mRNA_H-canaliculatus_F_contig13307.2704.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13307.2704.1
Unique NamemRNA_H-canaliculatus_F_contig13307.2704.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13307.2704.1 vs. uniprot
Match: D8LQP7_ECTSI (Choline/ethanolaminephosphotransferase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP7_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 1.370e-79
Identity = 112/124 (90.32%), Postives = 118/124 (95.16%), Query Frame = 1
Query:    1 VLSDQDLDMIAAYKYKPGAYTHLDDLLTPFWNWAVTLLPLWMAPNLVTFLGLAGTCFASLLVTSYSPGLEGDHVPGWCCLLFAAALFLYQTLDAIDGKQARRTNSSSPLGQLFDHGCDAAVKVG 372
            +LS+QDLDMIAAYKYKPGAYTHLD+LLTPFWNWAVTLLP+WMAPNLVTF+GLAGTC ASLLVTSYSPGLEG+ VP WC LLFA ALFLYQTLDAIDGKQARRTNSSSPLGQLFDHGCDAAVK G
Sbjct:   20 MLSNQDLDMIAAYKYKPGAYTHLDNLLTPFWNWAVTLLPMWMAPNLVTFIGLAGTCLASLLVTSYSPGLEGETVPSWCSLLFALALFLYQTLDAIDGKQARRTNSSSPLGQLFDHGCDAAVKQG 143          
BLAST of mRNA_H-canaliculatus_F_contig13307.2704.1 vs. uniprot
Match: A0A6H5KH10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH10_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 1.550e-76
Identity = 113/123 (91.87%), Postives = 118/123 (95.93%), Query Frame = 1
Query:    1 VLSDQDLDMIAAYKYKPGAYTHLDDLLTPFWNWAVTLLPLWMAPNLVTFLGLAGTCFASLLVTSYSPGLEGDHVPGWCCLLFAAALFLYQTLDAIDGKQARRTNSSSPLGQLFDHGCDAAVKV 369
            +LS QDLDMIAAYKYKPGAYTHLD+LLTPFWNWAVTLLP+WMAPNLVTF+GLAGTC ASLLVTSYSPGLEG+ VPGWC LLFA ALFLYQTLDAIDGKQARRTNSSSPLGQLFDHGCDAAVKV
Sbjct:   20 MLSKQDLDMIAAYKYKPGAYTHLDNLLTPFWNWAVTLLPVWMAPNLVTFIGLAGTCLASLLVTSYSPGLEGETVPGWCSLLFALALFLYQTLDAIDGKQARRTNSSSPLGQLFDHGCDAAVKV 142          
BLAST of mRNA_H-canaliculatus_F_contig13307.2704.1 vs. uniprot
Match: A0A836CB46_9STRA (CDP-alcohol phosphatidyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB46_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.080e-47
Identity = 78/122 (63.93%), Postives = 93/122 (76.23%), Query Frame = 1
Query:    4 LSDQDLDMIAAYKYKPGAYTHLDDLLTPFWNWAVTLLPLWMAPNLVTFLGLAGTCFASLLVTSYSPGLEGDHVPGWCCLLFAAALFLYQTLDAIDGKQARRTNSSSPLGQLFDHGCDAAVKV 369
            L++ +L+ I  Y YKPG YTHLD+LLTP+WNWAVTLLP W APNLVTF+GL    F +++    SP L+   +PGW  + +A  LF YQTLDAIDGKQARRTNSSSPLGQLFDHGCDA V +
Sbjct:   29 LTETELERIRVYSYKPGVYTHLDNLLTPYWNWAVTLLPSWAAPNLVTFVGLLTVVFWTVVFLVQSPDLK-QPIPGWQVVAYAVGLFFYQTLDAIDGKQARRTNSSSPLGQLFDHGCDALVLL 149          
BLAST of mRNA_H-canaliculatus_F_contig13307.2704.1 vs. uniprot
Match: A0A6G0WZM9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZM9_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.150e-40
Identity = 75/119 (63.03%), Postives = 85/119 (71.43%), Query Frame = 1
Query:    1 VLSDQDLDMIAAYKYKPGAYTHLDDLLTPFWNWAVTLLPLWMAPNLVTFLGLAGTCFASLLVTSYSPGLEGDHVPGWCCLLFAAALFLYQTLDAIDGKQARRTNSSSPLGQLFDHGCDA 357
            VLS Q L+ IAAYKYKPG+YT+LD  L  FWN AV  LP+WMAPNLVT  G       + ++  +SP LEG   P W  L+    LF+YQTLDAIDGKQARRT SSSPLGQLFDHGCDA
Sbjct:    3 VLSKQALEGIAAYKYKPGSYTYLDLQLNHFWNAAVEFLPMWMAPNLVTLSGTILAAVTTAVLLYFSPQLEGG-APAWTYLMCGVGLFVYQTLDAIDGKQARRTGSSSPLGQLFDHGCDA 120          
BLAST of mRNA_H-canaliculatus_F_contig13307.2704.1 vs. uniprot
Match: A0A024UK12_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UK12_9STRA)

