mRNA_H-canaliculatus_F_contig13324.2719.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13324.2719.1
Unique NamemRNA_H-canaliculatus_F_contig13324.2719.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13324.2719.1 vs. uniprot
Match: D8LDR2_ECTSI (Cas1_AcylT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDR2_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 4.670e-28
Identity = 51/65 (78.46%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 LPGRNIVVLGDSINRFVYWALVRSLGEETPMAHNTTVEKHSDFSWVASDGSGTHITFLWAPLVED 195
            L GRN+VV+GDS+NRFVYWALVRSLGE TPMAH+TT+EKHSDFSW ASD  GT  +FLWAP VED
Sbjct:  676 LKGRNVVVVGDSVNRFVYWALVRSLGEATPMAHDTTIEKHSDFSWQASDDWGTRFSFLWAPEVED 740
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BLAST of mRNA_H-canaliculatus_F_contig13324.2719.1 vs. uniprot
Match: A0A7S2UXX9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXX9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.070e-6
Identity = 26/66 (39.39%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:    1 LPGRNIVVLGDSINRFVYWALVRSLGEETPM-AHNTTVEKHSDFSWVASDGSGTHITFLWAPLVED 195
            L G+N+VV+GDS+ R  Y A++R LGE       N+   +H D  W +++G    + FLWAP ++D
Sbjct:   57 LNGKNVVVVGDSLARKTYQAILRLLGEANATDIPNSPELRHKDQHWKSANGV-QQVHFLWAPYIQD 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13324.2719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDR2_ECTSI4.670e-2878.46Cas1_AcylT domain-containing protein n=2 Tax=Ectoc... [more]
A0A7S2UXX9_9STRA2.070e-639.39Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13324contigH-canaliculatus_F_contig13324:18..212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.2e-23
Seed eggNOG ortholog2880.D8LDR2
KEGG koko:K03377
GOsGO:0000271,GO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005975,GO:0005976,GO:0006073,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009832,GO:0009834,GO:0009987,GO:0010033,GO:0010383,GO:0010410,GO:0010411,GO:0012505,GO:0016051,GO:0033692,GO:0033993,GO:0034637,GO:0034645,GO:0042221,GO:0042546,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0045491,GO:0045492,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0070589,GO:0070592,GO:0071554,GO:0071669,GO:0071704,GO:0071840,GO:0097305,GO:0098542,GO:1901576,GO:1901700,GO:1990937
EggNOG free text desc.N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity
EggNOG OGsKOG1699@1,KOG1699@2759
EC2.3.1.45
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929071.8347678-CDS-H-canaliculatus_F_contig13324:17..2121622929071.8347678-CDS-H-canaliculatus_F_contig13324:17..212Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13324 18..212 +
1696845668.847222-CDS-H-canaliculatus_F_contig13324:17..2121696845668.847222-CDS-H-canaliculatus_F_contig13324:17..212Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13324 18..212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13324.2719.1prot_H-canaliculatus_F_contig13324.2719.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13324 18..212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13324.2719.1

>prot_H-canaliculatus_F_contig13324.2719.1 ID=prot_H-canaliculatus_F_contig13324.2719.1|Name=mRNA_H-canaliculatus_F_contig13324.2719.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=65bp
LPGRNIVVLGDSINRFVYWALVRSLGEETPMAHNTTVEKHSDFSWVASDG
SGTHITFLWAPLVED
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mRNA from alignment at H-canaliculatus_F_contig13324:18..212+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13324.2719.1 ID=mRNA_H-canaliculatus_F_contig13324.2719.1|Name=mRNA_H-canaliculatus_F_contig13324.2719.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=195bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13324:18..212+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCCAGGCCGCAACATCGTGGTGCTCGGCGACTCCATTAACCGCTTCGT
CTACTGGGCGCTCGTGCGGAGCTTGGGAGAAGAGACCCCCATGGCCCACA
ACACCACCGTGGAGAAGCACAGTGATTTCTCATGGGTGGCCTCCGATGGT
TCCGGAACGCACATCACGTTCCTCTGGGCCCCCCTGGTGGAAGAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13324:18..212+

>mRNA_H-canaliculatus_F_contig13324.2719.1 ID=mRNA_H-canaliculatus_F_contig13324.2719.1|Name=mRNA_H-canaliculatus_F_contig13324.2719.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=390bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13324:18..212+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCCAGGCCGCAACATCGTGGTGCTCGGCGACTCCATTAACCGCTTCGT
CTACTGGGCGCTCGTGCGGAGCTTGGGAGAAGAGACCCCCATGGCCCACA
ACACCACCGTGGAGAAGCACAGTGATTTCTCATGGGTGGCCTCCGATGGT
TCCGGAACGCACATCACGTTCCTCTGGGCCCCCCTGGTGGAAGATCTCCC
AGGCCGCAACATCGTGGTGCTCGGCGACTCCATTAACCGCTTCGTCTACT
GGGCGCTCGTGCGGAGCTTGGGAGAAGAGACCCCCATGGCCCACAACACC
ACCGTGGAGAAGCACAGTGATTTCTCATGGGTGGCCTCCGATGGTTCCGG
AACGCACATCACGTTCCTCTGGGCCCCCCTGGTGGAAGAT
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