mRNA_H-canaliculatus_F_contig13319.2712.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13319.2712.1
Unique NamemRNA_H-canaliculatus_F_contig13319.2712.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13319.2712.1 vs. uniprot
Match: D8LNC2_ECTSI (COP9 signalosome complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNC2_ECTSI)

HSP 1 Score: 365 bits (938), Expect = 6.270e-123
Identity = 176/196 (89.80%), Postives = 191/196 (97.45%), Query Frame = 1 
Query:    1 IMTQEEEQGIWGFKALKQMMKLLFQMSAFKEFTACYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWNLLKGFYEQTLDTLREHNNNRLWFKCNLKLGHLMYEVGDMGRLQRIIKELLRACKSEGSGDNDGTNAVKRGTQLLEIFALQILMHSRQRDKKKLREVYERAQRITSAVPHPRVLATILECGGKMHMQ 588
            +M QEEEQGIWGFKALKQMMKLLF+MSAF+EFT CYTQLLGYTKGAV+QNVGEKGVNSVLDYVSSSNDW LLKGFYEQTLDTLREH NNRLWFKCNLKLGHLMY+VG+MGRLQRIIKELL+ACK+EG+GD+D TNAVKRGTQLLEIF+LQILMHSRQRD+KKLREVYERA++ITSAVPHPRV+ATILECGGKMHMQ
Sbjct:   80 VMAQEEEQGIWGFKALKQMMKLLFKMSAFQEFTDCYTQLLGYTKGAVSQNVGEKGVNSVLDYVSSSNDWGLLKGFYEQTLDTLREHKNNRLWFKCNLKLGHLMYDVGEMGRLQRIIKELLKACKNEGNGDDDDTNAVKRGTQLLEIFSLQILMHSRQRDQKKLREVYERARKITSAVPHPRVVATILECGGKMHMQ 275
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BLAST of mRNA_H-canaliculatus_F_contig13319.2712.1 vs. uniprot
Match: K3X4W8_GLOUD (COP9 signalosome complex subunit 2 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4W8_GLOUD)

HSP 1 Score: 223 bits (569), Expect = 4.300e-68
Identity = 105/195 (53.85%), Postives = 145/195 (74.36%), Query Frame = 1 
Query:    1 IMTQEEEQGIWGFKALKQMMKLLFQMSAFKEFTACYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWNLLKGFYEQTLDTLREHNNNRLWFKCNLKLGHLMYEVGDMGRLQRIIKELLRACKSEGSGDNDGTNAVKRGTQLLEIFALQILMHSRQRDKKKLREVYERAQRITSAVPHPRVLATILECGGKMHM 585
            ++T + ++  WGFKALK+++KL F++    E    Y +LLGYTK  VT+NVGEKG+NS+LD+VS+S +W +L+ FYE TL+TL+E  N RLWFK NLKLG+L+YE+GD  RL +I+KELL +C+     D DG + VK+ TQLLE++ALQI M++ Q+D KKL  +YE+A R  S V HP+++  I ECGGKMHM
Sbjct:   59 VLTMQVDKTDWGFKALKRIVKLHFELGQHDEAMRQYEELLGYTKSDVTRNVGEKGINSILDFVSTSKNWEILQRFYETTLETLKEARNERLWFKTNLKLGNLLYEIGDFSRLSKIVKELLSSCE-----DEDGEDGVKKNTQLLEVYALQIQMYTSQKDNKKLVSIYEKALRTKSGVAHPKIIGVIRECGGKMHM 248
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BLAST of mRNA_H-canaliculatus_F_contig13319.2712.1 vs. uniprot
Match: A0A0P1AF91_PLAHL (COP9 signalosome complex subunit 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AF91_PLAHL)

HSP 1 Score: 216 bits (550), Expect = 1.680e-65
Identity = 107/195 (54.87%), Postives = 148/195 (75.90%), Query Frame = 1 
