mRNA_H-canaliculatus_F_contig13409.2778.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13409.2778.1
Unique NamemRNA_H-canaliculatus_F_contig13409.2778.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13409.2778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13409contigH-canaliculatus_F_contig13409:354..790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size437
Cds size324
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929081.891208-CDS-H-canaliculatus_F_contig13409:353..6771622929081.891208-CDS-H-canaliculatus_F_contig13409:353..677Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13409 354..677 +
1696845672.2420468-CDS-H-canaliculatus_F_contig13409:353..6771696845672.2420468-CDS-H-canaliculatus_F_contig13409:353..677Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13409 354..677 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929081.9099221-UTR-H-canaliculatus_F_contig13409:677..7901622929081.9099221-UTR-H-canaliculatus_F_contig13409:677..790Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13409 678..790 +
1696845672.2502031-UTR-H-canaliculatus_F_contig13409:677..7901696845672.2502031-UTR-H-canaliculatus_F_contig13409:677..790Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13409 678..790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13409.2778.1prot_H-canaliculatus_F_contig13409.2778.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13409 354..677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13409.2778.1

>prot_H-canaliculatus_F_contig13409.2778.1 ID=prot_H-canaliculatus_F_contig13409.2778.1|Name=mRNA_H-canaliculatus_F_contig13409.2778.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=108bp
MGRREGGGGRVIRGVFESLVSRGDHRHRVFVLAFRVFSSGGFSRVGVGVR
RTALVCTGCGAAVEAATTKNEGATGGRGRESRPATLLRHEGYARGPYLAV
ARLWAGC*
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mRNA from alignment at H-canaliculatus_F_contig13409:354..790+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13409.2778.1 ID=mRNA_H-canaliculatus_F_contig13409.2778.1|Name=mRNA_H-canaliculatus_F_contig13409.2778.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=437bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13409:354..790+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAAGGCGGGAGGGGGGGGGGGGGCGTGTTATCCGTGGTGTGTTCGA
GTCCTTGGTGTCCAGGGGGGACCACCGGCACCGTGTGTTTGTCCTAGCTT
TTCGGGTTTTTAGTTCGGGAGGGTTTTCGCGTGTTGGTGTTGGTGTTCGC
CGCACTGCTCTCGTGTGTACGGGCTGTGGTGCGGCCGTCGAAGCTGCAAC
AACGAAAAACGAGGGGGCTACGGGTGGACGAGGCAGAGAATCGCGGCCGG
CAACCCTACTCCGTCATGAAGGATACGCGAGGGGACCATACCTTGCCGTT
GCTCGCCTGTGGGCGGGCTGTTGACCGAAGTCTTTCCCGAAAGCTACAAG
AGAGAGCCACCTTCTTGCTTTTTTTTTCGCCCGGTGGTTGGCCTCTGAGC
GATCAGATTTGGAGCCTTGATCTATACTAGTCGCATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13409:354..790+

>mRNA_H-canaliculatus_F_contig13409.2778.1 ID=mRNA_H-canaliculatus_F_contig13409.2778.1|Name=mRNA_H-canaliculatus_F_contig13409.2778.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=648bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13409:354..790+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAAGGCGGGAGGGGGGGGGGGGGCGTGTTATCCGTGGTGTGTTCGA
GTCCTTGGTGTCCAGGGGGGACCACCGGCACCGTGTGTTTGTCCTAGCTT
TTCGGGTTTTTAGTTCGGGAGGGTTTTCGCGTGTTGGTGTTGGTGTTCGC
CGCACTGCTCTCGTGTGTACGGGCTGTGGTGCGGCCGTCGAAGCTGCAAC
AACGAAAAACGAGGGGGCTACGGGTGGACGAGGCAGAGAATCGCGGCCGG
CAACCCTACTCCGTCATGAAGGATACGCGAGGGGACCATACCTTGCCGTT
GCTCGCCTGTGGGCGGGCTGTTGAATGGGAAGGCGGGAGGGGGGGGGGGG
GCGTGTTATCCGTGGTGTGTTCGAGTCCTTGGTGTCCAGGGGGGACCACC
GGCACCGTGTGTTTGTCCTAGCTTTTCGGGTTTTTAGTTCGGGAGGGTTT
TCGCGTGTTGGTGTTGGTGTTCGCCGCACTGCTCTCGTGTGTACGGGCTG
TGGTGCGGCCGTCGAAGCTGCAACAACGAAAAACGAGGGGGCTACGGGTG
GACGAGGCAGAGAATCGCGGCCGGCAACCCTACTCCGTCATGAAGGATAC
GCGAGGGGACCATACCTTGCCGTTGCTCGCCTGTGGGCGGGCTGTTGA
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