mRNA_H-canaliculatus_F_contig133.2700.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig133.2700.1
Unique NamemRNA_H-canaliculatus_F_contig133.2700.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig133.2700.1 vs. uniprot
Match: D8LC03_ECTSI (HET-R n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC03_ECTSI)

HSP 1 Score: 421 bits (1081), Expect = 2.190e-135
Identity = 288/560 (51.43%), Postives = 350/560 (62.50%), Query Frame = 2 
Query:  209 YAKVSDPGLHVGGVK------LMPGK-VFSAGAMGWRHIDPGKTSSVGDVDLSCLSHTENSDVIEERRRGR-RKLQVSVENTSPSGQPRQGKPTPVEDADKAFGARRIPSGYRDRTSLSPSKKATNCGPGLEAGPEERRINQLTSPL-IRTEIPDPGRKPAARTCVPRESLATTRARVRDLQSRGRPQQQTNTGRSLAVAKKRKD-EPRCQDTTVFVGHSEQVLSLAHRKDILFSAAADGTAKAWDTYTQRCLATYEGHRNAVXXXXXXXXXXXXXXXXXXXXXXXXXTAQSLHVIDLRSAVRDVVVVGGFLAVATSSPGVEVIDLNSMRRHGILEGHLMAVSALTSLRGEACLVSGSHDTFISRVWDPKTGNCEALLGGHRGTVGALCTVSCPSPRLAHGKAHPGGEAESGADTLIVSGSGDTTVRVWGH-AAGGAGAGEWACRAVLEGHRHGVWAVDSSFLSGAFATGGGDATIKLWAPTKSFGDVNDGGDIYRKDERPSRENEQQEQTRR--WECVGGVRGAAGAVGAILMSEHELVFGTSEAVIARFPLQLCMPGR 1849
            Y++    G   GGV         PG  VFS G  GW   DP  +SS  +  ++  S  E    +E    GR R +  S    SP  Q R+   T +  A  A   +R      +R S SP+ + +  G   +A P   R N   SP  +  + P  GR+   +   P +++A  R RVRD+Q+R RP++Q   GR      +R + +P+ + + VF+GHSEQVL+LA  +DILFSA+ADGTAKAWDT +Q+CLATY+GH  AV        XXXXXXXXXXXXXXXX TAQSL V+DLRSAVRDVV+VG FLAVATS+PG+E+++L  MRRHG LEGHL+AVSAL SL GE  LVSGSHDTFI RVWDP T   +A+LGGH GTVGA+CTVS P     H K        +  + LIVSGSGD T RVWG    G  G  EW CRAVLEGHRHGVWAV  S LSGAFATGGGDAT+KLWAPT +  +   G +   +    S E+  Q       WE VGGVRG AGAVGA+L+ E  LVFGTSEA+IARFPLQLCMP R
Sbjct:  162 YSQGPHHGASGGGVSGGENSGRRPGTAVFSVG--GW---DPSYSSSTKETTVARRS--ERPGEVEPATAGRWRGVHFSKAKHSPPEQQRRDTTTGIGSAPDASSRQR----GGERASFSPTDRWSGFGSKSDASPARLRSNDHRSPREMGGQRPYVGRETVEQEGAPLKTVAAMRGRVRDMQARRRPRRQERGGRMPPADSRRGEGDPKLRSSAVFIGHSEQVLALARCEDILFSASADGTAKAWDTCSQQCLATYKGHHGAVWGMQVTGRXXXXXXXXXXXXXXXXETAQSLSVLDLRSAVRDVVMVGDFLAVATSNPGIEIVELKRMRRHGTLEGHLLAVSALASLEGENLLVSGSHDTFI-RVWDPDTLTSKAVLGGHGGTVGAICTVSWPQGGHDHAK-------RAAEEALIVSGSGDGTARVWGQQGVGDKGQREWTCRAVLEGHRHGVWAVYGSSLSGAFATGGGDATVKLWAPTTT-NNAEHGNEEAERGNLGSGESRHQXXXXXXXWELVGGVRGTAGAVGAVLIDEQALVFGTSEALIARFPLQLCMPAR 701
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BLAST of mRNA_H-canaliculatus_F_contig133.2700.1 vs. uniprot
Match: A0A6H5JEV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV4_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.170e-13
Identity = 54/130 (41.54%), Postives = 82/130 (63.08%), Query Frame = 2 
Query:  524 DRTSLSPSKKATNCGPGLEAGPEERRINQLTSPL-IRTEIPDPGRKPAARTCVPRESLATTRARVRDLQSRGRPQQQTNTGRSLAVAKKRKD-EPRCQDTTVFVGHSEQVLSLAHRKDILFSAAADGTAK 907
            +R S SP+ +++  G   +A P   R N   SP  +  + P   R+   +   P E +A  R+RVRD+Q+RGRP+++   GR      +R + +PR + ++VF+GHS+QVL+LA R+DILFSA+ADGTAK
Sbjct:  265 ERASFSPTGRSSVFGSESDASPPRPRRNDHRSPREMGGQRPYAERETVEQGGAPLEPVAAMRSRVRDMQARGRPRRKERGGRMPPADSRRGEGDPRLR-SSVFIGHSKQVLALARREDILFSASADGTAK 393
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BLAST of mRNA_H-canaliculatus_F_contig133.2700.1 vs. uniprot
Match: A0A7S4B599_CHRCT (Hypothetical protein (Fragment) n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B599_CHRCT)

