mRNA_H-canaliculatus_F_contig100.27.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig100.27.1
Unique NamemRNA_H-canaliculatus_F_contig100.27.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Match: D7FQ38_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ38_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 5.810e-67
Identity = 100/104 (96.15%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:  145 MADDEQAATEAQESVTERKIEILIAEIPEDLQQKAKRRVCLAMDKYEIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 456
            MADDEQAA+EAQESVTERKIE+LIAEIPE+LQQKAKRRVCLAMDKY+IEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE
Sbjct:    1 MADDEQAASEAQESVTERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 104
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BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Match: A0A7S2UW34_9STRA (Dynein light chain n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW34_9STRA)

HSP 1 Score: 103 bits (258), Expect = 4.730e-26
Identity = 53/91 (58.24%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:  196 RKIEILIAEIPE----DLQQKAKRRVCLAMDKYEIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 456
            RK+ IL AE PE    DLQ+ A R+V  ++ K+ I KD+AT+VK+HFDE+  G+WHCV GR+FGCSVT+ET++L FFK +Q FVLLF S E
Sbjct:   15 RKVVILRAEFPEVKGEDLQEDAIRKVDESLTKHTISKDVATEVKRHFDEKYGGTWHCVVGRNFGCSVTNETRYLLFFKIEQTFVLLFKSQE 105
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BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Match: A0A7S2RLM3_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLM3_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.160e-25
Identity = 48/79 (60.76%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:  220 EIPEDLQQKAKRRVCLAMDKYEIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 456
            +IPE++ +KA  +   AMD++ IEKDIAT +K  FD++  G+WHCV+GRSFGCSVTHETK+L FF+ DQ +VLLFCS E
Sbjct:   20 DIPEEMCRKAIGKANEAMDQHTIEKDIATAIKTSFDKDYGGTWHCVAGRSFGCSVTHETKYLVFFQLDQTYVLLFCSDE 98
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BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Match: A0A7S1U8R4_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8R4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 8.360e-23
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:  193 ERKIEILIAEIPEDLQQKAKRRVCLAMDKYEIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQM 429
            ER + +L AE+PEDL+ KA      A+D +E+EKD+A  VKK FDE   G+WHCV GR+FGCS+THETK+L FFK DQ+
Sbjct:   10 ERVLRVLKAEMPEDLKTKAAEVGNQALDAHEVEKDVAQFVKKAFDEASPGTWHCVVGRNFGCSITHETKYLIFFKLDQV 88
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BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Match: A0A835YLR1_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR1_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.500e-22
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:  220 EIPEDLQQKAKRRVCLAMDKYEIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFK 417
            +IPE LQ+KA  RV   + +  + KDIA+D+KKHFD+EC G+WHCV GRSFGCSVTHETK+L FF+
Sbjct:   10 DIPEALQKKAIERVVEVLQRVAVAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFR 75
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BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Match: A0A7S2CC43_9STRA (Dynein light chain n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CC43_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 8.150e-22
Identity = 45/102 (44.12%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:  145 MADDEQAATEAQESVTERKIEILIAEIPEDLQQKAKRRVCLAMDKYEIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 450
            MADD       ++ V+ RK+ +     P ++ + A  ++  A+DK+ IEKD+AT VK  FD++  G+WHC+ G+SFGCS+THETK+L + + D +F LLFCS
Sbjct:    1 MADDSDEEEVGKKKVSTRKVHLHQVLAPNNMCELAVEKLDEAIDKHTIEKDMATAVKTTFDKDYGGTWHCIVGKSFGCSITHETKYLMYIQVDHLFCLLFCS 102
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BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Match: H3BFR6_LATCH (Dynein light chain n=6 Tax=Eukaryota TaxID=2759 RepID=H3BFR6_LATCH)

HSP 1 Score: 89.4 bits (220), Expect = 3.410e-20
Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:  178 QESVTERKIEILIAEIPEDLQQKAKRRVCLAMDKYEIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 450
            Q +++ERK  I  A++PED+QQ A      A++KY IEKDIA  +KK FD++   +WHC+ GR+FG  VTHETKH  +F   Q+ +LLF S
Sbjct:   24 QANMSERKAVIKNADMPEDMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 114
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BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Match: A0A448WG77_9PLAT (Dynein light chain n=2 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A448WG77_9PLAT)