Query:    1 IMTQEEEQGIWGFKALKQMMKLLFQMSAFKEFTACYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWNLLKGFYEQTLDTLREHNNNRLWFKCNLKLGHLMYEVGDMGRLQRIIKELLRACKSEGSGDNDGTNAVKRGTQLLEIFALQILMHSRQRDKKKLREVYERAQRITSAVPHPRVLATILECGGKMHM 585
            ++T +  +  WGFKALK+++KLLF++    E    Y +LLGYTK AVT+NVGEKG+NS+LD+VS+S +W +L+ FYE TL+TL+E  N RLWFK ++KLG+L+YE+GD  RL++IIKELL +C SEG  D DG   V+R +QLLE++ALQI M++ Q+D KKL  +YE+A R  S V HP+++  I ECGGKM+M
Sbjct:   58 VLTLQNGETDWGFKALKRIVKLLFELQRHDEAMRRYEELLGYTKTAVTRNVGEKGINSILDFVSTSKNWEILQQFYETTLETLKEARNERLWFKTSVKLGNLLYEIGDFTRLRKIIKELLASC-SEGDAD-DG---VRRNSQLLEVYALQIQMYTAQKDNKKLVSIYEKALRTKSGVAHPKIIGVIHECGGKMYM 247
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BLAST of mRNA_H-canaliculatus_F_contig13319.2712.1 vs. uniprot
Match: A0A8K1FC14_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FC14_PYTOL)

HSP 1 Score: 216 bits (550), Expect = 2.980e-65
Identity = 102/195 (52.31%), Postives = 144/195 (73.85%), Query Frame = 1 
Query:    1 IMTQEEEQGIWGFKALKQMMKLLFQMSAFKEFTACYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWNLLKGFYEQTLDTLREHNNNRLWFKCNLKLGHLMYEVGDMGRLQRIIKELLRACKSEGSGDNDGTNAVKRGTQLLEIFALQILMHSRQRDKKKLREVYERAQRITSAVPHPRVLATILECGGKMHM 585
            +  Q E Q  WGFKALK+++KL F+++ +      Y +LLGYTK AVT+NVGEKG+NS+LD+VS+S +W +L+ FYE TL+TL+E  N RLWFK NLKLG+L+YE+GD  RL +I++EL+ +C+ E S D      VK+ +QLLE++ALQI M++ Q+D KKL  +YE+A R  S V HP+++  I ECGGKM++
Sbjct:   59 VEMQNESQSDWGFKALKRIVKLHFELNRYDAAIKRYEELLGYTKSAVTRNVGEKGINSILDFVSTSKNWEILQRFYETTLETLKEARNERLWFKTNLKLGNLLYEIGDFTRLTKIVRELIASCEEEDSEDG-----VKKNSQLLEVYALQIQMYTSQKDNKKLVSIYEKALRTKSGVAHPKIMGVIHECGGKMYL 248
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BLAST of mRNA_H-canaliculatus_F_contig13319.2712.1 vs. uniprot
Match: F0WS67_9STRA (COP9 signalosome complex subunit 2 n=3 Tax=Albugo TaxID=65356 RepID=F0WS67_9STRA)

HSP 1 Score: 215 bits (548), Expect = 5.790e-65
Identity = 103/195 (52.82%), Postives = 142/195 (72.82%), Query Frame = 1 
Query:    1 IMTQEEEQGIWGFKALKQMMKLLFQMSAFKEFTACYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWNLLKGFYEQTLDTLREHNNNRLWFKCNLKLGHLMYEVGDMGRLQRIIKELLRACKSEGSGDNDGTNAVKRGTQLLEIFALQILMHSRQRDKKKLREVYERAQRITSAVPHPRVLATILECGGKMHM 585
            ++  ++E+  WGFKALK+++KL F    +      Y +LLGYTK +VT+NVGEKG+NS+LD+VS+S +W +L+ FYE TL+TL+E  N RLWFK NLKLG+L+YE+ D  RL +IIKELL +C+ E S D      VK+ TQLLE++ALQI M++ ++D KKL  +YE+A R  S V HP+++  I ECGGKMHM
Sbjct:   57 VLELQQEESDWGFKALKRIVKLHFDKKEYDNAILRYEELLGYTKSSVTRNVGEKGINSILDHVSTSKNWEILQRFYETTLETLKEARNERLWFKTNLKLGNLLYEIEDYARLTKIIKELLLSCEDEDSEDG-----VKKNTQLLEVYALQIQMYTSEKDNKKLMSMYEKALRTKSGVAHPKIIGVIRECGGKMHM 246