HSP 1 Score: 69.3 bits (168), Expect = 1.690e-8
Identity = 68/212 (32.08%), Postives = 89/212 (41.98%), Query Frame = 2 
Query: 1112 LAVATSSPGVEVIDLNSMRRHGILEGHLMAVSALTSLRGEACLVSGSHDTFISRVWDPKTGNCEALLGGHRGTVGAL----------------------------CTVSCP-----SPR-----LAHGKAHPGGEAESGADTLIVSGSGDTTVRVWGHAAGGAGAGEWACRAVLE------GHRHGVWAVDSSFLSGAFATGGGDATIKLWA 1615
            LAVAT+S  + + +++SM    +L GH   V AL        + S S D   +RVWD  T  C A   GH   VGA+                            C  S       SPR     LAH K      A +  D L+++GS D T++VWG A G    G      VL+      GHR GVWA   S +    A+  GD TIK+W+
Sbjct:  379 LAVATNSEQIRLFEVHSMSCR-LLSGHTDIVLALDVSADGHWIGSASKD-LCARVWDAVTAKCVAKCAGHVEAVGAVAFGRRGAFLLXXXXXXXXXLWDLKPLAACRASGKYEKELSPRALSTVLAHSK-DINTLAVAPNDRLVITGSQDRTLKVWGAADGAVATGMLPLPGVLKEVATLSGHRRGVWAAAFSPVDKVAASASGDMTIKVWS 587
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BLAST of mRNA_H-canaliculatus_F_contig133.2700.1 vs. uniprot
Match: A0A166ICK4_9AGAM (WD40 repeat-like protein n=1 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A166ICK4_9AGAM)