HSP 1 Score: 88.2 bits (217), Expect = 4.990e-20
Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:  196 RKIEILIAEIPEDLQQKAKRRVCLAMDKYEIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 450
            RK  I  A++PED+Q +A R    AMDKY IEKDIA  +KK FD+    +WHC+ GR+FG  VTHETKH  +F   Q+ VLLF S
Sbjct:    6 RKAVIKNADMPEDMQAEAVRCCADAMDKYNIEKDIAAYLKKEFDKRYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKS 90
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BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Match: UPI001B88DF89 (dynein light chain 2, cytoplasmic-like isoform X2 n=3 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88DF89)

HSP 1 Score: 89.0 bits (219), Expect = 7.600e-20
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:  184 SVTERKIEILIAEIPEDLQQKAKRRVCLAMDKYEIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 450
            ++TERK  +  A++ ED+QQ+A      AM+KY IEKDIA  +KK FD++   +WHCV GR+FG  VTHETKH  +F   Q+ VLLF S
Sbjct:   43 NMTERKAVVKNADMNEDMQQEAVDCATQAMEKYNIEKDIAAFIKKEFDKKYNPTWHCVVGRNFGSYVTHETKHFIYFYLGQVAVLLFKS 131
[Close]
BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Match: A0A7J6CV12_9TELE (Dynein light chain n=2 Tax=Cyprinoidei TaxID=30727 RepID=A0A7J6CV12_9TELE)

HSP 1 Score: 89.0 bits (219), Expect = 8.670e-20
Identity = 45/98 (45.92%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:  157 EQAATEAQESVTERKIEILIAEIPEDLQQKAKRRVCLAMDKYEIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 450
            +Q  TE + S+++RK  I  A++ E++QQ A      A++KY IEKDIA  +KK FD++   +WHC+ GR+FG  VTHETKH  +F   Q+ +LLF S
Sbjct:   39 QQICTEIRSSMSDRKAVIKNADMSEEMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ38_ECTSI5.810e-6796.15Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S2UW34_9STRA4.730e-2658.24Dynein light chain n=1 Tax=Fibrocapsa japonica Tax... [more]
A0A7S2RLM3_9STRA1.160e-2560.76Dynein light chain n=1 Tax=Rhizochromulina marina ... [more]
A0A7S1U8R4_9STRA8.360e-2358.23Dynein light chain n=1 Tax=Phaeomonas parva TaxID=... [more]
A0A835YLR1_9STRA2.500e-2263.64Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2CC43_9STRA8.150e-2244.12Dynein light chain n=1 Tax=Dictyocha speculum TaxI... [more]
H3BFR6_LATCH3.410e-2049.45Dynein light chain n=6 Tax=Eukaryota TaxID=2759 Re... [more]
A0A448WG77_9PLAT4.990e-2054.12Dynein light chain n=2 Tax=Protopolystoma xenopodi... [more]
UPI001B88DF897.600e-2051.69dynein light chain 2, cytoplasmic-like isoform X2 ... [more]
A0A7J6CV12_9TELE8.670e-2045.92Dynein light chain n=2 Tax=Cyprinoidei TaxID=30727... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig100contigH-canaliculatus_F_contig100:42833..44376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.5
Seed ortholog evalue1.1e-51
Seed eggNOG ortholog2880.D7FQ38
KEGG koko:K10418
KEGG Pathwayko04962,map04962
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDynein light chain
Ec32 orthologEc-01_007600.1
Exons4
Model size461
Cds size459
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig100.27.1prot_H-canaliculatus_F_contig100.27.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig100 42833..44376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928627.8501067-CDS-H-canaliculatus_F_contig100:42832..429211622928627.8501067-CDS-H-canaliculatus_F_contig100:42832..42921Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig100 42833..42921 +
1696845500.825329-CDS-H-canaliculatus_F_contig100:42832..429211696845500.825329-CDS-H-canaliculatus_F_contig100:42832..42921Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig100 42833..42921 +
1622928627.8629503-CDS-H-canaliculatus_F_contig100:43421..435331622928627.8629503-CDS-H-canaliculatus_F_contig100:43421..43533Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig100 43422..43533 +
1696845500.838312-CDS-H-canaliculatus_F_contig100:43421..435331696845500.838312-CDS-H-canaliculatus_F_contig100:43421..43533Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig100 43422..43533 +
1622928627.8740537-CDS-H-canaliculatus_F_contig100:43730..438861622928627.8740537-CDS-H-canaliculatus_F_contig100:43730..43886Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig100 43731..43886 +
1696845500.849835-CDS-H-canaliculatus_F_contig100:43730..438861696845500.849835-CDS-H-canaliculatus_F_contig100:43730..43886Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig100 43731..43886 +
1622928627.8872685-CDS-H-canaliculatus_F_contig100:44274..443761622928627.8872685-CDS-H-canaliculatus_F_contig100:44274..44376Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig100 44275..44376 +
1696845500.8614864-CDS-H-canaliculatus_F_contig100:44274..443761696845500.8614864-CDS-H-canaliculatus_F_contig100:44274..44376Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig100 44275..44376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig100.27.1

