mRNA_H-canaliculatus_F_contig1332.2713.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1332.2713.1
Unique NamemRNA_H-canaliculatus_F_contig1332.2713.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1332.2713.1 vs. uniprot
Match: A0A6H5KQR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR5_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 8.520e-21
Identity = 111/165 (67.27%), Postives = 124/165 (75.15%), Query Frame = 1 
Query:  976 DAAVASVPD-PFRTPTPTAVAATPFWGEPGESPTKQQRNSTVGVVTKNPRQQQXXXXXXXXXXXXXXXXXPQCLFRGCSRRSTHAAPGEKPTYCAEHRIAGMSNAVASSAVTPSGGVSKRNRXXXXXXXXXXXXXXXXXXXXXXXXXKMDNYVDVKHPRCESELG 1467
            +AA+A+VP+ P+RTPT  A AATPFWGEP ESP KQ                  XXXXXXXXXXXXXXXX  C+F GCSRR+THAA GE+P +C+EHR+ GM++  A    TP G  SKRNRXXXXXXXXXXXXXXXXXXXXXXXXX  DNYVDVKHPRCESELG
Sbjct:  280 EAAIAAVPEEPYRTPT-RAAAATPFWGEPDESPIKQXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXCMFGGCSRRATHAARGERPGHCSEHRLPGMADTTA--VATPGG--SKRNRXXXXXXXXXXXXXXXXXXXXXXXXXXXDNYVDVKHPRCESELG 435
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1332.2713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQR5_9PHAE8.520e-2167.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1332contigH-canaliculatus_F_contig1332:763..3717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1554
Cds size1554
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1332.2713.1prot_H-canaliculatus_F_contig1332.2713.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1332 763..3717 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929071.2135317-CDS-H-canaliculatus_F_contig1332:762..8761622929071.2135317-CDS-H-canaliculatus_F_contig1332:762..876Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1332 763..876 -
1696845668.6193352-CDS-H-canaliculatus_F_contig1332:762..8761696845668.6193352-CDS-H-canaliculatus_F_contig1332:762..876Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1332 763..876 -
1622929071.2341347-CDS-H-canaliculatus_F_contig1332:2217..26581622929071.2341347-CDS-H-canaliculatus_F_contig1332:2217..2658Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1332 2218..2658 -
1696845668.6295412-CDS-H-canaliculatus_F_contig1332:2217..26581696845668.6295412-CDS-H-canaliculatus_F_contig1332:2217..2658Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1332 2218..2658 -
1622929071.2547057-CDS-H-canaliculatus_F_contig1332:2718..37171622929071.2547057-CDS-H-canaliculatus_F_contig1332:2718..3717Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1332 2719..3717 -
1696845668.6397145-CDS-H-canaliculatus_F_contig1332:2718..37171696845668.6397145-CDS-H-canaliculatus_F_contig1332:2718..3717Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1332 2719..3717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1332.2713.1