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BLAST of mRNA_H-canaliculatus_F_contig13319.2712.1 vs. uniprot
Match: H3GHW8_PHYRM (COP9 signalosome complex subunit 2 n=15 Tax=Peronosporaceae TaxID=4777 RepID=H3GHW8_PHYRM)

HSP 1 Score: 215 bits (548), Expect = 5.940e-65
Identity = 102/195 (52.31%), Postives = 142/195 (72.82%), Query Frame = 1 
Query:    1 IMTQEEEQGIWGFKALKQMMKLLFQMSAFKEFTACYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWNLLKGFYEQTLDTLREHNNNRLWFKCNLKLGHLMYEVGDMGRLQRIIKELLRACKSEGSGDNDGTNAVKRGTQLLEIFALQILMHSRQRDKKKLREVYERAQRITSAVPHPRVLATILECGGKMHM 585
            ++  + EQ  WGFKALK+ +KLLF++         Y +LLGYTK AVT+NVGEKG+NS+LD+VS+S  W++L+ FYE TL+TL+E  N RLWFK ++KLG+L+YE+GD  RL +IIKELL +C      D D  + V++ +QLLE++ALQI M++ Q+D KKL  +YE+A R  S V HP+++  I ECGGKM+M
Sbjct:   59 VLALQTEQSDWGFKALKRTVKLLFELQRHDAAMRTYEELLGYTKTAVTRNVGEKGINSILDFVSTSKSWDVLQKFYETTLETLKEARNERLWFKTSVKLGNLLYEIGDFSRLSKIIKELLASCS-----DEDADDGVRKNSQLLEVYALQIQMYTAQKDNKKLVSIYEKALRTKSGVAHPKIIGVIHECGGKMYM 248
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BLAST of mRNA_H-canaliculatus_F_contig13319.2712.1 vs. uniprot
Match: R7QHZ0_CHOCR (COP9 signalosome complex subunit 2 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHZ0_CHOCR)

HSP 1 Score: 207 bits (526), Expect = 8.970e-62
Identity = 99/195 (50.77%), Postives = 142/195 (72.82%), Query Frame = 1 
Query:    1 IMTQEEEQGIWGFKALKQMMKLLFQMSAFKEFTACYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWNLLKGFYEQTLDTLREHNNNRLWFKCNLKLGHLMYEVGDMGRLQRIIKELLRACKSEGSGDNDGTNAVKRGTQLLEIFALQILMHSRQRDKKKLREVYERAQRITSAVPHPRVLATILECGGKMHM 585
            ++  E E+G WGFKALKQ++KL F++  FKE    Y ++L Y + AVT+N  EK +NS+LD+VSSSN  NLL+ FYE TL  L+E  N RLWFK NLKLG L ++VG+   L RI+KEL ++C+       DG++  K+GTQLLE++AL+I M++  ++ K+L+++YE+A ++ SA+PHPR++  I ECGGKMHM
Sbjct:   51 VLQMESEKGEWGFKALKQIVKLKFRLGQFKEMITRYKEMLTYIRSAVTRNYSEKCINSILDFVSSSNQMNLLQEFYETTLGALQEARNERLWFKTNLKLGKLWFDVGEFPLLARILKELHKSCQQA-----DGSDDHKKGTQLLEVYALEIQMYTATKNTKQLKQLYEKALQVKSAIPHPRIMGVIRECGGKMHM 240
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BLAST of mRNA_H-canaliculatus_F_contig13319.2712.1 vs. uniprot
Match: A0A1X7VTW3_AMPQE (COP9 signalosome complex subunit 2 n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VTW3_AMPQE)

HSP 1 Score: 206 bits (525), Expect = 1.230e-61
Identity = 98/196 (50.00%), Postives = 144/196 (73.47%), Query Frame = 1 
Query:    1 IMTQEEEQGIWGFKALKQMMKLLFQMSAFKEFTACYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWNLLKGFYEQTLDTLREHNNNRLWFKCNLKLGHLMYEVGDMGRLQRIIKELLRACKSEGSGDNDGTNAVKRGTQLLEIFALQILMHSRQRDKKKLREVYERAQRITSAVPHPRVLATILECGGKMHMQ 588