>prot_H-canaliculatus_F_contig100.27.1 ID=prot_H-canaliculatus_F_contig100.27.1|Name=mRNA_H-canaliculatus_F_contig100.27.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=153bp
EFWRIEQSGGLREDTATRKWSKNTCAENIRDREAKRVRRLELTRYTQAMA
DDEQAATEAQESVTERKIEILIAEIPEDLQQKAKRRVCLAMDKYEIEKDI
ATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS
PE*
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mRNA from alignment at H-canaliculatus_F_contig100:42833..44376+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig100.27.1 ID=mRNA_H-canaliculatus_F_contig100.27.1|Name=mRNA_H-canaliculatus_F_contig100.27.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1544bp|location=Sequence derived from alignment at H-canaliculatus_F_contig100:42833..44376+ (Hapterophycus canaliculatus Oshoro5f female)
GAATTTTGGAGAATAGAGCAATCCGGTGGGCTACGGGAAGATACCGCGAC
GCGGAAATGGTCAAAGAACACCTGCGCGGAAAACATTAGGTGTGTACCCA
GTATCACTGTTTATGAGACTTGTTCGATTACATGGCCGTCGTCGTCGAAC
ATGCTGCCGATAGTCTGGCTTTGTCTGACGAGAGTCGATCTTGGAGTTTG
AAATCCATTCAGATAGGTGCACATTCGAGCCCGGCCGCAGATGTACTGCT
GTGTTTCATATCCGACACTGCTCAGCTCTACATAGATGCACAGCGTCAAC
GCTTTTCACGCAAGGTGCTTTAAGTTCAAGTTCACGTGGAGTACCAGGAC
AGGGTTGCAGGAGGGAGAGGTACGTGTCCCGGTCTATTCATCAAGAGCAT
TCAACATCGAAGAGTGACAACTCTCCATATTGCAGCGCATCACTTCCTGC
GCATGCATGCGCCCGTGGGTGGCTTAGAGTATGTGTATATGCCGTAGTCT
GCCAAGATAATTAAAACGTAAACGTGTACCAGGTGACTTGACAAACTACA
GCATGCGCACTGCAAATCCTTGTCTCTGGTCTTGAGCAGAGATCGTGAAG
CGAAACGAGTTCGGAGGTTGGAACTCACGCGGTATACTCAGGCTATGGCG
GACGATGAGCAGGCCGCCACAGAGGCACAGGAATCAGTAACGGAAAGAAA
GGTGAGGAGACATGCACATATATACGATGTTCTCGGCATACGAAGATGAT
GCGAACAAAACCCTTTTTTTCCTACGCCATAGCGGGTTGCCCAGCCGAGT
CGTTGCCTGTCCATGAACAGGCTTACCACCGATGCACCTGGTCTCGGTGA
GGAACACGGTATATGCGCCGTTTCTCCCTGCGATTATCTGAATAACAGAT
TGAGATACTGATCGCGGAAATCCCTGAAGATCTCCAGCAGAAAGCGAAGC
GGCGAGTGTGCCTGGCGATGGACAAATACGAGATCGAGAAAGACATTGCT
ACAGATGTCAAGAAACACTTCGACGAAGAGTGTGAAGGCTCCTGGCATTG
TGTGGTGAGTGTGTGCCACCGTGGATCTGATTTCTACATGCCCCGTAGAA
AGGAGCGGATAATTTCCACACCGCACGAGGACATACGGAGGACATGCCGA
TGAGGTAGACGAAGATTCCTGGCATGCGAGGCACGGGCGGAGTGCATACG
GCAAGTGCGGTGCAGCGCTCTCCTCGTGAAAGGCTGATGCATCACTCTGC
AATGATACGTGTATCTACAGAGCGTGCTTCTTTTCCGACAACCGTTGGCG
ACCAGGTCTGTCAAGGGAAAGCCTCGTTGGAAGTTTCATTACGTTTTTCC
AATCCATGTCCTTTCCCCTCTGTCCGTCCCTCTCGGCATTCTTCCCTTGT
TCGCCACCGCCGCCGAACATCGTGCGGTTCTTCCTCCGCAAGTCGGGACG
GAGTTTTGGGTGCTCCGTGACCCACGAGACTAAACACCTGTTCTTCTTCA
AGTGTGACCAGATGTTCGTGCTACTTTTTTGTTCCCCCGAGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig100:42833..44376+