>prot_H-canaliculatus_F_contig1332.2713.1 ID=prot_H-canaliculatus_F_contig1332.2713.1|Name=mRNA_H-canaliculatus_F_contig1332.2713.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=518bp
SSSSGGGGGWWPTRSTTLAQSSVHTEATRLGGGNIGSSGSSNMSVSVPDA
ISDNDLAYPSRTQQSTAAILSGGSQRQQHERKPWLKPVASLLRGIPQPKL
QRDWSDGGGGVVPVGRFTPANPAAAATPAVHMVPQQDGQLFSHLGWRGNN
AAGGTTTAAVVESGGANNTSSEKYARFERQPHHHHLQQQHKQLHVLALGQ
DRSRSVSPRIVRGPLGGAVSPGRSRPQQQQQQQQPLSSPSNRRRDDLRAA
RNSGMHHRSNSLHDHAEEARRLSAHNDVPWRLGGGFHDNGGDARRQSYFD
RPSPYQQHRRQRHQRGGHFFPTAAADAAVASVPDPFRTPTPTAVAATPFW
GEPGESPTKQQRNSTVGVVTKNPRQQQRQQQQQEKQQQQEKQQQPQCLFR
GCSRRSTHAAPGEKPTYCAEHRIAGMSNAVASSAVTPSGGVSKRNRCLMP
GCSKPPRYALPGHKAEYCTLHKMDNYVDVKHPRCESELGCVRQPTFGWEG
EKARFCSAHKIENMLDVK
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mRNA from alignment at H-canaliculatus_F_contig1332:763..3717-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1332.2713.1 ID=mRNA_H-canaliculatus_F_contig1332.2713.1|Name=mRNA_H-canaliculatus_F_contig1332.2713.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2955bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1332:763..3717- (Hapterophycus canaliculatus Oshoro5f female)
AGCAGCAGCAGCGGCGGCGGCGGCGGGTGGTGGCCAACCAGGAGCACGAC
TCTCGCACAGTCATCGGTGCACACAGAGGCGACACGCCTCGGAGGGGGCA
ACATCGGCAGCAGCGGCAGCAGCAACATGAGCGTTTCGGTGCCCGACGCG
ATTTCGGATAACGATCTCGCGTATCCTTCTCGTACCCAGCAATCCACCGC
CGCGATACTGAGCGGAGGATCCCAGCGGCAGCAGCACGAGCGCAAGCCTT
GGCTCAAGCCCGTCGCGAGCCTTCTCCGGGGGATCCCGCAGCCCAAGCTG
CAGCGGGATTGGAGCGATGGAGGCGGGGGGGTTGTGCCTGTCGGACGCTT
TACTCCGGCCAACCCGGCCGCCGCCGCAACCCCTGCCGTCCACATGGTGC
CACAACAAGATGGCCAGCTTTTTTCGCATCTTGGTTGGCGCGGGAACAAT
GCAGCAGGAGGAACAACGACGGCGGCCGTTGTGGAGTCGGGCGGCGCCAA
CAACACCAGCAGCGAGAAGTACGCTCGCTTCGAGAGGCAGCCCCACCACC
ACCACCTCCAGCAGCAGCACAAGCAGCTGCACGTGCTGGCTCTTGGTCAG
GACCGCTCCCGCAGCGTGTCTCCGCGGATCGTTCGCGGCCCGCTGGGAGG
CGCAGTATCTCCAGGCAGGAGCCGACCTCAACAACAACAACAACAACAAC
AACCTCTTTCCTCCCCCTCGAATCGGCGCCGTGATGATCTGCGCGCTGCC
CGAAACTCGGGCATGCACCACCGCAGCAACAGCCTACACGACCACGCGGA
GGAGGCACGCCGACTCTCCGCGCACAACGACGTCCCCTGGAGACTCGGCG
GTGGTTTTCACGACAACGGTGGTGACGCGCGACGGCAATCCTACTTCGAC
CGGCCGAGCCCCTACCAACAACATCGCCGCCAACGCCACCAGCGGGGGGG
GCACTTTTTTCCCACGGCTGCTGCCGATGCAGCTGTTGCCTCCGTGCCAG
TACCCCGGGAAGATGCGACCAGGATGTCGACGGCGAGGGCGGCGGCAACA
GCGCTTCAGGACCCCTTCCGCACGCCGACGCCGACGGCGGTGGCGGCGAC
GCCCTTCTGGGGGGAGCCGGGCGAGTCTCCGACGAAGCAGCAGCGCAACA
GCACGGTCGGAGTTGTCACCAAGAACCCTCGGCAGCAGCAGCGGCAGCAG
CAGCAGCAGGAGAAGCAGCAGCAGCAGGAGAAGCAGCAGCAGCCACAGTG
CCTGTTCCGAGGGTGTTCGAGAAGGTCAACCCACGCCGCCCCTGGAGAAA
