mRNA_H-canaliculatus_F_contig13340.2729.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13340.2729.1
Unique NamemRNA_H-canaliculatus_F_contig13340.2729.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13340.2729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13340contigH-canaliculatus_F_contig13340:1551..2307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size757
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13340.2729.1prot_H-canaliculatus_F_contig13340.2729.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13340 1816..2262 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929073.5695667-UTR-H-canaliculatus_F_contig13340:1550..18151622929073.5695667-UTR-H-canaliculatus_F_contig13340:1550..1815Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13340 1551..1815 +
1696845669.594108-UTR-H-canaliculatus_F_contig13340:1550..18151696845669.594108-UTR-H-canaliculatus_F_contig13340:1550..1815Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13340 1551..1815 +
1622929073.5964208-UTR-H-canaliculatus_F_contig13340:2262..23071622929073.5964208-UTR-H-canaliculatus_F_contig13340:2262..2307Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13340 2263..2307 +
1696845669.6113474-UTR-H-canaliculatus_F_contig13340:2262..23071696845669.6113474-UTR-H-canaliculatus_F_contig13340:2262..2307Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13340 2263..2307 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929073.5813086-CDS-H-canaliculatus_F_contig13340:1815..22621622929073.5813086-CDS-H-canaliculatus_F_contig13340:1815..2262Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13340 1816..2262 +
1696845669.6029053-CDS-H-canaliculatus_F_contig13340:1815..22621696845669.6029053-CDS-H-canaliculatus_F_contig13340:1815..2262Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13340 1816..2262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13340.2729.1

>prot_H-canaliculatus_F_contig13340.2729.1 ID=prot_H-canaliculatus_F_contig13340.2729.1|Name=mRNA_H-canaliculatus_F_contig13340.2729.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=149bp
MWLGWESLREKKESFRRMCNYLKRNENTIVPTPLYRKRKTTIFAHHQSWF
SPQLVLHIRFPNVSPQNMGVGDTRVFSTMPQSAISCFETTRSKRSSIQTH
DRSSQNSAWSFSTHQMTGSPAGTQIKPMIQESSVRDSGALLVGCLRQP*
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mRNA from alignment at H-canaliculatus_F_contig13340:1551..2307+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13340.2729.1 ID=mRNA_H-canaliculatus_F_contig13340.2729.1|Name=mRNA_H-canaliculatus_F_contig13340.2729.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=757bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13340:1551..2307+ (Hapterophycus canaliculatus Oshoro5f female)
GGAACCTGTGGTGGGGTCGAGTAGTCCTGGACAAGTGGTTGATGGTCAAC
TGCAGTATTTAGGGTGCCCTAACCCTGAACCAACAGGGTGAGCGGCGGGA
AGGCACCTGTTCTATTTTGGCTTTGTCCACGCGTGCACGACAACAACCAT
CTCAACGACCGCGAGCGGATGTTGAGGCAAACAAAATGGACTACGATAAA
GCGTGTCGTGTAATTCGCCTTGGGCACCCAAGGACGAAGGACATCCATAT
TCGTAGTATGTTAAAATGTGGTTGGGTTGGGAAAGCTTACGCGAGAAAAA
AGAATCCTTCCGCCGCATGTGCAACTACTTGAAGCGCAACGAAAACACCA
TCGTTCCGACTCCTCTTTACCGAAAACGAAAGACTACGATATTTGCACAC
CACCAATCTTGGTTCTCTCCGCAGCTTGTGTTACACATCCGCTTCCCGAA
CGTATCACCACAAAATATGGGCGTGGGCGACACACGCGTTTTCAGCACCA
TGCCCCAGTCGGCGATATCGTGCTTTGAAACGACGCGCTCAAAACGATCA
AGCATTCAAACACATGATAGGAGTTCCCAAAATTCTGCGTGGTCTTTCAG
CACACACCAGATGACTGGCTCCCCCGCTGGAACCCAAATAAAGCCAATGA
TACAAGAGTCCTCTGTGAGAGACTCTGGAGCCCTCCTCGTCGGCTGCTTG
CGCCAGCCCTGACGCACACAGCTAAAATTTTACTGGGAAGCTGAAACGCG
ATTCCCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13340:1551..2307+

>mRNA_H-canaliculatus_F_contig13340.2729.1 ID=mRNA_H-canaliculatus_F_contig13340.2729.1|Name=mRNA_H-canaliculatus_F_contig13340.2729.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=894bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13340:1551..2307+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGGTTGGGTTGGGAAAGCTTACGCGAGAAAAAAGAATCCTTCCGCCG
CATGTGCAACTACTTGAAGCGCAACGAAAACACCATCGTTCCGACTCCTC
TTTACCGAAAACGAAAGACTACGATATTTGCACACCACCAATCTTGGTTC
TCTCCGCAGCTTGTGTTACACATCCGCTTCCCGAACGTATCACCACAAAA
TATGGGCGTGGGCGACACACGCGTTTTCAGCACCATGCCCCAGTCGGCGA
TATCGTGCTTTGAAACGACGCGCTCAAAACGATCAAGCATTCAAACACAT
GATAGGAGTTCCCAAAATTCTGCGTGGTCTTTCAGCACACACCAGATGAC
TGGCTCCCCCGCTGGAACCCAAATAAAGCCAATGATACAAGAGTCCTCTG
TGAGAGACTCTGGAGCCCTCCTCGTCGGCTGCTTGCGCCAGCCCTGAATG
TGGTTGGGTTGGGAAAGCTTACGCGAGAAAAAAGAATCCTTCCGCCGCAT
GTGCAACTACTTGAAGCGCAACGAAAACACCATCGTTCCGACTCCTCTTT
ACCGAAAACGAAAGACTACGATATTTGCACACCACCAATCTTGGTTCTCT
CCGCAGCTTGTGTTACACATCCGCTTCCCGAACGTATCACCACAAAATAT
GGGCGTGGGCGACACACGCGTTTTCAGCACCATGCCCCAGTCGGCGATAT
CGTGCTTTGAAACGACGCGCTCAAAACGATCAAGCATTCAAACACATGAT
AGGAGTTCCCAAAATTCTGCGTGGTCTTTCAGCACACACCAGATGACTGG
CTCCCCCGCTGGAACCCAAATAAAGCCAATGATACAAGAGTCCTCTGTGA
GAGACTCTGGAGCCCTCCTCGTCGGCTGCTTGCGCCAGCCCTGA
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