mRNA_H-canaliculatus_F_contig13391.2758.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13391.2758.1
Unique NamemRNA_H-canaliculatus_F_contig13391.2758.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13391.2758.1 vs. uniprot
Match: A0A6H5K2P4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P4_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 9.120e-36
Identity = 69/125 (55.20%), Postives = 91/125 (72.80%), Query Frame = 1 
Query:    4 GTIIKTLELGISHLVKAELMKAILR--------DESLRKGDKRFPIYVAFWDVVAQAPWYGLLRICSMRDKTAQTRANQFYQTIVDVLGFARHKMMYILSDITALVFYRKGWVCHPASRNADEGR 354
            GT +K L LGI+HL  AEL+  IL+        DESLRKGDK+FPI+VA WDVVA  PW+GLLR+CSM+DKTA+T+A+ F++TIV+VL + R +++Y+L D TA V   KG VC+ A+  A  GR
Sbjct:  214 GTTVKRLALGIAHLNMAELIAMILKAPYLLIAGDESLRKGDKKFPIFVACWDVVASRPWWGLLRMCSMKDKTAETQASLFFETIVNVLKYPRRQVLYVLPDNTASVSGEKGGVCNQAAAEAAGGR 338
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BLAST of mRNA_H-canaliculatus_F_contig13391.2758.1 vs. uniprot
Match: A0A6H5JNC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNC8_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.830e-32
Identity = 64/111 (57.66%), Postives = 85/111 (76.58%), Query Frame = 1 
Query:    4 GTIIKTLELGISHLVKAELMKAILR--------DESLRKGDKRFPIYVAFWDVVAQAPWYGLLRICSMRDKTAQTRANQFYQTIVDVLGFARHKMMYILSDITALVFYRKG 312
            GT +K L LGI+HL  AEL+  IL+        DESLRKGDK+FPI+VA WDVVA  PW+GLLR+CSM+DKTA+T+A+ F++TIV+VL + RH+++Y+LSD TA +   KG
Sbjct:  354 GTTVKRLALGIAHLDMAELIAMILKAPYLLIAGDESLRKGDKKFPIFVACWDVVAGRPWWGLLRMCSMKDKTAETQASIFFETIVNVLKYPRHQVLYVLSDNTACISGEKG 464
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BLAST of mRNA_H-canaliculatus_F_contig13391.2758.1 vs. uniprot
Match: A0A6H5JNK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK4_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 4.620e-29
Identity = 58/103 (56.31%), Postives = 78/103 (75.73%), Query Frame = 1 
Query:   13 IKTLELGISHLVKAELMKAILR--------DESLRKGDKRFPIYVAFWDVVAQAPWYGLLRICSMRDKTAQTRANQFYQTIVDVLGFARHKMMYILSDITALV 297
            +K L LGI+ L   EL+KA+LR        DESLR  DK+FP++VAF DV A APW+GLLR+CSM+DKTA+T+A  FY+TIVD LG+ +H+++++LSD TA V
Sbjct:  253 VKVLALGITQLDGEELVKAVLRAPFLLIADDESLRNEDKKFPVFVAFHDVEADAPWFGLLRVCSMKDKTAETQAQLFYETIVDTLGYPKHQVLFVLSDNTASV 355
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BLAST of mRNA_H-canaliculatus_F_contig13391.2758.1 vs. uniprot
Match: A0A6H5JND1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND1_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 5.060e-29
Identity = 57/103 (55.34%), Postives = 78/103 (75.73%), Query Frame = 1 
Query:   13 IKTLELGISHLVKAELMKAILR--------DESLRKGDKRFPIYVAFWDVVAQAPWYGLLRICSMRDKTAQTRANQFYQTIVDVLGFARHKMMYILSDITALV 297
            +K L  GI+ L   EL++A+LR        DESLR GDK+FP++VAF DV A APW+GLLR+CSM+DKTA+T+A  FY+TIVD LG+ +H+++++LSD TA V
Sbjct:  200 VKVLAFGITQLDGEELVEAVLRAPFLLIAGDESLRNGDKKFPVFVAFHDVEADAPWFGLLRVCSMKDKTAETQAQLFYETIVDTLGYPKHQVLFVLSDNTASV 302