            ++  EEE+G WGFKALKQMMKL F++    E   CY +LL Y +GAVT+N  EK +NS+LDY+S+S   +LL+ FYE TL+ L++  N+RLWFK N+KLG L ++ G+  +L RIIK+L  +C++      +G + VK+GTQLLE++AL+I M++ Q++ KKL+ +YE++ RI SA+PHP ++  I ECGGKMH++
Sbjct:   52 VLELEEEKGEWGFKALKQMMKLHFRLRQNNEMMNCYKKLLTYMRGAVTRNYSEKSINSILDYISTSEQADLLQDFYEATLEALKDARNDRLWFKTNVKLGKLCFDQGEFNKLTRIIKQLHLSCQTA-----EGEDDVKKGTQLLEVYALEIQMYTAQKNNKKLKALYEQSLRIKSAIPHPLIMGVIRECGGKMHLR 242
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BLAST of mRNA_H-canaliculatus_F_contig13319.2712.1 vs. uniprot
Match: UPI000D0C7A97 (COP9 signalosome complex subunit 2 n=1 Tax=Halyomorpha halys TaxID=286706 RepID=UPI000D0C7A97)

HSP 1 Score: 204 bits (520), Expect = 8.130e-61
Identity = 96/190 (50.53%), Postives = 142/190 (74.74%), Query Frame = 1 
Query:   19 EQGIWGFKALKQMMKLLFQMSAFKEFTACYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWNLLKGFYEQTLDTLREHNNNRLWFKCNLKLGHLMYEVGDMGRLQRIIKELLRACKSEGSGDNDGTNAVKRGTQLLEIFALQILMHSRQRDKKKLREVYERAQRITSAVPHPRVLATILECGGKMHMQ 588
            E+G WGFKALKQM+K+ F+++ F+E    Y  LL Y K AVT+N  EK +NS+LDY+S+S + +LL+ FYE TL+ L++  N+RLWFK N KLG L Y++GD  +L +IIK+L ++CK++     DG + +K+GTQLLEI+AL+I M++ Q++ KKL+ +YE++  I SA+PHP ++  I ECGGKMH++
Sbjct:   65 EKGEWGFKALKQMIKIFFKLNEFQEMMEKYLLLLTYIKSAVTRNHSEKSINSILDYISTSKNMDLLQNFYEATLEALKDAKNDRLWFKTNTKLGKLYYDIGDYSKLAKIIKQLHQSCKTD-----DGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLR 249
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13319.2712.1 vs. uniprot
Match: A0A8I6RDF2_CIMLE (COP9 signalosome complex subunit 2 n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6RDF2_CIMLE)

HSP 1 Score: 204 bits (519), Expect = 1.040e-60
Identity = 98/190 (51.58%), Postives = 141/190 (74.21%), Query Frame = 1 
Query:   16 EEQGIWGFKALKQMMKLLFQMSAFKEFTACYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWNLLKGFYEQTLDTLREHNNNRLWFKCNLKLGHLMYEVGDMGRLQRIIKELLRACKSEGSGDNDGTNAVKRGTQLLEIFALQILMHSRQRDKKKLREVYERAQRITSAVPHPRVLATILECGGKMHM 585
            E++G WGFKALKQ++KLLF++  + +  A Y +LL Y K +VT+N  EK +NS+LDYVSSS D  LL+ FYE TL+ L+E  N+RLWFK N KLG L Y++G+  +L +IIK+L +AC+++     DG + +K+GTQLLEI AL+I M++ Q++ K L+ +YE++ RI SA+PHP ++  I ECGGKMH+
Sbjct:   60 EQKGEWGFKALKQVIKLLFKLGKYDDMMASYKRLLTYIKSSVTRNHSEKSINSILDYVSSSKDMGLLQSFYETTLEALKETRNDRLWFKTNTKLGKLYYDMGEYKKLAKIIKQLRQACQTD-----DGEDDLKKGTQLLEILALEIQMYTSQKNNKTLKALYEQSLRIKSAIPHPWIMGVIRECGGKMHL 244
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13319.2712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNC2_ECTSI6.270e-12389.80COP9 signalosome complex subunit 2 n=2 Tax=Ectocar... [more]