HSP 1 Score: 147 bits (371), Expect = 2.260e-40
Identity = 77/119 (64.71%), Postives = 83/119 (69.75%), Query Frame = 1
Query:    1 VLSDQDLDMIAAYKYKPGAYTHLDDLLTPFWNWAVTLLPLWMAPNLVTFLGLAGTCFASLLVTSYSPGLEGDHVPGWCCLLFAAALFLYQTLDAIDGKQARRTNSSSPLGQLFDHGCDA 357
            VLS Q L+ IAAYKYK G+YT LD  L  FWN  V  LPLWMAPNLVT  G     F + L+   SP LEG   PGW  +L    LF+YQTLDAIDGKQARRT SSSPLGQLFDHGCDA
Sbjct:    3 VLSKQALEGIAAYKYKAGSYTFLDLQLNHFWNAMVEFLPLWMAPNLVTLTGTIIVVFTTALLLVISPKLEGG-APGWAYVLSGVGLFVYQTLDAIDGKQARRTGSSSPLGQLFDHGCDA 120          
BLAST of mRNA_H-canaliculatus_F_contig13307.2704.1 vs. uniprot
Match: W4H6P1_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H6P1_9STRA)

HSP 1 Score: 147 bits (370), Expect = 3.250e-40
Identity = 75/119 (63.03%), Postives = 84/119 (70.59%), Query Frame = 1
Query:    1 VLSDQDLDMIAAYKYKPGAYTHLDDLLTPFWNWAVTLLPLWMAPNLVTFLGLAGTCFASLLVTSYSPGLEGDHVPGWCCLLFAAALFLYQTLDAIDGKQARRTNSSSPLGQLFDHGCDA 357
            VLS Q L+ IAAYKYK G+YT LD  L  FWN  V  LPLWMAPNLVT  G       ++L+ + SP +EG   PGW  +L    LF+YQTLDAIDGKQARRT SSSPLGQLFDHGCDA
Sbjct:    3 VLSKQALEGIAAYKYKAGSYTFLDLQLNHFWNAMVEFLPLWMAPNLVTLTGTIIVILTTVLLLAISPNMEGG-APGWAYVLSGVGLFVYQTLDAIDGKQARRTGSSSPLGQLFDHGCDA 120          
BLAST of mRNA_H-canaliculatus_F_contig13307.2704.1 vs. uniprot
Match: A0A2D4BY50_PYTIN (CDP-alcohol phosphatidyltransferase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BY50_PYTIN)

HSP 1 Score: 146 bits (369), Expect = 4.470e-40
Identity = 76/123 (61.79%), Postives = 85/123 (69.11%), Query Frame = 1
Query:    1 VLSDQDLDMIAAYKYKPGAYTHLDDLLTPFWNWAVTLLPLWMAPNLVTFLGLAGTCFASLLVTSYSPGLEGDHVPGWCCLLFAAALFLYQTLDAIDGKQARRTNSSSPLGQLFDHGCDAAVKV 369
            +LS + L+ IAAYKYK G YT LD+ L  FWN AV LLP WMAPNLVT LG       +++   YSP L  +  P W  LL A  LFLYQTLDA+DGKQARRT SSSPLGQLFDHGCDA   V
Sbjct:    3 MLSKKALEGIAAYKYKSGTYTFLDNQLNHFWNAAVELLPKWMAPNLVTMLGTIIMMLTTVVQLYYSPHLS-EPAPAWVYLLSAVGLFLYQTLDALDGKQARRTGSSSPLGQLFDHGCDALCTV 124          
BLAST of mRNA_H-canaliculatus_F_contig13307.2704.1 vs. uniprot
Match: A0A0H5R6A0_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R6A0_9EUKA)

