mRNA_H-canaliculatus_F_contig1333.2721.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1333.2721.1 vs. uniprot
Match: D7G914_ECTSI (ER membrane protein complex subunit 10 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G914_ECTSI) HSP 1 Score: 243 bits (619), Expect = 7.550e-77 Identity = 126/166 (75.90%), Postives = 144/166 (86.75%), Query Frame = 2
Query: 380 IQELIANDGLYLIRVSTGESSAQNVVAAIPACQLRLASFREEITLHVERDGLIVGVDYKAPVGPLASTRDCAKMPVPESYEVATKIVVVRAASAQSVPLQVLANSPPPGLANLKEQTSTKDEKASGSQSLLVRYWYIFVPCLLLYMFSASGPAEQGGQAAPTTSGG 877
++ELIANDGLYLIRV+T ESS Q+VVAA+ ACQLRLASFREEITLHVERDG+IVGVDYK+ VGPLASTR+C KMPV E EV TK+VVVRAASAQSVPLQVL NSPPPGL+ LKEQ TKD KA+G+QSLLV+YWYIF+PC+LL+MFSA +QGG A P +GG
Sbjct: 68 MEELIANDGLYLIRVATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSLVGPLASTRNCTKMPVAEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGNQSLLVKYWYIFLPCVLLFMFSAP---DQGGAATPPAAGG 230
BLAST of mRNA_H-canaliculatus_F_contig1333.2721.1 vs. uniprot
Match: A0A7S4D4Q0_HETAK (ER membrane protein complex subunit 10 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4Q0_HETAK) HSP 1 Score: 95.5 bits (236), Expect = 1.720e-19 Identity = 56/120 (46.67%), Postives = 74/120 (61.67%), Query Frame = 2
Query: 371 NRHIQELIANDGLYLIRVSTGESSAQN--VVAAIPACQLRLASFREEITLHVERDGLIVGVDYKAPVGPLASTRDCAKMPVPESYEVATKIVVVRAASAQSVPLQVLANSPPPGLANLKE 724
I++LIAN G Y IR+ + ++ + V+AAI AC L A+FREEI LH++ I+G+ Y AP LA RDC P+PE + TKI V A+ QSVPLQ A PPPGLA L++
Sbjct: 97 RNQIKDLIANGGFYRIRLHSNPTNPDSPMVMAAISACDLHKANFREEIVLHLDPHQNIIGMTYSAPSSVLA--RDCHSKPLPEDIKFDTKIKVAEASIGQSVPLQAQAARPPPGLAGLQK 214
BLAST of mRNA_H-canaliculatus_F_contig1333.2721.1 vs. uniprot
Match: A0A7S2V3X6_9STRA (ER membrane protein complex subunit 10 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3X6_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.810e-17 Identity = 70/200 (35.00%), Postives = 96/200 (48.00%), Query Frame = 2
Query: 356 LPYAMNRHIQELIANDGLYLIRVSTGESSAQNVVAAIPACQLRLASFREEITLHVERDGLI--------------------VGVDYKAPVGPLASTRD-------CAKMPVPESYEVATKIVVVRAASAQSVPLQVLANSPPPGLANL-KEQTSTKDEKASG-SQSLLVRYWYIFVPCLLLYMFS------ASGPAEQGG 850
LP ++EL+ N G Y +R+ G A V A++ ACQL ASFREEITL ++ + +G+ Y A PLA+ C+ +P S E T + AQS+P+QV A SPPPG+A L K Q +D K +QS L +YWYI VP +LL++ + A G QGG
Sbjct: 19 LPDHQIEQLEELVRNGGYYRLRLRMGPD-APWVGASVSACQLHRASFREEITLQLDLVSPVAGGAXXXXXXXXXXXXXVEVLGLRYAAVPPPLATMLTTGAGALACSAAKLPSSVEFTTTLQSSLPTQAQSIPVQVTAGSPPPGVARLAKFQAQGEDGKGGQQNQSFLRKYWYIVVPLVLLFLMNPQQPEGAPGGGGQGG 217
BLAST of mRNA_H-canaliculatus_F_contig1333.2721.1 vs. uniprot
Match: A0A7S3P5G2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P5G2_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 4.710e-12 Identity = 51/170 (30.00%), Postives = 80/170 (47.06%), Query Frame = 2
Query: 386 ELIANDGLYLIR-VSTGESSAQNVVAAIPACQLRLASFREEITLHVERDGLIVGVDYKAPVGPLASTRDCAKMPVPESYEVATKIVVVRAASAQSVPLQVLANSPPPGLANLK---------------EQTSTKDEKA--SGSQSLLVRYWYIFVPCLLLYMFSASGPAE 841
E++ G Y ++ V G+++ V IPAC LR A+FR+EITL + G ++ + Y + PLA + C +P P+ + +K+ A S+ + PPPGL + E TK+EK +G RYWYI +P L+ M A+ P +