K3X4W8_GLOUD4.300e-6853.85COP9 signalosome complex subunit 2 n=1 Tax=Globisp... [more]
A0A0P1AF91_PLAHL1.680e-6554.87COP9 signalosome complex subunit 2 n=1 Tax=Plasmop... [more]
A0A8K1FC14_PYTOL2.980e-6552.31Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0WS67_9STRA5.790e-6552.82COP9 signalosome complex subunit 2 n=3 Tax=Albugo ... [more]
H3GHW8_PHYRM5.940e-6552.31COP9 signalosome complex subunit 2 n=15 Tax=Perono... [more]
R7QHZ0_CHOCR8.970e-6250.77COP9 signalosome complex subunit 2 n=1 Tax=Chondru... [more]
A0A1X7VTW3_AMPQE1.230e-6150.00COP9 signalosome complex subunit 2 n=1 Tax=Amphime... [more]
UPI000D0C7A978.130e-6150.53COP9 signalosome complex subunit 2 n=1 Tax=Halyomo... [more]
A0A8I6RDF2_CIMLE1.040e-6051.58COP9 signalosome complex subunit 2 n=1 Tax=Cimex l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13319contigH-canaliculatus_F_contig13319:413..2930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score364.4
Seed ortholog evalue3.3e-98
Seed eggNOG ortholog2880.D8LNC2
Preferred nameCOPS2
KEGG koko:K12176
GOsGO:0000003,GO:0000122,GO:0000338,GO:0000715,GO:0000909,GO:0002009,GO:0003006,GO:0003674,GO:0003712,GO:0003714,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007282,GO:0007283,GO:0007292,GO:0007293,GO:0007399,GO:0007517,GO:0007519,GO:0008134,GO:0008150,GO:0008152,GO:0008180,GO:0008230,GO:0008231,GO:0008283,GO:0008356,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0014706,GO:0016043,GO:0016070,GO:0016333,GO:0016922,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0030163,GO:0030182,GO:0030582,GO:0030584,GO:0030718,GO:0030727,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031647,GO:0031935,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0035914,GO:0036099,GO:0036211,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043235,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044798,GO:0045892,GO:0045934,GO:0046483,GO:0046983,GO:0048134,GO:0048135,GO:0048138,GO:0048140,GO:0048142,GO:0048232,GO:0048468,GO:0048477,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048646,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051427,GO:0051704,GO:0051716,GO:0060255,GO:0060429,GO:0060537,GO:0060538,GO:0060968,GO:0061061,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0070791,GO:0071704,GO:0071840,GO:0075259,GO:0080090,GO:0090052,GO:0090054,GO:0090304,GO:0090575,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902275,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.protein deneddylation
EggNOG OGsCOG5159@1,KOG1464@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProteasome component (PCI) domain
