mRNA_H-canaliculatus_F_contig1339.2757.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1339.2757.1
Unique NamemRNA_H-canaliculatus_F_contig1339.2757.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1339.2757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1339contigH-canaliculatus_F_contig1339:26658..27243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size515
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1339.2757.1prot_H-canaliculatus_F_contig1339.2757.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1339 26736..27205 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929076.7144687-UTR-H-canaliculatus_F_contig1339:26657..267351622929076.7144687-UTR-H-canaliculatus_F_contig1339:26657..26735Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1339 26658..26735 -
1696845670.8550744-UTR-H-canaliculatus_F_contig1339:26657..267351696845670.8550744-UTR-H-canaliculatus_F_contig1339:26657..26735Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1339 26658..26735 -
1622929076.7696128-UTR-H-canaliculatus_F_contig1339:27205..272431622929076.7696128-UTR-H-canaliculatus_F_contig1339:27205..27243Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1339 27206..27243 -
1696845670.8917184-UTR-H-canaliculatus_F_contig1339:27205..272431696845670.8917184-UTR-H-canaliculatus_F_contig1339:27205..27243Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1339 27206..27243 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929076.7297244-CDS-H-canaliculatus_F_contig1339:26735..268821622929076.7297244-CDS-H-canaliculatus_F_contig1339:26735..26882Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1339 26736..26882 -
1696845670.8669343-CDS-H-canaliculatus_F_contig1339:26735..268821696845670.8669343-CDS-H-canaliculatus_F_contig1339:26735..26882Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1339 26736..26882 -
1622929076.748509-CDS-H-canaliculatus_F_contig1339:26953..272051622929076.748509-CDS-H-canaliculatus_F_contig1339:26953..27205Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1339 26954..27205 -
1696845670.8781374-CDS-H-canaliculatus_F_contig1339:26953..272051696845670.8781374-CDS-H-canaliculatus_F_contig1339:26953..27205Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1339 26954..27205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1339.2757.1

>prot_H-canaliculatus_F_contig1339.2757.1 ID=prot_H-canaliculatus_F_contig1339.2757.1|Name=mRNA_H-canaliculatus_F_contig1339.2757.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=133bp
MTSSGYGHDQKRVDGKLSHEKQVYQDWTCAGLGTMGIRRIRARRWGALVL
GFHCARNRSLIPRVYNVPVSGHFPNSFNLRTLSTVLDTQWRTDYIRFNLL
SVIDIYTSRSHKLARSHFSQALCKNMQKTSDA*
back to top

mRNA from alignment at H-canaliculatus_F_contig1339:26658..27243-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1339.2757.1 ID=mRNA_H-canaliculatus_F_contig1339.2757.1|Name=mRNA_H-canaliculatus_F_contig1339.2757.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=586bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1339:26658..27243- (Hapterophycus canaliculatus Oshoro5f female)
GTGGCGTGGGGTGTGCGTGACCAGAAACGGGTAAGGAAATGACCAGTTCT
GGGTACGGCCATGACCAGAAACGGGTAGACGGAAAGTTGAGTCACGAGAA
ACAGGTATACCAAGATTGGACGTGTGCTGGGTTGGGTACGATGGGTATTC
GGCGAATCAGAGCGCGCCGCTGGGGTGCTCTCGTACTTGGATTTCACTGT
GCCCGAAATCGGTCACTCATACCCCGGGTGTACAACGTACCCGTTTCTGG
TCATTTTCCAAACAGTTTCAACCTGCGAACATTATCGACCGTTTTTCTCA
CAAAAACAGCATACAAATTCACGGAGACTTTTAGAATACCTTGAATATCG
GTTGAGACCAGGTCCTCGACACTCAATGGAGAACAGATTATATCCGCTTT
AACTTACTTTCTGTTATTGACATATATACAAGCCGAAGCCACAAACTCGC
TCGAAGCCACTTTAGTCAAGCTTTGTGCAAGAACATGCAGAAGACAAGCG
ACGCCTAGAAGCACTTCGACTACCTGTCAGCAGCAACAGACACTGACATA
CTGTAGCATGGAGCGGAGGGATCACACACGAAAAGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1339:26658..27243-

>mRNA_H-canaliculatus_F_contig1339.2757.1 ID=mRNA_H-canaliculatus_F_contig1339.2757.1|Name=mRNA_H-canaliculatus_F_contig1339.2757.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=798bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1339:26658..27243- (Hapterophycus canaliculatus Oshoro5f female)
ATGACCAGTTCTGGGTACGGCCATGACCAGAAACGGGTAGACGGAAAGTT
GAGTCACGAGAAACAGGTATACCAAGATTGGACGTGTGCTGGGTTGGGTA
CGATGGGTATTCGGCGAATCAGAGCGCGCCGCTGGGGTGCTCTCGTACTT
GGATTTCACTGTGCCCGAAATCGGTCACTCATACCCCGGGTGTACAACGT
ACCCGTTTCTGGTCATTTTCCAAACAGTTTCAACCTGCGAACATTATCGA
CCATGACCAGTTCTGGGTACGGCCATGACCAGAAACGGGTAGACGGAAAG
TTGAGTCACGAGAAACAGGTATACCAAGATTGGACGTGTGCTGGGTTGGG
TACGATGGGTATTCGGCGAATCAGAGCGCGCCGCTGGGGTGCTCTCGTAC
TTGGATTTCACTGTGCCCGAAATCGGTCACTCATACCCCGGGTGTACAAC
GTACCCGTTTCTGGTCATTTTCCAAACAGTTTCAACCTGCGAACATTATC
GACCGTCCTCGACACTCAATGGAGAACAGATTATATCCGCTTTAACTTAC
TTTCTGTTATTGACATATATACAAGCCGAAGCCACAAACTCGCTCGAAGC
CACTTTAGTCAAGCTTTGTGCAAGAACATGCAGAAGACAAGCGACGCCTA
GGTCCTCGACACTCAATGGAGAACAGATTATATCCGCTTTAACTTACTTT
CTGTTATTGACATATATACAAGCCGAAGCCACAAACTCGCTCGAAGCCAC
TTTAGTCAAGCTTTGTGCAAGAACATGCAGAAGACAAGCGACGCCTAG
back to top