HSP 1 Score: 143 bits (361), Expect = 5.260e-39
Identity = 70/119 (58.82%), Postives = 86/119 (72.27%), Query Frame = 1
Query:    1 VLSDQDLDMIAAYKYKPGAYTHLDDLLTPFWNWAVTLLPLWMAPNLVTFLGLAGTCFASLLVTSYSPGLEGDHVPGWCCLLFAAALFLYQTLDAIDGKQARRTNSSSPLGQLFDHGCDA 357
            VL D  L  +A Y+Y  G Y ++D ++TPFWNWAVTLLP+ +APNLVT L L     A++LV + SP L  D +P W  +  A +LF+YQTLDAIDGKQARRT SSS LGQLFDHGCD+
Sbjct:    3 VLDDSQLRALAKYQYSSGLYGYIDTIMTPFWNWAVTLLPMTLAPNLVTLLALLFMSLAAVLVATKSPMLT-DPLPPWVLVYSATSLFIYQTLDAIDGKQARRTKSSSALGQLFDHGCDS 120          
BLAST of mRNA_H-canaliculatus_F_contig13307.2704.1 vs. uniprot
Match: A0A484EEL2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EEL2_BRELC)

HSP 1 Score: 143 bits (361), Expect = 7.780e-39
Identity = 67/123 (54.47%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    1 VLSDQDLDMIAAYKYKPGAYTHLDDLLTPFWNWAVTLLPLWMAPNLVTFLGLAGTCFASLLVTSYSPGLEGDHVPGWCCLLFAAALFLYQTLDAIDGKQARRTNSSSPLGQLFDHGCDAAVKV 369
            +L  + L+ IAAYKYK G+YT+LDD+L  FW ++V  LP+WMAPNLVT +G   T   +++   Y+P    +  P W  +L A  LF+YQT+DA+DGKQARRT +SSPLGQLFDHGCDA   V
Sbjct:    1 MLDKKALEGIAAYKYKAGSYTYLDDVLNQFWTYSVRFLPIWMAPNLVTMIGTGVTMLTTVIQLYYAPHFL-ETCPAWVYILSALGLFIYQTMDALDGKQARRTGASSPLGQLFDHGCDAVCTV 122          
BLAST of mRNA_H-canaliculatus_F_contig13307.2704.1 vs. uniprot
Match: A0A7S0YE95_9CHLO (Hypothetical protein n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0YE95_9CHLO)

HSP 1 Score: 143 bits (360), Expect = 1.050e-38
Identity = 68/119 (57.14%), Postives = 79/119 (66.39%), Query Frame = 1
Query:    1 VLSDQDLDMIAAYKYKPGAYTHLDDLLTPFWNWAVTLLPLWMAPNLVTFLGLAGTCFASLLVTSYSPGLEGDHVPGWCCLLFAAALFLYQTLDAIDGKQARRTNSSSPLGQLFDHGCDA 357
            +LS + L+ I AYKYKPG YT LDDL TPFWNW    LP+W+APNL+T  GL       +++  YSP    D  P W   L A A+  Y  +D IDGKQARRT SSSPLGQLFDHGCDA
Sbjct:    3 ILSQRALEGIKAYKYKPGGYTKLDDLHTPFWNWLTNKLPMWLAPNLITLTGLFALIIGYVVMWIYSPNYT-DDAPNWVYSLGAVAVVFYTNMDCIDGKQARRTGSSSPLGQLFDHGCDA 120          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13307.2704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQP7_ECTSI1.370e-7990.32Choline/ethanolaminephosphotransferase, partial n=... [more]
A0A6H5KH10_9PHAE1.550e-7691.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CB46_9STRA1.080e-4763.93CDP-alcohol phosphatidyltransferase-domain-contain... [more]
A0A6G0WZM9_9STRA1.150e-4063.03Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UK12_9STRA2.260e-4064.71Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4H6P1_9STRA3.250e-4063.03Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A2D4BY50_PYTIN4.470e-4061.79CDP-alcohol phosphatidyltransferase, putative n=1 ... [more]
A0A0H5R6A0_9EUKA5.260e-3958.82Uncharacterized protein n=1 Tax=Spongospora subter... [more]
A0A484EEL2_BRELC7.780e-3954.47Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A7S0YE95_9CHLO1.050e-3857.14Hypothetical protein n=1 Tax=Polytomella parva Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13307contigH-canaliculatus_F_contig13307:316..699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.9
Seed ortholog evalue5.1e-57
Seed eggNOG ortholog2880.D8LQP7
KEGG rclassRC00002,RC00017,RC02894
KEGG koko:K00993,ko:K06943
KEGG ReactionR02057,R04920,R06364,R07384
KEGG Pathwayko00440,ko00564,ko00565,ko01100,ko01110,ko03008,map00440,map00564,map00565,map01100,map01110,map03008
KEGG ModuleM00092
EggNOG free text desc.diacylglycerol cholinephosphotransferase activity
EggNOG OGsCOG5050@1,KOG2877@2759
EC2.7.8.1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Hectar predicted targeting categorysignal anchor
Exons1
Model size384
Cds size360
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929069.8161724-CDS-H-canaliculatus_F_contig13307:315..6751622929069.8161724-CDS-H-canaliculatus_F_contig13307:315..675Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13307 316..675 -
1696845668.0860176-CDS-H-canaliculatus_F_contig13307:315..6751696845668.0860176-CDS-H-canaliculatus_F_contig13307:315..675Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13307 316..675 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929069.8275065-UTR-H-canaliculatus_F_contig13307:675..6991622929069.8275065-UTR-H-canaliculatus_F_contig13307:675..699Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13307 676..699 -
1696845668.1025047-UTR-H-canaliculatus_F_contig13307:675..6991696845668.1025047-UTR-H-canaliculatus_F_contig13307:675..699Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13307 676..699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13307.2704.1prot_H-canaliculatus_F_contig13307.2704.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13307 316..675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13307.2704.1

