mRNA_H-canaliculatus_F_contig1339.2753.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1339.2753.1
Unique NamemRNA_H-canaliculatus_F_contig1339.2753.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1339.2753.1 vs. uniprot
Match: D8LG45_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG45_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.290e-13
Identity = 46/90 (51.11%), Postives = 56/90 (62.22%), Query Frame = 3 
Query:  147 MRWIFWVSTAVLVGVVSTGLSRNAGTKLVRVRPQEGCLRSYANVAG--SQEQQPQDLICCTERVDDEGDC-GMASYGVRTAQNKSLVCPP 407
            MR +F   TAVLV V   GLSRNAG+K VR R Q+GC R+YANVA   S+E+   DLICCT  V+D+G C G  S   +T  +K     P
Sbjct:    1 MRRMFLTFTAVLVAVACAGLSRNAGSKFVRTRVQQGCRRNYANVATARSREKPSLDLICCTGSVEDDGVCIGGGSRTTKTLTSKLAFVIP 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1339.2753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG45_ECTSI2.290e-1351.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1339contigH-canaliculatus_F_contig1339:1966..5837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue1.7e-12
Seed eggNOG ortholog2880.D8LG45
EggNOG OGs2B5VX@1,2S0JX@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_001990.1
Exons3
Model size672
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1339.2753.1prot_H-canaliculatus_F_contig1339.2753.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1339 2018..5691 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.1146333-UTR-H-canaliculatus_F_contig1339:1965..20171622929077.1146333-UTR-H-canaliculatus_F_contig1339:1965..2017Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1339 1966..2017 -
1696845670.9641788-UTR-H-canaliculatus_F_contig1339:1965..20171696845670.9641788-UTR-H-canaliculatus_F_contig1339:1965..2017Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1339 1966..2017 -
1622929077.1802812-UTR-H-canaliculatus_F_contig1339:5691..58371622929077.1802812-UTR-H-canaliculatus_F_contig1339:5691..5837Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1339 5692..5837 -
1696845671.0095222-UTR-H-canaliculatus_F_contig1339:5691..58371696845671.0095222-UTR-H-canaliculatus_F_contig1339:5691..5837Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1339 5692..5837 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.1298797-CDS-H-canaliculatus_F_contig1339:2017..22951622929077.1298797-CDS-H-canaliculatus_F_contig1339:2017..2295Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1339 2018..2295 -
