mRNA_H-canaliculatus_F_contig13317.2711.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13317.2711.1
Unique NamemRNA_H-canaliculatus_F_contig13317.2711.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13317.2711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13317contigH-canaliculatus_F_contig13317:1101..1672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size574
Cds size498
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929070.9455075-UTR-H-canaliculatus_F_contig13317:1100..11741622929070.9455075-UTR-H-canaliculatus_F_contig13317:1100..1174Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13317 1101..1174 +
1696845668.5180771-UTR-H-canaliculatus_F_contig13317:1100..11741696845668.5180771-UTR-H-canaliculatus_F_contig13317:1100..1174Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13317 1101..1174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929070.9642944-CDS-H-canaliculatus_F_contig13317:1174..16721622929070.9642944-CDS-H-canaliculatus_F_contig13317:1174..1672Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13317 1175..1672 +
1696845668.5287838-CDS-H-canaliculatus_F_contig13317:1174..16721696845668.5287838-CDS-H-canaliculatus_F_contig13317:1174..1672Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13317 1175..1672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13317.2711.1prot_H-canaliculatus_F_contig13317.2711.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13317 1175..1672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13317.2711.1

>prot_H-canaliculatus_F_contig13317.2711.1 ID=prot_H-canaliculatus_F_contig13317.2711.1|Name=mRNA_H-canaliculatus_F_contig13317.2711.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=166bp
MRGAVCALSYRVSGLRVLWWAVMKCDRLRHADMCCDVLRWDRVGSNSRRC
PVMGHVSLLPRSCGTKWNVVARRDRHRHPSCHFARCPIELSRNASTVLAQ
ACPSPSTPRAQLCSACGQGNADVSHPQMGHECTRGLKGSDRRSFRISGST
RDTSVDVNGASVFSFS
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mRNA from alignment at H-canaliculatus_F_contig13317:1101..1672+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13317.2711.1 ID=mRNA_H-canaliculatus_F_contig13317.2711.1|Name=mRNA_H-canaliculatus_F_contig13317.2711.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=572bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13317:1101..1672+ (Hapterophycus canaliculatus Oshoro5f female)
GGAGCATCCAAGAATCAGTTCGGCAGTCTCCTCCAAGACATCAAGCTGAA
CTCGGAACAGGTGGGTGATGGGTGATGCGTGGGGCTGTGTGTGCTCTCTC
CTACCGCGTTTCGGGGCTACGTGTTTTGTGGTGGGCTGTGATGAAATGTG
ATAGGTTGCGACATGCCGATATGTGCTGTGATGTGCTGCGATGGGATAGG
GTGGGATCTAACTCGCGGCGATGCCCTGTGATGGGCCATGTTTCTCTGCT
CCCCCGCTCGTGTGGCACGAAATGGAACGTAGTGGCGCGGCGCGATCGGC
ACCGCCACCCTTCTTGCCATTTCGCTCGCTGTCCCATCGAGCTCTCCCGC
AATGCGAGCACCGTTCTCGCTCAGGCGTGCCCCTCGCCCTCGACCCCCCG
TGCCCAGCTTTGCAGTGCCTGCGGGCAGGGCAACGCGGATGTGTCTCACC
CACAGATGGGGCACGAGTGCACGCGTGGTCTCAAAGGGTCAGATCGCCGG
AGCTTCAGAATCAGCGGTTCGACGAGAGACACTTCCGTGGACGTAAACGG
CGCCTCTGTTTTTTCCTTTTCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13317:1101..1672+

>mRNA_H-canaliculatus_F_contig13317.2711.1 ID=mRNA_H-canaliculatus_F_contig13317.2711.1|Name=mRNA_H-canaliculatus_F_contig13317.2711.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=996bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13317:1101..1672+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGTGGGGCTGTGTGTGCTCTCTCCTACCGCGTTTCGGGGCTACGTGT
TTTGTGGTGGGCTGTGATGAAATGTGATAGGTTGCGACATGCCGATATGT
GCTGTGATGTGCTGCGATGGGATAGGGTGGGATCTAACTCGCGGCGATGC
CCTGTGATGGGCCATGTTTCTCTGCTCCCCCGCTCGTGTGGCACGAAATG
GAACGTAGTGGCGCGGCGCGATCGGCACCGCCACCCTTCTTGCCATTTCG
CTCGCTGTCCCATCGAGCTCTCCCGCAATGCGAGCACCGTTCTCGCTCAG
GCGTGCCCCTCGCCCTCGACCCCCCGTGCCCAGCTTTGCAGTGCCTGCGG
GCAGGGCAACGCGGATGTGTCTCACCCACAGATGGGGCACGAGTGCACGC
GTGGTCTCAAAGGGTCAGATCGCCGGAGCTTCAGAATCAGCGGTTCGACG
AGAGACACTTCCGTGGACGTAAACGGCGCCTCTGTTTTTTCCTTTTCTAT
GCGTGGGGCTGTGTGTGCTCTCTCCTACCGCGTTTCGGGGCTACGTGTTT
TGTGGTGGGCTGTGATGAAATGTGATAGGTTGCGACATGCCGATATGTGC
TGTGATGTGCTGCGATGGGATAGGGTGGGATCTAACTCGCGGCGATGCCC
TGTGATGGGCCATGTTTCTCTGCTCCCCCGCTCGTGTGGCACGAAATGGA
ACGTAGTGGCGCGGCGCGATCGGCACCGCCACCCTTCTTGCCATTTCGCT
CGCTGTCCCATCGAGCTCTCCCGCAATGCGAGCACCGTTCTCGCTCAGGC
GTGCCCCTCGCCCTCGACCCCCCGTGCCCAGCTTTGCAGTGCCTGCGGGC
AGGGCAACGCGGATGTGTCTCACCCACAGATGGGGCACGAGTGCACGCGT
GGTCTCAAAGGGTCAGATCGCCGGAGCTTCAGAATCAGCGGTTCGACGAG
AGACACTTCCGTGGACGTAAACGGCGCCTCTGTTTTTTCCTTTTCT
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