFEDGGDGAIYVECEVSKYANSKTTSDIWLGPTFKVVACDCFHRYRNEPSLHCDFCRRVCRLCGG 781
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BLAST of mRNA_H-canaliculatus_F_contig13447.2801.1 vs. uniprot
Match: A0A6G0XTR4_9STRA (GPI inositol-deacylase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTR4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.020e-10
Identity = 35/72 (48.61%), Postives = 40/72 (55.56%), Query Frame = 1 
Query:    1 CGKCLHADGGIGAIFVETNKDRVS-IGAGVTLGPGFRVVACDC-----PQREPAAPSSWCEFCRCVCKVCGG 198
            C +C   DGG+GAIFV+        +  GVTLGP FRVVACDC     P RE      +C FCR  C  CGG
Sbjct:  628 CTECFVEDGGVGAIFVQAETPATKHMRGGVTLGPTFRVVACDCGLRNIPHRE------YCAFCRRTCSSCGG 693
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13447.2801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LE62_ECTSI3.000e-3481.82GPI inositol-deacylase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A024FUU9_9STRA4.010e-1146.38GPI inositol-deacylase n=1 Tax=Albugo candida TaxI... [more]
A0A6G0XTR4_9STRA1.020e-1048.61GPI inositol-deacylase n=1 Tax=Aphanomyces euteich... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13447contigH-canaliculatus_F_contig13447:1593..1790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue7.2e-29
Seed eggNOG ortholog2880.D8LE62
KEGG koko:K03263,ko:K05294
KEGG Pathwayko00563,ko01100,map00563,map01100
EggNOG free text desc.phosphatidylinositol deacylase activity
EggNOG OGsKOG3724@1,KOG3724@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03012
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGPI inositol-deacylase PGAP1-like
Ec32 orthologEc-00_001080.1
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929084.4884856-CDS-H-canaliculatus_F_contig13447:1592..17901622929084.4884856-CDS-H-canaliculatus_F_contig13447:1592..1790Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13447 1593..1790 -
1696845673.478064-CDS-H-canaliculatus_F_contig13447:1592..17901696845673.478064-CDS-H-canaliculatus_F_contig13447:1592..1790Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13447 1593..1790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13447.2801.1prot_H-canaliculatus_F_contig13447.2801.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13447 1593..1790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13447.2801.1

>prot_H-canaliculatus_F_contig13447.2801.1 ID=prot_H-canaliculatus_F_contig13447.2801.1|Name=mRNA_H-canaliculatus_F_contig13447.2801.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=66bp
CGKCLHADGGIGAIFVETNKDRVSIGAGVTLGPGFRVVACDCPQREPAAP
SSWCEFCRCVCKVCGG
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mRNA from alignment at H-canaliculatus_F_contig13447:1593..1790-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13447.2801.1 ID=mRNA_H-canaliculatus_F_contig13447.2801.1|Name=mRNA_H-canaliculatus_F_contig13447.2801.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=198bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13447:1593..1790- (Hapterophycus canaliculatus Oshoro5f female)
TGCGGAAAGTGCCTGCACGCCGACGGCGGAATCGGCGCGATCTTTGTTGA
GACGAACAAGGATCGAGTGTCGATCGGGGCTGGGGTGACCCTCGGCCCCG
GGTTTCGAGTGGTAGCTTGTGACTGCCCTCAGAGAGAGCCAGCTGCCCCC
TCCAGCTGGTGCGAGTTCTGCCGCTGTGTCTGTAAGGTGTGCGGGGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13447:1593..1790-

>mRNA_H-canaliculatus_F_contig13447.2801.1 ID=mRNA_H-canaliculatus_F_contig13447.2801.1|Name=mRNA_H-canaliculatus_F_contig13447.2801.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=396bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13447:1593..1790- (Hapterophycus canaliculatus Oshoro5f female)
TGCGGAAAGTGCCTGCACGCCGACGGCGGAATCGGCGCGATCTTTGTTGA
GACGAACAAGGATCGAGTGTCGATCGGGGCTGGGGTGACCCTCGGCCCCG
GGTTTCGAGTGGTAGCTTGTGACTGCCCTCAGAGAGAGCCAGCTGCCCCC
TCCAGCTGGTGCGAGTTCTGCCGCTGTGTCTGTAAGGTGTGCGGGGGCTG
CGGAAAGTGCCTGCACGCCGACGGCGGAATCGGCGCGATCTTTGTTGAGA
CGAACAAGGATCGAGTGTCGATCGGGGCTGGGGTGACCCTCGGCCCCGGG
TTTCGAGTGGTAGCTTGTGACTGCCCTCAGAGAGAGCCAGCTGCCCCCTC
CAGCTGGTGCGAGTTCTGCCGCTGTGTCTGTAAGGTGTGCGGGGGC
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