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BLAST of mRNA_H-canaliculatus_F_contig13391.2758.1 vs. uniprot
Match: D7FJJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJJ7_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 5.140e-26
Identity = 53/91 (58.24%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:   13 IKTLELGISHLVKAELMKAILR--------DESLRKGDKRFPIYVAFWDVVAQAPWYGLLRICSMRDKTAQTRANQFYQTIVDVLGFARHK 261
            +K L LGI+ L   EL+KAIL+        DESLR GDK+FPI+VAF+DV A APW+GL+R+CSM+DKTA+T+A  FY+TIVD LG+ +H+
Sbjct:  243 VKVLALGITQLDGNELVKAILKAPFLLIAGDESLRNGDKKFPIFVAFYDVEADAPWFGLVRVCSMKDKTAETQAQLFYETIVDTLGYPKHQ 333
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BLAST of mRNA_H-canaliculatus_F_contig13391.2758.1 vs. uniprot
Match: D7FHK1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK1_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.280e-25
Identity = 53/91 (58.24%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:   13 IKTLELGISHLVKAELMKAILR--------DESLRKGDKRFPIYVAFWDVVAQAPWYGLLRICSMRDKTAQTRANQFYQTIVDVLGFARHK 261
            +K L LGI+ L   EL+KAIL+        DESLR GDK+FPI+VAF+DV A APW+GL+R+CSM+DKTA+T+A  FY+TIVD LG+ +H+
Sbjct:  346 VKVLALGITQLDGNELVKAILKAPFLLIAGDESLRNGDKKFPIFVAFYDVEADAPWFGLVRVCSMKDKTAETQAQLFYETIVDTLGYPKHQ 436
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13391.2758.1 vs. uniprot
Match: A0A6H5K280_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K280_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.820e-24
Identity = 51/91 (56.04%), Postives = 68/91 (74.73%), Query Frame = 1 
Query:   13 IKTLELGISHLVKAELMKAILR--------DESLRKGDKRFPIYVAFWDVVAQAPWYGLLRICSMRDKTAQTRANQFYQTIVDVLGFARHK 261
            +K L LGI+ L   EL+KA++R        DESLR  DK+FP++VAF DV A APW+GLLR+CSM+DKTA+T+A  FY+TIVD LG+ +H+
Sbjct:  132 VKVLALGITQLDGEELVKAVVRAPFLLIVGDESLRNRDKKFPVFVAFHDVEADAPWFGLLRVCSMKDKTAETQAQLFYETIVDTLGYPKHQ 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13391.2758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K2P4_9PHAE9.120e-3655.20Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNC8_9PHAE2.830e-3257.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNK4_9PHAE4.620e-2956.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JND1_9PHAE5.060e-2955.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJJ7_ECTSI5.140e-2658.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHK1_ECTSI1.280e-2558.24Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5K280_9PHAE1.820e-2456.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13391contigH-canaliculatus_F_contig13391:2058..2538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size483
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.359445-CDS-H-canaliculatus_F_contig13391:2057..25371622929077.359445-CDS-H-canaliculatus_F_contig13391:2057..2537Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13391 2058..2537 +
