mRNA_H-canaliculatus_F_contig1344.2797.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1344.2797.1
Unique NamemRNA_H-canaliculatus_F_contig1344.2797.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1344.2797.1 vs. uniprot
Match: A0A7S3NNH9_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNH9_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.250e-8
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    7 IREKVHGPDHPAVAQSLDNRAGLLEKQGKHEEAGLLYLRIIEI 135
            I EK  GP+HP +A  L+N AGLLE QGK++EA LLY R IEI
Sbjct:    2 IGEKTLGPNHPDLATRLNNLAGLLENQGKYDEAKLLYERAIEI 44
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BLAST of mRNA_H-canaliculatus_F_contig1344.2797.1 vs. uniprot
Match: A0A7S3K3F8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3F8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.250e-8
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    7 IREKVHGPDHPAVAQSLDNRAGLLEKQGKHEEAGLLYLRIIEI 135
            I EK  GP+HP +A  L+N AGLLE QGK++EA LLY R IEI
Sbjct:    2 IGEKTLGPNHPDLATRLNNLAGLLENQGKYDEAKLLYERAIEI 44
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BLAST of mRNA_H-canaliculatus_F_contig1344.2797.1 vs. uniprot
Match: A0A6H5K0C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.770e-8
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    4 AIREKVHGPDHPAVAQSLDNRAGLLEKQGKHEEAGLLYLR 123
            AI+EKV GPDHP++A +L+NRAGLLE QGK+ EA  LY R
Sbjct:   84 AIKEKVLGPDHPSLATTLNNRAGLLEAQGKYVEAEPLYER 123
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BLAST of mRNA_H-canaliculatus_F_contig1344.2797.1 vs. uniprot
Match: A0A7S3NQ03_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NQ03_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 5.540e-8
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    7 IREKVHGPDHPAVAQSLDNRAGLLEKQGKHEEAGLLYLRIIEI 135
            I EK  GP+HP +A  L+N AGLLE QGK++EA LLY R IEI
Sbjct:    2 IGEKTLGPNHPDLATRLNNLAGLLENQGKYDEAKLLYERAIEI 44
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BLAST of mRNA_H-canaliculatus_F_contig1344.2797.1 vs. uniprot
Match: A0A7S3NN98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NN98_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 6.060e-8
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    7 IREKVHGPDHPAVAQSLDNRAGLLEKQGKHEEAGLLYLRIIEI 135
            I EK  GP+HP +A  L+N AGLLE QGK++EA LLY R IEI
Sbjct:    2 IGEKTLGPNHPDLATRLNNLAGLLENQGKYDEAKLLYERAIEI 44
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BLAST of mRNA_H-canaliculatus_F_contig1344.2797.1 vs. uniprot
Match: A0A1B7VCZ1_9NOST (Uncharacterized protein (Fragment) n=1 Tax=Anabaena sp. LE011-02 TaxID=1710892 RepID=A0A1B7VCZ1_9NOST)

HSP 1 Score: 50.1 bits (118), Expect = 7.280e-7
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   10 REKVHGPDHPAVAQSLDNRAGLLEKQGKHEEAGLLYLRIIEIGEKTLG 153
            R+K+ G DHP VA SL+N AGL   QGK+ EA  LY + + I E+ LG
Sbjct:    1 RQKLLGDDHPDVASSLNNLAGLYYSQGKYNEAEPLYQQALNIFEQRLG 48
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BLAST of mRNA_H-canaliculatus_F_contig1344.2797.1 vs. uniprot
Match: A0A1E3XCR1_9BACT (RDD domain-containing protein n=1 Tax=Candidatus Scalindua rubra TaxID=1872076 RepID=A0A1E3XCR1_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 1.050e-5
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    4 AIREKVHGPDHPAVAQSLDNRAGLLEKQGKHEEAGLLYLRII 129
            AI EKVHGPDHP VA+SL+  A L E + K++EA  LY R +
Sbjct:  205 AINEKVHGPDHPDVARSLNRLARLYESRRKYDEAQPLYNRAL 246
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BLAST of mRNA_H-canaliculatus_F_contig1344.2797.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 2.000e-5
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:    1 QAIREKVHGPDHPAVAQSLDNRAGLLEKQ 87
            Q IREKV GP+HP VAQSL+NRAGLLE Q
Sbjct:  512 QTIREKVLGPEHPDVAQSLNNRAGLLEAQ 540
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BLAST of mRNA_H-canaliculatus_F_contig1344.2797.1 vs. uniprot
Match: A0A212DBM0_CEREH (Kinesin light chain n=1 Tax=Cervus elaphus hippelaphus TaxID=46360 RepID=A0A212DBM0_CEREH)