AACCCACCTACTGCGCGGAGCATCGCATTGCGGGGATGTCGAATGCTGTG
GCCTCTAGCGCCGTGACGCCCAGCGGCGGCGTCAGCAAGCGCAACCGTTG
CCTCATGCCCGGTTGCAGCAAGCCCCCCCGCTACGCGCTCCCGGGACACA
AGGCGGAGTACTGCACGCTCCACAAAATGGACAACTACGTCGACGTCAAG
GTACTTGCATTTTCATTTACGATCTTGGGTGTTTTCAACCGTGCGTATGT
CCTCCTCGGCAAGAGGGGTAAAAAAAAAAGGTGATGAGAGTCTCCGCTCG
CTGAGAAGCATTCAAGCGCTAGCACTTGTTCCTGCGCTGTATTCGATATT
TCATCGCTCTCTCCGCGCACGGTACACCAGATCTCCATTTCTTCGACGTA
TGTCCGTCGTGCTCTCTGCCCTCTCGGACACTCGGACATGCCGAGATCGG
ATTGTTGCTCCTTGTCTTGAAAACCTCCTGAAAACGTCGGATTTTTGCTC
CCTATTTTTTCCCGTCGCCCGCTCCTTTCATCTCTTTTTGTAGAGACACA
CTGAAGTGTGTATAAACGCTCTTTCCCCCCTCCAACTGCGGAATATACTC
ATAATCAAACCTGTTGTACATCAGTTACCTACATGTGATTCGAGAGAGAG
CCCGGTCCTTCCATCTTTTCTTCCGCCCGGAGTATTTGGAGACCCTGAAA
CTATTTGCCATTATTTTTTTCGACACGTGTGCATAGTTTTGGGAAGAGGA
CCCTTTCACACCTTTCAACTTTTCCGGGTGGTTCCTCGAAAGCAAGTGGT
TGGTTTATTTTGCGCGTTTTTCTGCATTTCCAGAGTCCGCCGGGGTCGCC
TCTCCCTCTCTCCTCCGTTTTCTTCCTTTTTATCTCTCTTTCTGTCTCTC
TGTCTCTCTCTCTCTCTCCCTCTCTCTCTTCCCAAAGTAGGAAAAAGTTG
TTTTCCAACGACCAATCCATACGTGACAGACCGTACATTATATTCATCCA
TCACCAGCGCTGCTGCAGCTACATACCTGGTGTTGACGTGCGGACCAGCC
GGCAGGTGTGCTGTATGCCACCACAAGCACCGCGGGCAAACTTCAACGGA
TACCTGTTCAAGAAGGTAAGATGAAGATCATCTTGTCTCGGCGCTTCAGC
CGGGGGGGGGGGGCGTGCTCGTTGTGCAGCGGAATTTTTTGCCTCGGTGT
GTCACCGCCCCCTAAGTAAATCACAGCTCTCCATAGTTTCGATCTAAACG
GTCGATGTATTCTATTCCATGTCCGCGCCCTCTCAAGCGAAGCATGCGCG
TATCACAGGGTGGCGAATGGCGAATGGCGAATGGCGAATGGTTGGTTTCT
CTTGTTGGTGCCTGCGGCCAGGCCCTTAATTCAGTCTCTGAGGTTGCCGT
TGCCCACCACCAGCTTTACCCTCCCCTCCCCCCTCCCCTTTGCCCACCCC
CCCACCCCCGCCCATTCCCCTCCTCTTCCCATCCCCACACCCAACCCCAA
CGGGCCGCGGCGTGTTTTGTGTGATCGGCTTGTGTATACAGCACCCTCGC
TGCGAGTCCGAGCTGGGGTGCGTCCGGCAGCCTACCTTCGGATGGGAAGG
GGAGAAGGCCCGCTTCTGCAGCGCGCACAAGATCGAAAACATGCTCGATG
TCAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1332:763..3717-

>mRNA_H-canaliculatus_F_contig1332.2713.1 ID=mRNA_H-canaliculatus_F_contig1332.2713.1|Name=mRNA_H-canaliculatus_F_contig1332.2713.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3108bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1332:763..3717- (Hapterophycus canaliculatus Oshoro5f female)
AGCAGCAGCAGCGGCGGCGGCGGCGGGTGGTGGCCAACCAGGAGCACGAC
TCTCGCACAGTCATCGGTGCACACAGAGGCGACACGCCTCGGAGGGGGCA
ACATCGGCAGCAGCGGCAGCAGCAACATGAGCGTTTCGGTGCCCGACGCG
ATTTCGGATAACGATCTCGCGTATCCTTCTCGTACCCAGCAATCCACCGC
CGCGATACTGAGCGGAGGATCCCAGCGGCAGCAGCACGAGCGCAAGCCTT
GGCTCAAGCCCGTCGCGAGCCTTCTCCGGGGGATCCCGCAGCCCAAGCTG
CAGCGGGATTGGAGCGATGGAGGCGGGGGGGTTGTGCCTGTCGGACGCTT
TACTCCGGCCAACCCGGCCGCCGCCGCAACCCCTGCCGTCCACATGGTGC
CACAACAAGATGGCCAGCTTTTTTCGCATCTTGGTTGGCGCGGGAACAAT
GCAGCAGGAGGAACAACGACGGCGGCCGTTGTGGAGTCGGGCGGCGCCAA
CAACACCAGCAGCGAGAAGTACGCTCGCTTCGAGAGGCAGCCCCACCACC
ACCACCTCCAGCAGCAGCACAAGCAGCTGCACGTGCTGGCTCTTGGTCAG