1696845671.1257048-CDS-H-canaliculatus_F_contig13391:2057..25371696845671.1257048-CDS-H-canaliculatus_F_contig13391:2057..2537Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13391 2058..2537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13391.2758.1prot_H-canaliculatus_F_contig13391.2758.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13391 2058..2537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13391.2758.1

>prot_H-canaliculatus_F_contig13391.2758.1 ID=prot_H-canaliculatus_F_contig13391.2758.1|Name=mRNA_H-canaliculatus_F_contig13391.2758.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=160bp
TGTIIKTLELGISHLVKAELMKAILRDESLRKGDKRFPIYVAFWDVVAQA
PWYGLLRICSMRDKTAQTRANQFYQTIVDVLGFARHKMMYILSDITALVF
YRKGWVCHPASRNADEGRTRKMRDACSHCLWCGSCAETGPRKGIGQGRQQ
SQGHGRGSGQ
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mRNA from alignment at H-canaliculatus_F_contig13391:2058..2538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13391.2758.1 ID=mRNA_H-canaliculatus_F_contig13391.2758.1|Name=mRNA_H-canaliculatus_F_contig13391.2758.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=481bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13391:2058..2538+ (Hapterophycus canaliculatus Oshoro5f female)
ACGGGGACGATCATAAAGACACTCGAGCTTGGCATTTCGCATCTGGTCAA
GGCCGAGCTCATGAAAGCGATCTTGCGAGATGAATCTCTCCGCAAAGGCG
ACAAAAGGTTCCCGATTTACGTGGCTTTTTGGGATGTGGTGGCTCAGGCG
CCGTGGTATGGGCTTCTCCGGATTTGCAGCATGAGGGACAAGACGGCCCA
AACGCGAGCGAACCAGTTCTATCAGACCATCGTCGACGTGCTTGGCTTCG
CCCGCCACAAGATGATGTACATTCTTTCTGACATCACCGCTTTGGTTTTT
TATCGAAAAGGGTGGGTATGTCACCCCGCTTCAAGAAATGCTGACGAAGG
ACGAACGCGAAAGATGCGGGATGCCTGCTCCCACTGCCTCTGGTGCGGCT
CCTGTGCGGAGACGGGGCCGCGGAAGGGGATCGGCCAAGGTCGACAGCAG
AGCCAGGGGCACGGAAGGGGATCGGGCCAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13391:2058..2538+

>mRNA_H-canaliculatus_F_contig13391.2758.1 ID=mRNA_H-canaliculatus_F_contig13391.2758.1|Name=mRNA_H-canaliculatus_F_contig13391.2758.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=960bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13391:2058..2538+ (Hapterophycus canaliculatus Oshoro5f female)
ACGGGGACGATCATAAAGACACTCGAGCTTGGCATTTCGCATCTGGTCAA
GGCCGAGCTCATGAAAGCGATCTTGCGAGATGAATCTCTCCGCAAAGGCG
ACAAAAGGTTCCCGATTTACGTGGCTTTTTGGGATGTGGTGGCTCAGGCG
CCGTGGTATGGGCTTCTCCGGATTTGCAGCATGAGGGACAAGACGGCCCA
AACGCGAGCGAACCAGTTCTATCAGACCATCGTCGACGTGCTTGGCTTCG
CCCGCCACAAGATGATGTACATTCTTTCTGACATCACCGCTTTGGTTTTT
TATCGAAAAGGGTGGGTATGTCACCCCGCTTCAAGAAATGCTGACGAAGG
ACGAACGCGAAAGATGCGGGATGCCTGCTCCCACTGCCTCTGGTGCGGCT
CCTGTGCGGAGACGGGGCCGCGGAAGGGGATCGGCCAAGGTCGACAGCAG
AGCCAGGGGCACGGAAGGGGATCGGGCCAGACGGGGACGATCATAAAGAC
ACTCGAGCTTGGCATTTCGCATCTGGTCAAGGCCGAGCTCATGAAAGCGA
TCTTGCGAGATGAATCTCTCCGCAAAGGCGACAAAAGGTTCCCGATTTAC
GTGGCTTTTTGGGATGTGGTGGCTCAGGCGCCGTGGTATGGGCTTCTCCG
GATTTGCAGCATGAGGGACAAGACGGCCCAAACGCGAGCGAACCAGTTCT
ATCAGACCATCGTCGACGTGCTTGGCTTCGCCCGCCACAAGATGATGTAC
ATTCTTTCTGACATCACCGCTTTGGTTTTTTATCGAAAAGGGTGGGTATG
TCACCCCGCTTCAAGAAATGCTGACGAAGGACGAACGCGAAAGATGCGGG
ATGCCTGCTCCCACTGCCTCTGGTGCGGCTCCTGTGCGGAGACGGGGCCG
CGGAAGGGGATCGGCCAAGGTCGACAGCAGAGCCAGGGGCACGGAAGGGG
ATCGGGCCAG
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