mRNA_H-canaliculatus_F_contig1337.2743.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1337.2743.1
Unique NamemRNA_H-canaliculatus_F_contig1337.2743.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1337.2743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1337contigH-canaliculatus_F_contig1337:25556..26025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size172
Cds size165
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1337.2743.1prot_H-canaliculatus_F_contig1337.2743.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1337 25563..26025 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929074.8533735-UTR-H-canaliculatus_F_contig1337:25555..255621622929074.8533735-UTR-H-canaliculatus_F_contig1337:25555..25562Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1337 25556..25562 +
1696845670.1905622-UTR-H-canaliculatus_F_contig1337:25555..255621696845670.1905622-UTR-H-canaliculatus_F_contig1337:25555..25562Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1337 25556..25562 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929074.866541-CDS-H-canaliculatus_F_contig1337:25562..256411622929074.866541-CDS-H-canaliculatus_F_contig1337:25562..25641Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1337 25563..25641 +
1696845670.1993926-CDS-H-canaliculatus_F_contig1337:25562..256411696845670.1993926-CDS-H-canaliculatus_F_contig1337:25562..25641Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1337 25563..25641 +
1622929074.8800564-CDS-H-canaliculatus_F_contig1337:25939..260251622929074.8800564-CDS-H-canaliculatus_F_contig1337:25939..26025Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1337 25940..26025 +
1696845670.2077692-CDS-H-canaliculatus_F_contig1337:25939..260251696845670.2077692-CDS-H-canaliculatus_F_contig1337:25939..26025Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1337 25940..26025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1337.2743.1

>prot_H-canaliculatus_F_contig1337.2743.1 ID=prot_H-canaliculatus_F_contig1337.2743.1|Name=mRNA_H-canaliculatus_F_contig1337.2743.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=55bp
MRIRVGERITFCSQRRKLFPANARERGAMGSWCPPTNSIRSVSKTTRNPP
AAVTG
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mRNA from alignment at H-canaliculatus_F_contig1337:25556..26025+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1337.2743.1 ID=mRNA_H-canaliculatus_F_contig1337.2743.1|Name=mRNA_H-canaliculatus_F_contig1337.2743.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=470bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1337:25556..26025+ (Hapterophycus canaliculatus Oshoro5f female)
CTGCCGCATGCGAATCCGTGTGGGGGAACGAATCACCTTCTGCAGCCAGC
GCCGAAAATTGTTCCCTGCAAATGCCCGGGAGAGAGGTAAGCGCGCGCCT
GCCTTGCAATATGATCGGAACAAGGTCCATCAACGACGTGACGTGTTTAT
CGACAAATCAAAATACCTTCGTCTCGGTTTCGGCAGTAACAGCGGGAGTG
CGTGCAAATGTTTCTGTGACGATTTACATGCCACCATGGATCGATCGATG
TTCATGTCGTTAAACCGGAAGTCGGCTCTTCAATCATCCAAGGGTCTGCG
AACTCGTCGTTCGTATGGCTGTGCAGGCACCTTCTCGACCTCCAACCAAA
GGCGTCAACCTTCTGCCTCCTACTACACTGAAAGGTGCGATGGGAAGCTG
GTGCCCTCCAACCAACTCCATCCGTAGCGTTTCGAAAACGACAAGAAACC
CTCCTGCGGCCGTAACGGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1337:25556..26025+

>mRNA_H-canaliculatus_F_contig1337.2743.1 ID=mRNA_H-canaliculatus_F_contig1337.2743.1|Name=mRNA_H-canaliculatus_F_contig1337.2743.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=330bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1337:25556..26025+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGAATCCGTGTGGGGGAACGAATCACCTTCTGCAGCCAGCGCCGAAA
ATTGTTCCCTGCAAATGCCCGGGAGAGAGATGCGAATCCGTGTGGGGGAA
CGAATCACCTTCTGCAGCCAGCGCCGAAAATTGTTCCCTGCAAATGCCCG
GGAGAGAGGTGCGATGGGAAGCTGGTGCCCTCCAACCAACTCCATCCGTA
GCGTTTCGAAAACGACAAGAAACCCTCCTGCGGCCGTAACGGGTGTGCGA
TGGGAAGCTGGTGCCCTCCAACCAACTCCATCCGTAGCGTTTCGAAAACG
ACAAGAAACCCTCCTGCGGCCGTAACGGGT
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