mRNA_H-canaliculatus_F_contig13409.2779.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13409.2779.1
Unique NamemRNA_H-canaliculatus_F_contig13409.2779.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13409.2779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13409contigH-canaliculatus_F_contig13409:2351..2690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size302
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929081.8208163-CDS-H-canaliculatus_F_contig13409:2352..25171622929081.8208163-CDS-H-canaliculatus_F_contig13409:2352..2517Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13409 2353..2517 -
1696845672.2224526-CDS-H-canaliculatus_F_contig13409:2352..25171696845672.2224526-CDS-H-canaliculatus_F_contig13409:2352..2517Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13409 2353..2517 -
1622929081.838186-CDS-H-canaliculatus_F_contig13409:2555..26901622929081.838186-CDS-H-canaliculatus_F_contig13409:2555..2690Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13409 2556..2690 -
1696845672.233584-CDS-H-canaliculatus_F_contig13409:2555..26901696845672.233584-CDS-H-canaliculatus_F_contig13409:2555..2690Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13409 2556..2690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13409.2779.1prot_H-canaliculatus_F_contig13409.2779.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13409 2353..2690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13409.2779.1

>prot_H-canaliculatus_F_contig13409.2779.1 ID=prot_H-canaliculatus_F_contig13409.2779.1|Name=mRNA_H-canaliculatus_F_contig13409.2779.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=100bp
ANDANAHARGVGAGLSFAAGIGAPSKKLPEQNKSAVCVCVCVCVCGAAVS
GLRRGNHGCQMHTCTHTAPRKRTYQNRKQQTRYAQNTRDTHPPETRSLRR
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mRNA from alignment at H-canaliculatus_F_contig13409:2351..2690-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13409.2779.1 ID=mRNA_H-canaliculatus_F_contig13409.2779.1|Name=mRNA_H-canaliculatus_F_contig13409.2779.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=340bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13409:2351..2690- (Hapterophycus canaliculatus Oshoro5f female)
GCCAACGATGCCAACGCACATGCACGAGGGGTGGGGGCAGGGTTGTCTTT
CGCGGCTGGGATAGGTGCTCCCTCGAAAAAACTACCCGAGCAGAACAAAT
CTGCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGGAGGGGGCTGCTGTATCAGGCCTTCGCCGA
GGAAATCACGGGTGCCAGATGCACACATGCACACACACGGCGCCACGGAA
ACGCACCTACCAAAACAGAAAACAACAAACGCGTTACGCACAAAACACCA
GAGATACACATCCACCCGAAACACGCTCCCTCCGCCGATC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13409:2351..2690-

>mRNA_H-canaliculatus_F_contig13409.2779.1 ID=mRNA_H-canaliculatus_F_contig13409.2779.1|Name=mRNA_H-canaliculatus_F_contig13409.2779.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=600bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13409:2351..2690- (Hapterophycus canaliculatus Oshoro5f female)
GCCAACGATGCCAACGCACATGCACGAGGGGTGGGGGCAGGGTTGTCTTT
CGCGGCTGGGATAGGTGCTCCCTCGAAAAAACTACCCGAGCAGAACAAAT
CTGCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCAACGATGCCAAC
GCACATGCACGAGGGGTGGGGGCAGGGTTGTCTTTCGCGGCTGGGATAGG
TGCTCCCTCGAAAAAACTACCCGAGCAGAACAAATCTGCCGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGGGGCTGCTGTATCAGGCCTTCGCCGAGGA
AATCACGGGTGCCAGATGCACACATGCACACACACGGCGCCACGGAAACG
CACCTACCAAAACAGAAAACAACAAACGCGTTACGCACAAAACACCAGAG
ATACACATCCACCCGAAACACGCTCCCTCCGCCGAGGGGCTGCTGTATCA
GGCCTTCGCCGAGGAAATCACGGGTGCCAGATGCACACATGCACACACAC
GGCGCCACGGAAACGCACCTACCAAAACAGAAAACAACAAACGCGTTACG
CACAAAACACCAGAGATACACATCCACCCGAAACACGCTCCCTCCGCCGA
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