mRNA_H-canaliculatus_F_contig13421.2785.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13421.2785.1
Unique NamemRNA_H-canaliculatus_F_contig13421.2785.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13421.2785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13421contigH-canaliculatus_F_contig13421:1235..2349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size263
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929082.8136017-CDS-H-canaliculatus_F_contig13421:1234..14171622929082.8136017-CDS-H-canaliculatus_F_contig13421:1234..1417Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13421 1235..1417 -
1696845672.6879315-CDS-H-canaliculatus_F_contig13421:1234..14171696845672.6879315-CDS-H-canaliculatus_F_contig13421:1234..1417Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13421 1235..1417 -
1622929082.8422961-CDS-H-canaliculatus_F_contig13421:2271..23491622929082.8422961-CDS-H-canaliculatus_F_contig13421:2271..2349Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13421 2272..2349 -
1696845672.697351-CDS-H-canaliculatus_F_contig13421:2271..23491696845672.697351-CDS-H-canaliculatus_F_contig13421:2271..2349Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13421 2272..2349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13421.2785.1prot_H-canaliculatus_F_contig13421.2785.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13421 1235..2349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13421.2785.1

>prot_H-canaliculatus_F_contig13421.2785.1 ID=prot_H-canaliculatus_F_contig13421.2785.1|Name=mRNA_H-canaliculatus_F_contig13421.2785.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=87bp
GNVGSLDGEEDAAAGEKLNRRPKHRQDDDDDDSGLGEDDPFDELPTQKLA
ALSLNTAAGARKGRAKAATTGKAASASAAAATGKSEP
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mRNA from alignment at H-canaliculatus_F_contig13421:1235..2349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13421.2785.1 ID=mRNA_H-canaliculatus_F_contig13421.2785.1|Name=mRNA_H-canaliculatus_F_contig13421.2785.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1115bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13421:1235..2349- (Hapterophycus canaliculatus Oshoro5f female)
GGAAATGTGGGATCCCTGGATGGCGAAGAGGATGCGGCGGCCGGCGAGAA
GCTCAACCGCCGCCCGAAGCACCGCCAGGTTCGTTCGCGAAAGTTTCGAA
AAGGGTTTTCTCACGCTTGTCCACGGTGCCATGACCGCCACTTCACACCA
TTGTGTTCATTCCTTTTTTTTTTTTGTATTTGGCTGGTGTTCCTATCTTT
CACTCCGTGGAGTTCTTCATCGTCTGTCTTCAGCTTCGTCTATGTCTGGG
TAGAAGCTTTTGGTCGAGTGGGCGCCTCACCGTTCAATGCATGTTTTCTT
TTTCATAAATCCATTTCATGCTGATTTGGGTTGGATAACGCCGGCTTGAT
CCAGACGGTGTGCCTAAAAAGTTCCGCCCCTCCTGAAAATCTTGTCGCCC
TTGGAGCAGGAATGCCAGGTATGACGTAGTTATCAGCATCAGCATCCACA
CGTTGGGTTCGAAGTCATGTTAGTGTTACTGTAGGGCTCCAAACCATGCC
GCCCGCCGAGCAAGGGTTTTCTCCCTCGATATGTTGTGACGGAGTGTTCG
TCCGGACCACGAGCAAAACCGGTGTTGTCTGCTGAAAAACGTGGAAATTT
GGCTCGGTTGCCGTTGCTTTCGAGCTTGACGGATCTCCGCGGCGCTTCGG
AGGCGTTCTTCGAAACAGCCAGCACCATGAGGTTACCTAGTCCCTCTCGA
AGTCCTTGTCGCCCAAGAATTGGGGTCGCAACCGGCTGCGGGAGCAGACG
GCTCGCTTGGCCGCGTCGGTGGGTGGTGGTGCCCGTTTTACCACACCGGG
GGAGCTGGGGGGAGCGATGAGGCCGGGTGCGACCAAGCTCGACCCAGTAT
CATGTCTTCGATGTCATGCCTTCGGTATCACGTCTCCGAAAGCTTGTTTC
ATACGCCTTTTTTACGACCGACTTTTCACCAGGATGACGACGATGATGAC
AGCGGCCTAGGAGAGGACGACCCTTTCGACGAGCTCCCCACCCAGAAGCT
CGCCGCCTTGAGCCTCAACACCGCCGCCGGTGCGCGCAAGGGCAGGGCGA
AGGCTGCAACAACGGGGAAGGCAGCGTCGGCGTCGGCGGCTGCGGCTACG
GGGAAGTCGGAGCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13421:1235..2349-

>mRNA_H-canaliculatus_F_contig13421.2785.1 ID=mRNA_H-canaliculatus_F_contig13421.2785.1|Name=mRNA_H-canaliculatus_F_contig13421.2785.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=522bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13421:1235..2349- (Hapterophycus canaliculatus Oshoro5f female)
GGAAATGTGGGATCCCTGGATGGCGAAGAGGATGCGGCGGCCGGCGAGAA
GCTCAACCGCCGCCCGAAGCACCGCCAGGGAAATGTGGGATCCCTGGATG
GCGAAGAGGATGCGGCGGCCGGCGAGAAGCTCAACCGCCGCCCGAAGCAC
CGCCAGGATGACGACGATGATGACAGCGGCCTAGGAGAGGACGACCCTTT
CGACGAGCTCCCCACCCAGAAGCTCGCCGCCTTGAGCCTCAACACCGCCG
CCGGTGCGCGCAAGGGCAGGGCGAAGGCTGCAACAACGGGGAAGGCAGCG
TCGGCGTCGGCGGCTGCGGCTACGGGGAAGTCGGAGCCGGATGACGACGA
TGATGACAGCGGCCTAGGAGAGGACGACCCTTTCGACGAGCTCCCCACCC
AGAAGCTCGCCGCCTTGAGCCTCAACACCGCCGCCGGTGCGCGCAAGGGC
AGGGCGAAGGCTGCAACAACGGGGAAGGCAGCGTCGGCGTCGGCGGCTGC
GGCTACGGGGAAGTCGGAGCCG
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