>prot_H-canaliculatus_F_contig13307.2704.1 ID=prot_H-canaliculatus_F_contig13307.2704.1|Name=mRNA_H-canaliculatus_F_contig13307.2704.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=120bp
MIAAYKYKPGAYTHLDDLLTPFWNWAVTLLPLWMAPNLVTFLGLAGTCFA
SLLVTSYSPGLEGDHVPGWCCLLFAAALFLYQTLDAIDGKQARRTNSSSP
LGQLFDHGCDAAVKVGAWG*
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mRNA from alignment at H-canaliculatus_F_contig13307:316..699-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13307.2704.1 ID=mRNA_H-canaliculatus_F_contig13307.2704.1|Name=mRNA_H-canaliculatus_F_contig13307.2704.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=384bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13307:316..699- (Hapterophycus canaliculatus Oshoro5f female)
GTGCTCTCGGACCAGGATCTGGACATGATCGCCGCGTACAAGTACAAGCC CGGCGCGTACACCCACCTCGACGATCTGCTCACACCGTTCTGGAACTGGG CGGTGACCCTGCTCCCCCTCTGGATGGCGCCTAACCTCGTGACCTTCCTC GGCTTGGCGGGGACTTGCTTCGCGTCTTTGCTGGTGACGAGCTACAGCCC GGGCCTCGAAGGGGACCACGTGCCTGGGTGGTGTTGCCTGTTGTTCGCCG CGGCGCTGTTCTTGTACCAGACCCTCGACGCCATCGACGGAAAACAGGCC CGGAGAACGAACAGCTCGAGCCCCCTTGGGCAGCTTTTCGACCACGGCTG CGACGCGGCCGTAAAGGTGGGTGCCTGGGGATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13307:316..699-

>mRNA_H-canaliculatus_F_contig13307.2704.1 ID=mRNA_H-canaliculatus_F_contig13307.2704.1|Name=mRNA_H-canaliculatus_F_contig13307.2704.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=720bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13307:316..699- (Hapterophycus canaliculatus Oshoro5f female)
ATGATCGCCGCGTACAAGTACAAGCCCGGCGCGTACACCCACCTCGACGA
TCTGCTCACACCGTTCTGGAACTGGGCGGTGACCCTGCTCCCCCTCTGGA
TGGCGCCTAACCTCGTGACCTTCCTCGGCTTGGCGGGGACTTGCTTCGCG
TCTTTGCTGGTGACGAGCTACAGCCCGGGCCTCGAAGGGGACCACGTGCC
TGGGTGGTGTTGCCTGTTGTTCGCCGCGGCGCTGTTCTTGTACCAGACCC
TCGACGCCATCGACGGAAAACAGGCCCGGAGAACGAACAGCTCGAGCCCC
CTTGGGCAGCTTTTCGACCACGGCTGCGACGCGGCCGTAAAGGTGGGTGC
CTGGGGATGAATGATCGCCGCGTACAAGTACAAGCCCGGCGCGTACACCC
ACCTCGACGATCTGCTCACACCGTTCTGGAACTGGGCGGTGACCCTGCTC
CCCCTCTGGATGGCGCCTAACCTCGTGACCTTCCTCGGCTTGGCGGGGAC
TTGCTTCGCGTCTTTGCTGGTGACGAGCTACAGCCCGGGCCTCGAAGGGG
ACCACGTGCCTGGGTGGTGTTGCCTGTTGTTCGCCGCGGCGCTGTTCTTG
TACCAGACCCTCGACGCCATCGACGGAAAACAGGCCCGGAGAACGAACAG
CTCGAGCCCCCTTGGGCAGCTTTTCGACCACGGCTGCGACGCGGCCGTAA
AGGTGGGTGCCTGGGGATGA
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