GACCGCTCCCGCAGCGTGTCTCCGCGGATCGTTCGCGGCCCGCTGGGAGG
CGCAGTATCTCCAGGCAGGAGCCGACCTCAACAACAACAACAACAACAAC
AACCTCTTTCCTCCCCCTCGAATCGGCGCCGTGATGATCTGCGCGCTGCC
CGAAACTCGGGCATGCACCACCGCAGCAACAGCCTACACGACCACGCGGA
GGAGGCACGCCGACTCTCCGCGCACAACGACGTCCCCTGGAGACTCGGCG
GTGGTTTTCACGACAACGGTGGTGACGCGCGACGGCAATCCTACTTCGAC
CGGCCGAGCCCCTACCAACAACATCGCCGCCAACGCCACCAGCGGGGGGG
GCACTTTTTTCCCACGGCTGCTGCCGATGCAGCTGTTGCCTCCGTGCCAA
GCAGCAGCAGCGGCGGCGGCGGCGGGTGGTGGCCAACCAGGAGCACGACT
CTCGCACAGTCATCGGTGCACACAGAGGCGACACGCCTCGGAGGGGGCAA
CATCGGCAGCAGCGGCAGCAGCAACATGAGCGTTTCGGTGCCCGACGCGA
TTTCGGATAACGATCTCGCGTATCCTTCTCGTACCCAGCAATCCACCGCC
GCGATACTGAGCGGAGGATCCCAGCGGCAGCAGCACGAGCGCAAGCCTTG
GCTCAAGCCCGTCGCGAGCCTTCTCCGGGGGATCCCGCAGCCCAAGCTGC
AGCGGGATTGGAGCGATGGAGGCGGGGGGGTTGTGCCTGTCGGACGCTTT
ACTCCGGCCAACCCGGCCGCCGCCGCAACCCCTGCCGTCCACATGGTGCC
ACAACAAGATGGCCAGCTTTTTTCGCATCTTGGTTGGCGCGGGAACAATG
CAGCAGGAGGAACAACGACGGCGGCCGTTGTGGAGTCGGGCGGCGCCAAC
AACACCAGCAGCGAGAAGTACGCTCGCTTCGAGAGGCAGCCCCACCACCA
CCACCTCCAGCAGCAGCACAAGCAGCTGCACGTGCTGGCTCTTGGTCAGG
ACCGCTCCCGCAGCGTGTCTCCGCGGATCGTTCGCGGCCCGCTGGGAGGC
GCAGTATCTCCAGGCAGGAGCCGACCTCAACAACAACAACAACAACAACA
ACCTCTTTCCTCCCCCTCGAATCGGCGCCGTGATGATCTGCGCGCTGCCC
GAAACTCGGGCATGCACCACCGCAGCAACAGCCTACACGACCACGCGGAG
GAGGCACGCCGACTCTCCGCGCACAACGACGTCCCCTGGAGACTCGGCGG
TGGTTTTCACGACAACGGTGGTGACGCGCGACGGCAATCCTACTTCGACC
GGCCGAGCCCCTACCAACAACATCGCCGCCAACGCCACCAGCGGGGGGGG
CACTTTTTTCCCACGGCTGCTGCCGATGCAGCTGTTGCCTCCGTGCCAGA
CCCCTTCCGCACGCCGACGCCGACGGCGGTGGCGGCGACGCCCTTCTGGG
GGGAGCCGGGCGAGTCTCCGACGAAGCAGCAGCGCAACAGCACGGTCGGA
GTTGTCACCAAGAACCCTCGGCAGCAGCAGCGGCAGCAGCAGCAGCAGGA
GAAGCAGCAGCAGCAGGAGAAGCAGCAGCAGCCACAGTGCCTGTTCCGAG
GGTGTTCGAGAAGGTCAACCCACGCCGCCCCTGGAGAAAAACCCACCTAC
TGCGCGGAGCATCGCATTGCGGGGATGTCGAATGCTGTGGCCTCTAGCGC
CGTGACGCCCAGCGGCGGCGTCAGCAAGCGCAACCGTTGCCTCATGCCCG
GTTGCAGCAAGCCCCCCCGCTACGCGCTCCCGGGACACAAGGCGGAGTAC
TGCACGCTCCACAAAATGGACAACTACGTCGACGTCAAGGACCCCTTCCG
CACGCCGACGCCGACGGCGGTGGCGGCGACGCCCTTCTGGGGGGAGCCGG
GCGAGTCTCCGACGAAGCAGCAGCGCAACAGCACGGTCGGAGTTGTCACC
AAGAACCCTCGGCAGCAGCAGCGGCAGCAGCAGCAGCAGGAGAAGCAGCA
GCAGCAGGAGAAGCAGCAGCAGCCACAGTGCCTGTTCCGAGGGTGTTCGA
GAAGGTCAACCCACGCCGCCCCTGGAGAAAAACCCACCTACTGCGCGGAG
CATCGCATTGCGGGGATGTCGAATGCTGTGGCCTCTAGCGCCGTGACGCC
CAGCGGCGGCGTCAGCAAGCGCAACCGTTGCCTCATGCCCGGTTGCAGCA
AGCCCCCCCGCTACGCGCTCCCGGGACACAAGGCGGAGTACTGCACGCTC
CACAAAATGGACAACTACGTCGACGTCAAGCACCCTCGCTGCGAGTCCGA
GCTGGGGTGCGTCCGGCAGCCTACCTTCGGATGGGAAGGGGAGAAGGCCC
GCTTCTGCAGCGCGCACAAGATCGAAAACATGCTCGATGTCAAGCACCCT
CGCTGCGAGTCCGAGCTGGGGTGCGTCCGGCAGCCTACCTTCGGATGGGA
AGGGGAGAAGGCCCGCTTCTGCAGCGCGCACAAGATCGAAAACATGCTCG
ATGTCAAG
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