mRNA_H-canaliculatus_F_contig13315.2709.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13315.2709.1
Unique NamemRNA_H-canaliculatus_F_contig13315.2709.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13315.2709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13315contigH-canaliculatus_F_contig13315:867..1379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size180
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929070.887598-CDS-H-canaliculatus_F_contig13315:868..9521622929070.887598-CDS-H-canaliculatus_F_contig13315:868..952Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13315 869..952 -
1696845668.4976368-CDS-H-canaliculatus_F_contig13315:868..9521696845668.4976368-CDS-H-canaliculatus_F_contig13315:868..952Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13315 869..952 -
1622929070.9040012-CDS-H-canaliculatus_F_contig13315:1286..13791622929070.9040012-CDS-H-canaliculatus_F_contig13315:1286..1379Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13315 1287..1379 -
1696845668.506105-CDS-H-canaliculatus_F_contig13315:1286..13791696845668.506105-CDS-H-canaliculatus_F_contig13315:1286..1379Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13315 1287..1379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13315.2709.1prot_H-canaliculatus_F_contig13315.2709.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13315 869..1379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13315.2709.1

>prot_H-canaliculatus_F_contig13315.2709.1 ID=prot_H-canaliculatus_F_contig13315.2709.1|Name=mRNA_H-canaliculatus_F_contig13315.2709.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=59bp
DGFPRERGRAAGHVRRGSSRLELAARTQVRRLRIASGHRQHDPQEQQQQQ
QQQQPQRSR
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mRNA from alignment at H-canaliculatus_F_contig13315:867..1379-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13315.2709.1 ID=mRNA_H-canaliculatus_F_contig13315.2709.1|Name=mRNA_H-canaliculatus_F_contig13315.2709.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=513bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13315:867..1379- (Hapterophycus canaliculatus Oshoro5f female)
GACGGCTTTCCTCGTGAACGCGGAAGAGCTGCTGGACACGTACGGCGTGG
AAGTTCCAGACTTGAGCTTGCCGCCCGCACACAAGTTCGACGGGTGAGTC
CGCCCGTCCGCCCAGCAGAAGTTCGTCCGAGTTCTGTGGTGGGAGCACCT
TGCTCGAAATCGTTGCGGCTGCGGGAGGGCGGGTGACGTAGCACACGCGT
GTCTGTTGTCAGGGTTTCCAACCCGAACGTCTTTTTTGTTGTACAGCAAC
GAAATATACATTTTCGCGGGGGCAGAGGTCCTGTTTGTTCGCCGTCACCT
CTGAGCATGTTTCGCCAGCGTGTCCGAGCCGAGCGGTTGCCGCAGTCTCT
GCTGAACCTTTCTTTCGGGACATCTCCCCCCCCCCGTTGTCTCTTGTCTG
TCTCTCTGTCGACCCCACCACATCCAGCTCCGAATTGCCAGTGGACATCG
CCAGCACGATCCACAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCAC
AGCGCTCCCGCCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13315:867..1379-

>mRNA_H-canaliculatus_F_contig13315.2709.1 ID=mRNA_H-canaliculatus_F_contig13315.2709.1|Name=mRNA_H-canaliculatus_F_contig13315.2709.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=354bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13315:867..1379- (Hapterophycus canaliculatus Oshoro5f female)
GACGGCTTTCCTCGTGAACGCGGAAGAGCTGCTGGACACGTACGGCGTGG
AAGTTCCAGACTTGAGCTTGCCGCCCGCACACAAGTTCGACGGGACGGCT
TTCCTCGTGAACGCGGAAGAGCTGCTGGACACGTACGGCGTGGAAGTTCC
AGACTTGAGCTTGCCGCCCGCACACAAGTTCGACGGCTCCGAATTGCCAG
TGGACATCGCCAGCACGATCCACAAGAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCCACAGCGCTCCCGCCTCCGAATTGCCAGTGGACATCGCCAGCAC
GATCCACAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCACAGCGCTC
CCGC
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