1696845670.9758584-CDS-H-canaliculatus_F_contig1339:2017..22951696845670.9758584-CDS-H-canaliculatus_F_contig1339:2017..2295Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1339 2018..2295 -
1622929077.1516001-CDS-H-canaliculatus_F_contig1339:2451..25581622929077.1516001-CDS-H-canaliculatus_F_contig1339:2451..2558Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1339 2452..2558 -
1696845670.9887016-CDS-H-canaliculatus_F_contig1339:2451..25581696845670.9887016-CDS-H-canaliculatus_F_contig1339:2451..2558Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1339 2452..2558 -
1622929077.1644568-CDS-H-canaliculatus_F_contig1339:5602..56911622929077.1644568-CDS-H-canaliculatus_F_contig1339:5602..5691Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1339 5603..5691 -
1696845670.999255-CDS-H-canaliculatus_F_contig1339:5602..56911696845670.999255-CDS-H-canaliculatus_F_contig1339:5602..5691Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1339 5603..5691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1339.2753.1

>prot_H-canaliculatus_F_contig1339.2753.1 ID=prot_H-canaliculatus_F_contig1339.2753.1|Name=mRNA_H-canaliculatus_F_contig1339.2753.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=158bp
MRWIFWVSTAVLVGVVSTGLSRNAGTKLVRVRPQEGCLRSYANVAGSQEQ
QPQDLICCTERVDDEGDCGMASYGVRTAQNKSLVCPPPGMRGGRRRRSSA
PILSQISMWKEVTPTARVLVFAKMFDLGSSRTMHRFRIRNPPRREGKSAV
KVACSSR*
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mRNA from alignment at H-canaliculatus_F_contig1339:1966..5837-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1339.2753.1 ID=mRNA_H-canaliculatus_F_contig1339.2753.1|Name=mRNA_H-canaliculatus_F_contig1339.2753.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3872bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1339:1966..5837- (Hapterophycus canaliculatus Oshoro5f female)
GTAGGACAGGAGGACAGGCCTCCCGCAAAAAGGAAGCTGTTTCGCCAGCG
AATAAGGACACGGTACCGGCTGCGTTAGGAGCAGGTGTCTGCTGGTACGA
ACTCTCTCGCCGCGAAGGCCACCATCTCGACAGCAGTCCTGCCAAAATGC
GGTGGATCTTCTGGGTGTCGACTGCTGTGCTCGTCGGCGTAGTCTCAACG
GGACTGTCTCGAAATGCCGGGACCAAGCTTGTCAGGTGTGCGCTTTCGGA
AGCCAGATAAATTCCCACGTTTCGGGCAAGTGGCGGTATCGTTCGTGATT
GTCTTTCTGCATTCGGAGCGTACATATGCCCTACGCCTGGCCAAGAATCG
GGACTGGGGGAGGAAGGGGCAGGAGTCCTTGCGGCATCGAGGGCGAACGA
GCAGTAAATGCTCCACAACACCCAAAGCTATGGCAGTGAATGATGAGCAG
AAAAACCCAACCCCCACCGACAGTTCAAGTCAATTCCAACGGCAAAGGTC
TCAAGGCGAAGGCATATCCCTTTGCCGTTGCCTGCTACACCTCGCTGTGC