HSP 1 Score: 49.3 bits (116), Expect = 2.000e-5
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    7 IREKVHGPDHPAVAQSLDNRAGLLEKQGKHEEAGLLYLRIIEIGEKTL 150
            IRE+  GP+HPAVA +L+N A L  K+G++ EA  L  R +EI EK L
Sbjct:  330 IREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVL 377
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BLAST of mRNA_H-canaliculatus_F_contig1344.2797.1 vs. uniprot
Match: A0A7S3NLU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLU4_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 2.770e-5
Identity = 24/33 (72.73%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   55 LDNRAGLLEKQGKHEEAGLLYLRIIEIGEKTLG 153
            L+N AGLLE QGK+ EA  LY R IEIGEKTLG
Sbjct:    2 LNNLAGLLESQGKYNEAKPLYERAIEIGEKTLG 34
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1344.2797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A7S3NNH9_9STRA2.250e-862.79Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S3K3F8_9STRA2.250e-862.79Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A6H5K0C4_9PHAE2.770e-867.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3NQ03_9STRA5.540e-862.79Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S3NN98_9STRA6.060e-862.79Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A1B7VCZ1_9NOST7.280e-752.08Uncharacterized protein (Fragment) n=1 Tax=Anabaen... [more]
A0A1E3XCR1_9BACT1.050e-557.14RDD domain-containing protein n=1 Tax=Candidatus S... [more]
A0A6H5KIY6_9PHAE2.000e-579.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A212DBM0_CEREH2.000e-552.08Kinesin light chain n=1 Tax=Cervus elaphus hippela... [more]
A0A7S3NLU4_9STRA2.770e-572.73Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1344contigH-canaliculatus_F_contig1344:4451..4716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929084.1913846-CDS-H-canaliculatus_F_contig1344:4450..45371622929084.1913846-CDS-H-canaliculatus_F_contig1344:4450..4537Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1344 4451..4537 +
1696845673.282653-CDS-H-canaliculatus_F_contig1344:4450..45371696845673.282653-CDS-H-canaliculatus_F_contig1344:4450..4537Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1344 4451..4537 +
1622929084.2020981-CDS-H-canaliculatus_F_contig1344:4650..47161622929084.2020981-CDS-H-canaliculatus_F_contig1344:4650..4716Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1344 4651..4716 +
1696845673.2927682-CDS-H-canaliculatus_F_contig1344:4650..47161696845673.2927682-CDS-H-canaliculatus_F_contig1344:4650..4716Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1344 4651..4716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1344.2797.1prot_H-canaliculatus_F_contig1344.2797.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1344 4451..4716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1344.2797.1

>prot_H-canaliculatus_F_contig1344.2797.1 ID=prot_H-canaliculatus_F_contig1344.2797.1|Name=mRNA_H-canaliculatus_F_contig1344.2797.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=51bp
QAIREKVHGPDHPAVAQSLDNRAGLLEKQGKHEEAGLLYLRIIEIGEKTL
G
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mRNA from alignment at H-canaliculatus_F_contig1344:4451..4716+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1344.2797.1 ID=mRNA_H-canaliculatus_F_contig1344.2797.1|Name=mRNA_H-canaliculatus_F_contig1344.2797.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=266bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1344:4451..4716+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGCCATACGAGAGAAGGTGCATGGCCCGGATCACCCAGCTGTGGCCCA
GTCGCTTGACAACCGGGCGGGGTTGTTGGAGAAGCAGGTGAAAGCCACAG
GAATTTTCCAGGAATTTTCGTTGGGTCCACGAGTGTCGGTGAATCGTTTT
TTGTTCTTGGTGGATCCCTTCCTTAAAACAATATATTATATGCTTCACAG
GGTAAACACGAAGAGGCTGGCCTCCTGTATCTTAGAATTATTGAGATTGG
GGAGAAGACGCTGGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1344:4451..4716+

>mRNA_H-canaliculatus_F_contig1344.2797.1 ID=mRNA_H-canaliculatus_F_contig1344.2797.1|Name=mRNA_H-canaliculatus_F_contig1344.2797.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=306bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1344:4451..4716+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGCCATACGAGAGAAGGTGCATGGCCCGGATCACCCAGCTGTGGCCCA
GTCGCTTGACAACCGGGCGGGGTTGTTGGAGAAGCAGCAGGCCATACGAG
AGAAGGTGCATGGCCCGGATCACCCAGCTGTGGCCCAGTCGCTTGACAAC
CGGGCGGGGTTGTTGGAGAAGCAGGGTAAACACGAAGAGGCTGGCCTCCT
GTATCTTAGAATTATTGAGATTGGGGAGAAGACGCTGGGCGGTAAACACG
AAGAGGCTGGCCTCCTGTATCTTAGAATTATTGAGATTGGGGAGAAGACG
CTGGGC
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