Ec32 orthologEc-04_004400.1
Exons5
Model size588
Cds size585
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13319.2712.1prot_H-canaliculatus_F_contig13319.2712.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13319 416..2930 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929071.069403-UTR-H-canaliculatus_F_contig13319:412..4151622929071.069403-UTR-H-canaliculatus_F_contig13319:412..415Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13319 413..415 +
1696845668.5522432-UTR-H-canaliculatus_F_contig13319:412..4151696845668.5522432-UTR-H-canaliculatus_F_contig13319:412..415Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13319 413..415 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929071.0873218-CDS-H-canaliculatus_F_contig13319:415..5331622929071.0873218-CDS-H-canaliculatus_F_contig13319:415..533Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13319 416..533 +
1696845668.563079-CDS-H-canaliculatus_F_contig13319:415..5331696845668.563079-CDS-H-canaliculatus_F_contig13319:415..533Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13319 416..533 +
1622929071.1081786-CDS-H-canaliculatus_F_contig13319:1020..11501622929071.1081786-CDS-H-canaliculatus_F_contig13319:1020..1150Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13319 1021..1150 +
1696845668.571823-CDS-H-canaliculatus_F_contig13319:1020..11501696845668.571823-CDS-H-canaliculatus_F_contig13319:1020..1150Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13319 1021..1150 +
1622929071.122631-CDS-H-canaliculatus_F_contig13319:1767..18781622929071.122631-CDS-H-canaliculatus_F_contig13319:1767..1878Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13319 1768..1878 +
1696845668.5805936-CDS-H-canaliculatus_F_contig13319:1767..18781696845668.5805936-CDS-H-canaliculatus_F_contig13319:1767..1878Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13319 1768..1878 +
1622929071.1341097-CDS-H-canaliculatus_F_contig13319:2212..23411622929071.1341097-CDS-H-canaliculatus_F_contig13319:2212..2341Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13319 2213..2341 +
1696845668.594286-CDS-H-canaliculatus_F_contig13319:2212..23411696845668.594286-CDS-H-canaliculatus_F_contig13319:2212..2341Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13319 2213..2341 +
1622929071.1671796-CDS-H-canaliculatus_F_contig13319:2833..29301622929071.1671796-CDS-H-canaliculatus_F_contig13319:2833..2930Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13319 2834..2930 +