GCGTGGAGCGTGGAAGACGGTTGCAACTGCGACGATGACAAGCTCTTCAA
GAATGTGGCTTGAGTCTCCCGACCCAACAGCATGTTGATCTCGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCA
AAGCTCCTTCCGGCAAATCTGCTGCCACGCATACATTGGAGCGATTGGTG
TTCGCCTTTGAGGCCGCAACAGTCGTGAAGACGACACCACTCGCGCGAAT
CGGCCGACAGCGTGCCGAAACGGGTCGACAGAGATGCTCTCCGCAGGCAG
CACACGCACCGCTGCTATCGCCGATTTTTAAAGGTCAAAGACTGAAAACG
GTGTACCGGGGGGGATTGGCGGCAGAAGTCGGCACAGGTGAAAACTACCC
TTTAATGTCCTCCCATGCTGGTACCTGAGTGGCCAAACCCCTCCTCTGCC
GACTCTTGGCGGAGGTTCGTGTTCGATAGGTACGCCGCGACCGGGCTTTT
CTGTTTGAGTTTCACCGTTTTTTTACGCCCACCTCGTGACGCCAAAAGAG
AACTCCTGCGCACGGACTCCTCCGCCTGATGTAACTGTTTTACCTATCAA
ATCCATGGTGTACGTCACGAGGAAGTCAACCATCATCAACATGCGTCAGT
TATTCAGCCTTTCCACACGTCGATCGGCAGGGCAGCAGCAAACAGCTCGC
TCTGTGCGTGCGCCACTCACTGGTTACGACGATGCCCCGCCGCGAACGGT
TGCCAGCTGGCCGCGTCGCCCAAATCTCGCATACAGTCCCGCCCCGTGTG
TCGATCATGTCTCACATGCGAAACACACACACAGCGCACACCACACACCA
CACACACCACGCGATCCACCGCCGAACACGACTAAAACATACTTCGTAGG
ATGCGGCACCTCACACGACGACATGGCATCATCTCAGTGTACGCTACTAC
TGCCAAACGTTGGTAGATCGTAGGGATGGATAGCAAAAGATGGGGGCTGT
CATTGGCGGCCCCGGTAGCTCACCGCACTGTGCCGCGGTCGATAAGCTCG
CGCGCCAGTTTCATCTCGTGGAGAGGTCAGAAAAATGAGCGAGGTGGTTC
GCCGCATAGTGTGTGAGGTGTGTGCGTTTTGCATTTGACCCACTCGGACG
GGCGGGACTGTCAGCTCGAGGGCACGTGCGTGAGATTTCGGCGACGCGGA
CTGACAACCGTTGGCGGCGGGGTGTCGTCGCGACCAGTGAGTGGCGCATG
CACAGAGCAAGCTCTTTGTTGCTGCATGTGCAACTCCCCGCCGATCGATG
TGTGGAAAGGCCCAACAAGAGGTCTGACGCATATCGATGATTCACTTCCT
CGTGACGTACACCAGGGAGTTGCGAGGCGAAACAGTTGCATCGAGCGGAG
AAGTCCTTGCGTTGGAGTTCACTTTGGCGTCAGAGAACGATGAGGAGGGC
ATAAAAAAAATGTGAAACCCAAACAGAAAAGACGGGTCGCGGTACAATAC
CTCTCGAACTTTTGCCAAAAGTCGGCTAGGAGAGGTTTGGCCTTTTGTTT
CAGCACGGGGGTACATTAAAGGGCCGATTTCGCCTGTAACGACTTATGCC
GCCTTAACCCCCCGGTAAACCGTTTTCTGCCGTTGACCTACTTTAAACTT
TGAAGGTCTCCGCAGCAGCAAACAGGTGTTACAGCGTCTGCCCGAAGTTG
GAAAAATAAAACTCTTCGGAGTACTGACTCGAATTTGAAAAGCTGAATTA
AGTATGGCTTTTGCGATATCTAGAGAGAAGCAGAACCAGCATCGGTGAAC
GGACGAAAGTTGGCCATCTCAGGCCATGGATACATGTGTGTGTTGTGTCG
GCCGGCGTTTGCAGACTTTTACTTCTGGCGTACACTTCTCTGCGCGCCGT
GATAGCCTGCATGGTGGCTTCGTGAAGGGTATTGCGTATTGCATACATCG
TGGCATGTGTACGGCTGTACATCAGTCGACTCCGGGTATGCGTCCAAGCA
TCGTCCTTTGAAACGGGCTGAACGGCCGGGCTGCAGCAGCGGTTTTCGTT
TTTTCTCTTGACCGCGGGACCCCCATTTACGGGGTCTTGATTCATTTTGT
AGAATGAAATTGGCCCATAAAGTAGATGATGGAGCCCTTGGACGTCTTCG
TCTAACGGTTGCAACATGCGAACCCAACCCGTTTGCTGGGATTTCGAACC
CCGGTGGTGGTCGAGCCTTTTTCGATCACGTACATCTCCCCCTTGACAGA
AAAAAGGGCTGTGTGACGTGAGCGACCATGAGCGGTCAACCTTATCAGCG
AAAATGCTCCATACTGTATCCCATCCCTTCCCCAATACCAAAGGACAACA