Sbjct: 95 EVMMMSGWYQVKLVEDGKTATVPVKTTIPACHLRRANFRDEITLSFGQQGHVMSLAYSPLISPLAP-KTCDDLPAPQEIQFNSKVEYETAVPGMSLKTILPNYQPPPGLKFISSKHKSPGSVGGDAKPEGFGTKEEKELDTGIMGFFRRYWYIILPIFLMQMMGATEPEQ 263
BLAST of mRNA_H-canaliculatus_F_contig1333.2721.1 vs. uniprot
Match: A0A7S3PTA5_9STRA (ER membrane protein complex subunit 10 n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PTA5_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 1.280e-8 Identity = 50/186 (26.88%), Postives = 94/186 (50.54%), Query Frame = 2
Query: 380 IQELIANDGLYLIRV--STGESSAQNVVAAIPACQLRLASFREEITLHVERDGLIVGVDYKAPVGPLASTRDCAK-MPVPESYEVATKIVVVRAASAQSVPLQ---------VLANSPPPGLANLKE-QTSTKD----EKASGSQSLLVRYWYIFVPCLLLYMFSASGPAEQG--GQAAPTTSGGR 880
+++L+ N+ LY +R+ + S+ +VA+IPACQ+ F+E H+++ G I + + +R+C++ + P+S + +K V A P + +AN PP ++E + +KD E+ + +QS + +YWY+F+P LL+ +F S + G GQ +GG+
Sbjct: 103 MKKLVENNRLYRVRIPLKPDDPSSPWLVASIPACQMLENDFKESFRFHLDKSGTITSFELSSKT----PSRECSQGLSFPKSVVLKSKAVASIPKEAHGAPKRGGLNDSKGAKVANMPPELQGVIEENKPKSKDGKEAEEEAENQSFVRKYWYLFLPMLLMSVFGGSPEPQAGAAGQGRSPPAGGQ 284
BLAST of mRNA_H-canaliculatus_F_contig1333.2721.1 vs. uniprot
Match: A0A7S2S2Z1_9STRA (ER membrane protein complex subunit 10 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S2Z1_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 9.610e-8 Identity = 45/162 (27.78%), Postives = 79/162 (48.77%), Query Frame = 2
Query: 389 LIANDGLYLIRVSTGESSAQNVVAAIPACQLRLASFREEITLHVERDGLIVGVDYKAPVGPLASTRDC--AKMPVPESYEVATKIVVVRAASAQSVPLQVLANSPPPG-----LANLKEQTSTKD--EKASGSQSLLVRYWYIFVPCLLLYMFSASGPAEQG 847
L+ N+G Y +R+ + + + A+IPAC L FRE + H++++ ++G D+ P+ TR C +K +S ++ +K Q VP + P G +A E+++ D EK L +YWY+F+P +L+ + GP E+G
Sbjct: 83 LLKNNGFYRVRIRSQFGDSW-LTASIPACVLAAGHFRENLRFHIDKNAALIGFDHI----PVVKTRGCDASKYLGLDSIKLVSKGSASLPQEGQHVPKNAIPVGIPQGSAGANVAQTMEKSAGGDSGEKQEEEPHFLRKYWYVFLPLVLISVLGP-GPPEEG 238 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1333.2721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1333.2721.1 >prot_H-canaliculatus_F_contig1333.2721.1 ID=prot_H-canaliculatus_F_contig1333.2721.1|Name=mRNA_H-canaliculatus_F_contig1333.2721.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=172bp MNRHIQELIANDGLYLIRVSTGESSAQNVVAAIPACQLRLASFREEITLHback to top mRNA from alignment at H-canaliculatus_F_contig1333:2007..5229+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1333.2721.1 ID=mRNA_H-canaliculatus_F_contig1333.2721.1|Name=mRNA_H-canaliculatus_F_contig1333.2721.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3223bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1333:2007..5229+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1333:2007..5229+ >mRNA_H-canaliculatus_F_contig1333.2721.1 ID=mRNA_H-canaliculatus_F_contig1333.2721.1|Name=mRNA_H-canaliculatus_F_contig1333.2721.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1032bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1333:2007..5229+ (Hapterophycus canaliculatus Oshoro5f female)back to top |