mRNA_H-canaliculatus_F_contig13437.2796.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13437.2796.1
Unique NamemRNA_H-canaliculatus_F_contig13437.2796.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13437.2796.1 vs. uniprot
Match: D8LIK7_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK7_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.190e-13
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 NVGDCRAVLCRGGRAIDLTSDHRPSRDDERQRVKEAGG 114
            NVGDCRAVLCR G AIDLTSDHRPSRDDER RVKEAGG
Sbjct: 2114 NVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGG 2151
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13437.2796.1 vs. uniprot
Match: A0A6H5L844_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L844_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.200e-13
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 NVGDCRAVLCRGGRAIDLTSDHRPSRDDERQRVKEAGG 114
            NVGDCRAVLCR G AIDLTSDHRPSRDDER RVKEAGG
Sbjct: 1058 NVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGG 1095
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13437.2796.1 vs. uniprot
Match: H3G5M9_PHYRM (PPM-type phosphatase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5M9_PHYRM)

HSP 1 Score: 65.5 bits (158), Expect = 2.930e-12
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 NVGDCRAVLCRGGRAIDLTSDHRPSRDDERQRVKEAGG 114
            NVGDCRAV+CRGGRA+ LTSDH+P R DE+QR++ AGG
Sbjct:    1 NVGDCRAVICRGGRAVTLTSDHKPDRPDEKQRIERAGG 38
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13437.2796.1 vs. uniprot
Match: A0A662XQL9_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQL9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.870e-12
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 NVGDCRAVLCRGGRAIDLTSDHRPSRDDERQRVKEAGG 114
            N+GDCRAVLCRGGRA+ LTSDH+P R DERQR+++AGG
Sbjct:  277 NLGDCRAVLCRGGRAVPLTSDHKPDRPDERQRIEQAGG 314
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13437.2796.1 vs. uniprot
Match: G4YH79_PHYSP (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YH79_PHYSP)

HSP 1 Score: 63.5 bits (153), Expect = 1.840e-11
Identity = 27/38 (71.05%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 NVGDCRAVLCRGGRAIDLTSDHRPSRDDERQRVKEAGG 114
            N+GDCRAVLCRGG A+ LTSDH+PSR DE++R+++AGG
Sbjct:   56 NLGDCRAVLCRGGHAVPLTSDHKPSRPDEKKRIEKAGG 93
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13437.2796.1 vs. uniprot
Match: D0MZT4_PHYIT (PPM-type phosphatase domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MZT4_PHYIT)

HSP 1 Score: 63.5 bits (153), Expect = 1.870e-11
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 NVGDCRAVLCRGGRAIDLTSDHRPSRDDERQRVKEAGG 114
            NVGDCRAV+CRGGR + LTSDH+P R DE+QR+++AGG
Sbjct:   67 NVGDCRAVMCRGGRGVALTSDHKPDRPDEQQRIEKAGG 104
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13437.2796.1 vs. uniprot
Match: M4BIA9_HYAAE (PPM-type phosphatase domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BIA9_HYAAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.390e-11
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 NVGDCRAVLCRGGRAIDLTSDHRPSRDDERQRVKEAGG 114
            NVGDCRAV+CRGGR + LTSDH+P R DERQR+++AGG
Sbjct:  267 NVGDCRAVMCRGGRGVPLTSDHKPDRPDERQRIEKAGG 304
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13437.2796.1 vs. uniprot
Match: A0A3F2S1K9_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S1K9_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.590e-11
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 NVGDCRAVLCRGGRAIDLTSDHRPSRDDERQRVKEAGG 114
            NVGDCRAV+CRGGR + LTSDH+P R DERQR+++AGG
Sbjct:  121 NVGDCRAVVCRGGRGVPLTSDHKPDRPDERQRIEKAGG 158
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13437.2796.1 vs. uniprot
Match: A0A3R7K3U9_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K3U9_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.260e-11
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 NVGDCRAVLCRGGRAIDLTSDHRPSRDDERQRVKEAGG 114
            NVGDCRAV+CRGGR + LTSDH+P R DERQR+++AGG
Sbjct:  612 NVGDCRAVVCRGGRGVPLTSDHKPDRPDERQRIEKAGG 649
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13437.2796.1 vs. uniprot
Match: A0A7S0N167_9CHLO (Protein-serine/threonine phosphatase n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N167_9CHLO)