1696845668.605039-CDS-H-canaliculatus_F_contig13319:2833..29301696845668.605039-CDS-H-canaliculatus_F_contig13319:2833..2930Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13319 2834..2930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13319.2712.1

>prot_H-canaliculatus_F_contig13319.2712.1 ID=prot_H-canaliculatus_F_contig13319.2712.1|Name=mRNA_H-canaliculatus_F_contig13319.2712.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=195bp
MTQEEEQGIWGFKALKQMMKLLFQMSAFKEFTACYTQLLGYTKGAVTQNV
GEKGVNSVLDYVSSSNDWNLLKGFYEQTLDTLREHNNNRLWFKCNLKLGH
LMYEVGDMGRLQRIIKELLRACKSEGSGDNDGTNAVKRGTQLLEIFALQI
LMHSRQRDKKKLREVYERAQRITSAVPHPRVLATILECGGKMHMQ
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mRNA from alignment at H-canaliculatus_F_contig13319:413..2930+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13319.2712.1 ID=mRNA_H-canaliculatus_F_contig13319.2712.1|Name=mRNA_H-canaliculatus_F_contig13319.2712.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2518bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13319:413..2930+ (Hapterophycus canaliculatus Oshoro5f female)
ATCATGACCCAGGAAGAGGAGCAGGGTATCTGGGGGTTCAAGGCCCTGAA
GCAGATGATGAAGCTGCTGTTCCAGATGTCCGCCTTCAAGGAGTTCACGG
CGTGCTACACGCAGCTGTTGGGTGAGCGACGTGCATGACCTCCGATGCGA
GCGAGTGGGTCTTCCTCGTCTCTCAGTCTGTGTCGCCGAGGTGCAACGCT
GGAGGGCGCGTGTATCAAGCAGACGACGCACAAGTGTCGTGGTCTGCATG
CAGTTTATCTTTTGTTGTTGGTGTCGTGACAGGGCGTTGTCCGGTATTTT
TCATGCACGGAGTGGGCATGATGTAACATGCATGCATGGCGGCACACACG
GGCATGATGGAGGGATGTACGCGAAGGGTACGCGGGTGCGCGACATCACA
AATGGACTTTCGTAGGAGCATCAAGGCCTTGCTTTGCAACCCATCAAATG
ATGTCTGCCCCCGCCCGCCGCCTTCCTAAGAGAGCACTCATGCCTGCTCC
TGGGGTGTTGACAGACCCTTGCAGCGATTCCTTCCCCCCTCCCCAATACA
TCACCAATTTTGCACGCTGTTGGATCTTTGTGGCCATCGTCGCCGTGTCG
CGTATAAGGGTACACGAAGGGAGCGGTGACACAGAACGTCGGAGAGAAGG
GCGTGAACAGCGTGCTGGACTACGTGTCCTCTTCCAACGACTGGAACCTC
CTCAAGGGTTTTTACGAGCAGACCCTTGACACTCTCAGGTGAATTCCACG
GATGTGTCTGCTGTCCTATTTTCTACTTGTACTTCGATGTAGTTGCCTGC
AAGAGTGTATTCGTGGTCGTTTGTCTCTCTCATACCGCTTTTTTTTTAAG
GAAAAACATAGCAACACCTTGGAAACAACTCCTGAGACACGTCGTCCGAG
GCGTACCTCGAGGCTTCTGTTGACTGCCAAACAACGAGGGTTCATTGATG
TGCAAGGTTGAGACTCAATGGGCACGCTACCTGGACTTCGAACCACGAGA
CCCCAAATAACGCATGTATAATAGAAGATAGACAATGCACGTGATTTGGT
TCAATGCAACAGACACAATTTTTTTTGGAATACTCCGGCACCAAGCTGGG
CCGTTTTTTTTTTGTCCTATGGGGTTGCTGTTTCGTCTGCGGATCCCTGC
CGGGTGCTGGCAAACCTCGTTTGGTAGTACTTTGGCGAGGCTGACCCTGA
ACGCACTTTCAAGGTCACATCCCGCGGTGGCAGACCTTATTTTACCGCGA
TTCTTTGTCTTGTTCGCTACCGCCCCCCTCCCACTCCGGATGCCACTTAC
GCTTCGTCTGCCATTGCTTTTGCCCCTGCATGCCTATGTCGTCCGTGGTG
TTCAGGGAGCACAACAACAATCGGTTATGGTTCAAGTGCAACTTGAAGCT
GGGCCACCTGATGTACGAGGTTGGGGACATGGGCAGGCTGCAGAGAATAA
TCAAGGAGCTCCTGAGGTAACAGAACGGAGCTGGGAGACGGGGAGAGAAT
GCGGATCAGGGTTTGCGAAGTTGTGGAAGCTCGCATCCCTGCATTGATGA
AACGGGCCCCGTCGCAACATCGAGAACGGGGGTGGGAGGGGCGGGGAGGT
