mRNA_H-canaliculatus_F_contig13399.2762.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13399.2762.1
Unique NamemRNA_H-canaliculatus_F_contig13399.2762.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13399.2762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13399contigH-canaliculatus_F_contig13399:170..989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13399.2762.1prot_H-canaliculatus_F_contig13399.2762.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13399 176..989 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.6284823-UTR-H-canaliculatus_F_contig13399:169..1751622929077.6284823-UTR-H-canaliculatus_F_contig13399:169..175Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13399 170..175 +
1696845671.2297132-UTR-H-canaliculatus_F_contig13399:169..1751696845671.2297132-UTR-H-canaliculatus_F_contig13399:169..175Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13399 170..175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.661778-CDS-H-canaliculatus_F_contig13399:175..3341622929077.661778-CDS-H-canaliculatus_F_contig13399:175..334Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13399 176..334 +
1696845671.2398088-CDS-H-canaliculatus_F_contig13399:175..3341696845671.2398088-CDS-H-canaliculatus_F_contig13399:175..334Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13399 176..334 +
1622929077.6801827-CDS-H-canaliculatus_F_contig13399:899..9891622929077.6801827-CDS-H-canaliculatus_F_contig13399:899..989Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13399 900..989 +
1696845671.255434-CDS-H-canaliculatus_F_contig13399:899..9891696845671.255434-CDS-H-canaliculatus_F_contig13399:899..989Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13399 900..989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13399.2762.1

>prot_H-canaliculatus_F_contig13399.2762.1 ID=prot_H-canaliculatus_F_contig13399.2762.1|Name=mRNA_H-canaliculatus_F_contig13399.2762.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=83bp
MRVDGVQPNVINYNLSIRALGRGGDWRRATDLLAEMAEAGVRPDERTFNA
AIEACGRGGCWERAVSLMDDMRRQGLVPDGLTY
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mRNA from alignment at H-canaliculatus_F_contig13399:170..989+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13399.2762.1 ID=mRNA_H-canaliculatus_F_contig13399.2762.1|Name=mRNA_H-canaliculatus_F_contig13399.2762.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=820bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13399:170..989+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGAAATGAGAGTCGACGGCGTGCAGCCGAACGTCATCAACTACAACCT
GTCCATTCGAGCGCTGGGCAGGGGAGGGGACTGGCGGCGGGCGACGGACC
TCCTGGCAGAAATGGCCGAGGCAGGGGTGCGCCCCGACGAGAGGACGTTT
AACGCCGCGATCGAGGTGAGGGCGGGGGGGCGGGCTGAGGCAGGGACAGA
GCGCGACGCTTGATCTCGAGAGCAGACGGCTGGTGCCTGCCGATGAACGT
GCTTGCCTTCGCCGTGCAGGAGCAGGCAGAGACTCTATCCAGTTCTTGAG
CGCGCTTTTTGTTTTTCGATGCGAAGCGTGGCCCGTGTCGTCCAAGACGC
ACCTATGCTGGCGAAGGTGTCTCGCCAGCGGTCCCTGGAGCACACAGCCT
TTGATCCGTTCCTCGCCGGACTCAGACACGCCTCCGGGGTTTCCGCCGCT
ATGTCGACGACCCCCCTTACTCCCCCGCCCTACCCCCCCGCTCCCTCCCT
CGCTCCATCCTGAAAGAGGGTTCATAGCCGCTGGTCGGACGGCTCGGGCA
AGCAACAAACGAGAACGTCCTCGCCCTCCCTGCGTTCCATACTCCGGCGT
TTTTTGTGGAAACATACAATCGCGAAAAAAAATGAGATCGGTGGCGGCGT
TCGTCGCGATAACTTCGTCGCAATCGAGCTCTTCTTGCCCGACGCCGTCG
CCGCGTTCGGTTTTCTATGCTCGTTGGCAGGCGTGCGGCAGGGGGGGCTG
CTGGGAACGAGCGGTGTCGCTGATGGACGACATGCGGCGTCAAGGCCTGG
TGCCCGACGGCCTCACTTAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13399:170..989+

>mRNA_H-canaliculatus_F_contig13399.2762.1 ID=mRNA_H-canaliculatus_F_contig13399.2762.1|Name=mRNA_H-canaliculatus_F_contig13399.2762.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=498bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13399:170..989+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGAGTCGACGGCGTGCAGCCGAACGTCATCAACTACAACCTGTCCAT
TCGAGCGCTGGGCAGGGGAGGGGACTGGCGGCGGGCGACGGACCTCCTGG
CAGAAATGGCCGAGGCAGGGGTGCGCCCCGACGAGAGGACGTTTAACGCC
GCGATCGAGATGAGAGTCGACGGCGTGCAGCCGAACGTCATCAACTACAA
CCTGTCCATTCGAGCGCTGGGCAGGGGAGGGGACTGGCGGCGGGCGACGG
ACCTCCTGGCAGAAATGGCCGAGGCAGGGGTGCGCCCCGACGAGAGGACG
TTTAACGCCGCGATCGAGGCGTGCGGCAGGGGGGGCTGCTGGGAACGAGC
GGTGTCGCTGATGGACGACATGCGGCGTCAAGGCCTGGTGCCCGACGGCC
TCACTTACGCGTGCGGCAGGGGGGGCTGCTGGGAACGAGCGGTGTCGCTG
ATGGACGACATGCGGCGTCAAGGCCTGGTGCCCGACGGCCTCACTTAC
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