ACAAACCAAATATCTTTAGAAGTATATATATATATATAATCTGTTGGCAT
GGCATCACGTGGTACTCTTCAAAATGCAAGTTTTAGTATCTACGCGAGTC
TACGCGCAGCGTCTCTGTTGCATCGAAGTGATGCCTCCTGCAATTGGAGG
CGTAGCTCTGCGATTCGACCGGTCCACGGTCGAACGCGCATGTTCAACTA
TGTCATATTTCTGACCCGTTAGGCTGAAATCGAGCGCAGTGCGTGATCTT
GTGAAACGTTGACAGGGTGGGCAAAGAATCATTAGACCGAATGCTCATCG
TGGTGTGCCCTCGGCTGGTGGTGGCGGTGGCTGCTGAAGCTCTTGCCCTC
GTGCTGCTGCTTCTTTTTACTTAATGTAGAGTACGACCTCAGGAGGGATG
CCTTCGGAGCTACGCCAACGTCGCCGGCTCGCAAGAGCAGCAGCCACAGG
ACCTGATTTGCTGCACTGAACGCGTGGACGATGAAGGTGTGTATCGGCAT
CCGAAACGTCTGTCGGGTGGCCACGAAAGAAAATGTTCTTCTTCGTAGAT
TGTTGTGCTACGTTCTCTCTGGAACAGACAGCTTGTTCTCCAGGGTGTTT
TGCCCTGAGCTGTCTTACTTCTGAACTCTGGACTTGTTGTAGGTGACTGC
GGTATGGCTTCTTACGGAGTAAGGACTGCCCAGAACAAGTCCTTGGTCTG
CCCACCCCCCGGAATGAGAGGCGGTAGAAGGCGACGCAGTTCAGCACCGA
TTTTATCGCAAATCAGCATGTGGAAGGAGGTAACACCAACTGCGAGAGTT
CTTGTTTTTGCAAAAATGTTCGACCTCGGGAGCTCCAGGACGATGCATCG
TTTTAGGATTCGTAATCCGCCTCGTAGAGAAGGAAAATCTGCCGTGAAGG
TCGCTTGTTCGAGCCGATGAAGTTCAGGGGAAGGGCGGCAAGCACGTTCT
CCTTGCGTCGATCGTTTGCGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1339:1966..5837-

>mRNA_H-canaliculatus_F_contig1339.2753.1 ID=mRNA_H-canaliculatus_F_contig1339.2753.1|Name=mRNA_H-canaliculatus_F_contig1339.2753.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=948bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1339:1966..5837- (Hapterophycus canaliculatus Oshoro5f female)
ATGCGGTGGATCTTCTGGGTGTCGACTGCTGTGCTCGTCGGCGTAGTCTC
AACGGGACTGTCTCGAAATGCCGGGACCAAGCTTGTCAGATGCGGTGGAT
CTTCTGGGTGTCGACTGCTGTGCTCGTCGGCGTAGTCTCAACGGGACTGT
CTCGAAATGCCGGGACCAAGCTTGTCAGAGTACGACCTCAGGAGGGATGC
CTTCGGAGCTACGCCAACGTCGCCGGCTCGCAAGAGCAGCAGCCACAGGA
CCTGATTTGCTGCACTGAACGCGTGGACGATGAAGAGTACGACCTCAGGA
GGGATGCCTTCGGAGCTACGCCAACGTCGCCGGCTCGCAAGAGCAGCAGC
CACAGGACCTGATTTGCTGCACTGAACGCGTGGACGATGAAGGTGACTGC
GGTATGGCTTCTTACGGAGTAAGGACTGCCCAGAACAAGTCCTTGGTCTG
CCCACCCCCCGGAATGAGAGGCGGTAGAAGGCGACGCAGTTCAGCACCGA
TTTTATCGCAAATCAGCATGTGGAAGGAGGTAACACCAACTGCGAGAGTT
CTTGTTTTTGCAAAAATGTTCGACCTCGGGAGCTCCAGGACGATGCATCG
TTTTAGGATTCGTAATCCGCCTCGTAGAGAAGGAAAATCTGCCGTGAAGG
TCGCTTGTTCGAGCCGATGAGTGACTGCGGTATGGCTTCTTACGGAGTAA
GGACTGCCCAGAACAAGTCCTTGGTCTGCCCACCCCCCGGAATGAGAGGC
GGTAGAAGGCGACGCAGTTCAGCACCGATTTTATCGCAAATCAGCATGTG
GAAGGAGGTAACACCAACTGCGAGAGTTCTTGTTTTTGCAAAAATGTTCG
ACCTCGGGAGCTCCAGGACGATGCATCGTTTTAGGATTCGTAATCCGCCT
CGTAGAGAAGGAAAATCTGCCGTGAAGGTCGCTTGTTCGAGCCGATGA
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