>mRNA_H-canaliculatus_F_contig100.27.1 ID=mRNA_H-canaliculatus_F_contig100.27.1|Name=mRNA_H-canaliculatus_F_contig100.27.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=918bp|location=Sequence derived from alignment at H-canaliculatus_F_contig100:42833..44376+ (Hapterophycus canaliculatus Oshoro5f female)
GAATTTTGGAGAATAGAGCAATCCGGTGGGCTACGGGAAGATACCGCGAC
GCGGAAATGGTCAAAGAACACCTGCGCGGAAAACATTAGGAATTTTGGAG
AATAGAGCAATCCGGTGGGCTACGGGAAGATACCGCGACGCGGAAATGGT
CAAAGAACACCTGCGCGGAAAACATTAGAGATCGTGAAGCGAAACGAGTT
CGGAGGTTGGAACTCACGCGGTATACTCAGGCTATGGCGGACGATGAGCA
GGCCGCCACAGAGGCACAGGAATCAGTAACGGAAAGAAAGAGATCGTGAA
GCGAAACGAGTTCGGAGGTTGGAACTCACGCGGTATACTCAGGCTATGGC
GGACGATGAGCAGGCCGCCACAGAGGCACAGGAATCAGTAACGGAAAGAA
AGATTGAGATACTGATCGCGGAAATCCCTGAAGATCTCCAGCAGAAAGCG
AAGCGGCGAGTGTGCCTGGCGATGGACAAATACGAGATCGAGAAAGACAT
TGCTACAGATGTCAAGAAACACTTCGACGAAGAGTGTGAAGGCTCCTGGC
ATTGTGTGATTGAGATACTGATCGCGGAAATCCCTGAAGATCTCCAGCAG
AAAGCGAAGCGGCGAGTGTGCCTGGCGATGGACAAATACGAGATCGAGAA
AGACATTGCTACAGATGTCAAGAAACACTTCGACGAAGAGTGTGAAGGCT
CCTGGCATTGTGTGTCGGGACGGAGTTTTGGGTGCTCCGTGACCCACGAG
ACTAAACACCTGTTCTTCTTCAAGTGTGACCAGATGTTCGTGCTACTTTT
TTGTTCCCCCGAGTGATCGGGACGGAGTTTTGGGTGCTCCGTGACCCACG
AGACTAAACACCTGTTCTTCTTCAAGTGTGACCAGATGTTCGTGCTACTT
TTTTGTTCCCCCGAGTGA
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