GGGGTTGCCAGAGGGAAGGCCGTAGCCAGTGATCGCTCGACAGTATGTGT
CTGCAAGAAGCTCCTCTTCCGTAATCTTTCCAGCACCATTTTTGCTAGCC
ATGCTATTGATGATGCTGTTGTCGTTGTCCGTCTTGCTGCTAACTAGCTA
ACCAGAGTTGTTGTTGTTGTCGACTTCGCTTGGTGACGGCAACGCCCCAG
GGCGTGCAAGAGCGAGGGGAGCGGGGACAACGACGGCACCAACGCCGTCA
AGCGAGGGACTCAGCTGCTGGAGATTTTCGCGCTGCAGATCCTCATGCAC
TCCAGACAGAGGGACAAGAAGAAACTCAGGTGAGTCCCTGACTTGGCCGT
GGCTTCGAGGTGGGCAGAGAGAGTGGGACGAAGTCGCGCGCAGTTGTCGG
CGTGACTTCGCACCTGTTTGAGTTTATTTTCGTCGACGCTGCCGAAAAAC
CGGAGACGTTCTGCTCGCTGCTTCGGTCGTTACGACCGTGACGGCGAGCT
TCCGAAAGTCCGCCATCCCTTGATTCCTCAGGCCGGGCGCTTTTCCGCAC
GGAGCTGGCACAAAGCACTGCGCGATCTAGCTCCGCCGTTCACTCATGAT
ACGGAACACCGTGCAAAATTGGTGGACGATTGCCCTCCGCCCTCCCCGTC
CATCGTCCGTGCCTCGTTCAGCTTTCCTTGGAACTGGCAGCAACTTGGGC
CTTGAGCGTCTTCTAGAGGGGTGCGCCACACTTTCCCCCTGCGATCAAAC
TTGGCTCTGACCGCCGGCCCTCGTCCCATATCTTCGCCCCTGCGCTCGCC
GCTGTTTTGCCCCCTTGTCAGGGAAGTGTATGAGCGAGCGCAGCGAATAA
CGTCGGCAGTGCCGCATCCTAGAGTGCTGGCAACGATTCTCGAGTGCGGG
GGCAAGATGCACATGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13319:413..2930+

>mRNA_H-canaliculatus_F_contig13319.2712.1 ID=mRNA_H-canaliculatus_F_contig13319.2712.1|Name=mRNA_H-canaliculatus_F_contig13319.2712.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1170bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13319:413..2930+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACCCAGGAAGAGGAGCAGGGTATCTGGGGGTTCAAGGCCCTGAAGCA
GATGATGAAGCTGCTGTTCCAGATGTCCGCCTTCAAGGAGTTCACGGCGT
GCTACACGCAGCTGTTGGATGACCCAGGAAGAGGAGCAGGGTATCTGGGG
GTTCAAGGCCCTGAAGCAGATGATGAAGCTGCTGTTCCAGATGTCCGCCT
TCAAGGAGTTCACGGCGTGCTACACGCAGCTGTTGGGGTACACGAAGGGA
GCGGTGACACAGAACGTCGGAGAGAAGGGCGTGAACAGCGTGCTGGACTA
CGTGTCCTCTTCCAACGACTGGAACCTCCTCAAGGGTTTTTACGAGCAGA
CCCTTGACACTCTCAGGGTACACGAAGGGAGCGGTGACACAGAACGTCGG
AGAGAAGGGCGTGAACAGCGTGCTGGACTACGTGTCCTCTTCCAACGACT
GGAACCTCCTCAAGGGTTTTTACGAGCAGACCCTTGACACTCTCAGGGAG
CACAACAACAATCGGTTATGGTTCAAGTGCAACTTGAAGCTGGGCCACCT
GATGTACGAGGTTGGGGACATGGGCAGGCTGCAGAGAATAATCAAGGAGC
TCCTGAGGGAGCACAACAACAATCGGTTATGGTTCAAGTGCAACTTGAAG
CTGGGCCACCTGATGTACGAGGTTGGGGACATGGGCAGGCTGCAGAGAAT
AATCAAGGAGCTCCTGAGGGCGTGCAAGAGCGAGGGGAGCGGGGACAACG
ACGGCACCAACGCCGTCAAGCGAGGGACTCAGCTGCTGGAGATTTTCGCG
CTGCAGATCCTCATGCACTCCAGACAGAGGGACAAGAAGAAACTCAGGGC
GTGCAAGAGCGAGGGGAGCGGGGACAACGACGGCACCAACGCCGTCAAGC
GAGGGACTCAGCTGCTGGAGATTTTCGCGCTGCAGATCCTCATGCACTCC
AGACAGAGGGACAAGAAGAAACTCAGGGAAGTGTATGAGCGAGCGCAGCG
AATAACGTCGGCAGTGCCGCATCCTAGAGTGCTGGCAACGATTCTCGAGT
GCGGGGGCAAGATGCACATGCAGGGAAGTGTATGAGCGAGCGCAGCGAAT
AACGTCGGCAGTGCCGCATCCTAGAGTGCTGGCAACGATTCTCGAGTGCG
GGGGCAAGATGCACATGCAG
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