HSP 1 Score: 64.7 bits (156), Expect = 4.070e-11
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 NVGDCRAVLCRGGRAIDLTSDHRPSRDDERQRVKEAGG 114
            N+GDCRA+LCRGGRA+ L+ DHRPSR DERQR+++AGG
Sbjct:  160 NLGDCRALLCRGGRAVRLSEDHRPSRRDERQRIQQAGG 197
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13437.2796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIK7_ECTSI2.190e-1392.11cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A6H5L844_9PHAE2.200e-1392.11PPM-type phosphatase domain-containing protein n=1... [more]
H3G5M9_PHYRM2.930e-1273.68PPM-type phosphatase domain-containing protein n=1... [more]
A0A662XQL9_9STRA6.870e-1276.32PPM-type phosphatase domain-containing protein n=1... [more]
G4YH79_PHYSP1.840e-1171.05PPM-type phosphatase domain-containing protein (Fr... [more]
D0MZT4_PHYIT1.870e-1171.05PPM-type phosphatase domain-containing protein n=1... [more]
M4BIA9_HYAAE2.390e-1173.68PPM-type phosphatase domain-containing protein n=1... [more]
A0A3F2S1K9_9STRA2.590e-1173.68PPM-type phosphatase domain-containing protein n=1... [more]
A0A3R7K3U9_9STRA3.260e-1173.68PPM-type phosphatase domain-containing protein n=2... [more]
A0A7S0N167_9CHLO4.070e-1173.68Protein-serine/threonine phosphatase n=1 Tax=Pyram... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13437contigH-canaliculatus_F_contig13437:97..216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue4.1e-11
Seed eggNOG ortholog2880.D8LIK7
Preferred namespnA
KEGG koko:K01090,ko:K07359,ko:K14803,ko:K17500
KEGG Pathwayko04140,ko04152,ko04211,ko04920,ko04921,ko05034,map04140,map04152,map04211,map04920,map04921,map05034
GOsGO:0000166,GO:0000287,GO:0001101,GO:0001726,GO:0001882,GO:0001883,GO:0002682,GO:0002697,GO:0002831,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009414,GO:0009415,GO:0009628,GO:0009651,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010556,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0019001,GO:0019219,GO:0019222,GO:0019538,GO:0030145,GO:0030154,GO:0031252,GO:0031323,GO:0031326,GO:0031347,GO:0032101,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033554,GO:0033993,GO:0035639,GO:0036094,GO:0036211,GO:0042221,GO:0042578,GO:0042995,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043618,GO:0043620,GO:0043900,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0048583,GO:0048856,GO:0048869,GO:0050688,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061392,GO:0061416,GO:0065007,GO:0071214,GO:0071470,GO:0071472,GO:0071704,GO:0080090,GO:0080134,GO:0097159,GO:0097305,GO:0097367,GO:0104004,GO:0120025,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901700,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.peptidyl-threonine phosphorylation
EggNOG OGsCOG0631@1,KOG0585@1,KOG0585@2759,KOG0698@2759
EC2.7.11.17,3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko03009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929084.1512208-CDS-H-canaliculatus_F_contig13437:96..2161622929084.1512208-CDS-H-canaliculatus_F_contig13437:96..216Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13437 97..216 +
1696845673.2692368-CDS-H-canaliculatus_F_contig13437:96..2161696845673.2692368-CDS-H-canaliculatus_F_contig13437:96..216Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13437 97..216 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13437.2796.1prot_H-canaliculatus_F_contig13437.2796.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13437 97..216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13437.2796.1

>prot_H-canaliculatus_F_contig13437.2796.1 ID=prot_H-canaliculatus_F_contig13437.2796.1|Name=mRNA_H-canaliculatus_F_contig13437.2796.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=40bp
NVGDCRAVLCRGGRAIDLTSDHRPSRDDERQRVKEAGGEK
back to top

mRNA from alignment at H-canaliculatus_F_contig13437:97..216+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13437.2796.1 ID=mRNA_H-canaliculatus_F_contig13437.2796.1|Name=mRNA_H-canaliculatus_F_contig13437.2796.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=120bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13437:97..216+ (Hapterophycus canaliculatus Oshoro5f female)
AATGTGGGGGACTGTCGCGCGGTGTTGTGCCGCGGGGGCAGAGCGATCGA
CCTCACCTCCGATCACCGACCCTCGAGAGATGACGAAAGGCAAAGGGTCA
AGGAAGCGGGCGGTGAGAAA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13437:97..216+

>mRNA_H-canaliculatus_F_contig13437.2796.1 ID=mRNA_H-canaliculatus_F_contig13437.2796.1|Name=mRNA_H-canaliculatus_F_contig13437.2796.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=240bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13437:97..216+ (Hapterophycus canaliculatus Oshoro5f female)
AATGTGGGGGACTGTCGCGCGGTGTTGTGCCGCGGGGGCAGAGCGATCGA
CCTCACCTCCGATCACCGACCCTCGAGAGATGACGAAAGGCAAAGGGTCA
AGGAAGCGGGCGGTGAGAAAAATGTGGGGGACTGTCGCGCGGTGTTGTGC
CGCGGGGGCAGAGCGATCGACCTCACCTCCGATCACCGACCCTCGAGAGA
TGACGAAAGGCAAAGGGTCAAGGAAGCGGGCGGTGAGAAA
back to top