HSP 1 Score: 67.8 bits (164), Expect = 4.990e-8
Identity = 64/194 (32.99%), Postives = 91/194 (46.91%), Query Frame = 2 
Query: 1139 VEVIDLNSMRRHGILEGHLMAVSALTSL-----------------RGEACLVSGSHDTFISRVWDPKTGNCEALLGGHRGTVGAL-CTVSCPSPRLAHGKAHPGGEAESGAD-TLIVSGSGDTTVRVWGHAA------GGAGA-----------GEWACRAVLEGHRHGVWAVDSSFLSGAFATGGGDATIKLW 1612
            V V D+ +     +L GH   V  L +L                  G A +VSG+ D  + R+WD +TG C  ++ GH  +V A+   V+ P+P L   +    G+ +SG+   ++VSGS DTTVRVW   A      GG GA           G   CR VL GH   V+ V    +    A+GG DAT+++W
Sbjct:  489 VRVWDVRTGHCLHVLRGHNATVRCLAALPEVPVSPGPRPLRSSAGAGTAHIVSGARDGTL-RLWDVRTGACVGVMRGHTESVRAVDVAVTPPAPALDDCEL---GQGQSGSGRVVVVSGSYDTTVRVWDVCARPVGGEGGDGAXXXXXXXDREGGFGRCRWVLRGHTQQVYVVACDGVR--VASGGLDATVRVW 676
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BLAST of mRNA_H-canaliculatus_F_contig133.2700.1 vs. uniprot
Match: A0A166HEL5_9AGAM (WD40 repeat-like protein n=1 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A166HEL5_9AGAM)

HSP 1 Score: 67.8 bits (164), Expect = 5.000e-8
Identity = 64/194 (32.99%), Postives = 91/194 (46.91%), Query Frame = 2 
Query: 1139 VEVIDLNSMRRHGILEGHLMAVSALTSL-----------------RGEACLVSGSHDTFISRVWDPKTGNCEALLGGHRGTVGAL-CTVSCPSPRLAHGKAHPGGEAESGAD-TLIVSGSGDTTVRVWGHAA------GGAGA-----------GEWACRAVLEGHRHGVWAVDSSFLSGAFATGGGDATIKLW 1612
            V V D+ +     +L GH   V  L +L                  G A +VSG+ D  + R+WD +TG C  ++ GH  +V A+   V+ P+P L   +    G+ +SG+   ++VSGS DTTVRVW   A      GG GA           G   CR VL GH   V+ V    +    A+GG DAT+++W
Sbjct:  460 VRVWDVRTGHCLHVLRGHNATVRCLAALPEVPVSPGPRPLRSSAGAGTAHIVSGARDGTL-RLWDVRTGACVGVMRGHTESVRAVDVAVAPPAPALDDCEL---GQGQSGSGRVVVVSGSYDTTVRVWDVCARPVGGEGGDGAXXXXXXXDREGGFGRCRWVLRGHTQQVYVVACDGVR--VASGGLDATVRVW 647
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BLAST of mRNA_H-canaliculatus_F_contig133.2700.1 vs. uniprot
Match: A0A7S0LD29_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LD29_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 1.480e-5
Identity = 65/213 (30.52%), Postives = 83/213 (38.97%), Query Frame = 2 
Query: 1112 LAVATSSPGVEVIDLNSMRRHGILEGHLMAVSALTSLRGEACLVSGSHDTFISRVWDPKTGNCEA---------------------------------------LLGGHRGTVGALCTVSCPSPRLAHGKAHPGGEAESGADTLIVSGSGDTTVRVWGHAAGGAGAGEWACR------AVLEGHRHGVWAVDSSFLSGAFATGGGDATIKLWA 1615
            LAVAT+S  + + ++NSM    +L GH   V AL        + S S D  + RVW      C A                                        +G    T  AL TV      LAHGK      A S  D L++SGS D T++V+G   G A AG           A L GHR G+WA   S      A+  GD TIK+W+
Sbjct:  176 LAVATNSEQIRLFEMNSMACR-LLSGHTDIVLALDVSTDGTMIASASKDRTV-RVWAAAGAQCLARCVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLRPLSAVGSVEVTPRALATV------LAHGK-DINTIAVSPNDRLVLSGSQDRTLKVYGAREGAAKAGVHGLLSGMSELATLNGHRRGIWAAAFSPADKVAASASGDMTIKVWS 379
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BLAST of mRNA_H-canaliculatus_F_contig133.2700.1 vs. uniprot
Match: A0A8J2AE57_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2AE57_9DINO)

HSP 1 Score: 59.7 bits (143), Expect = 1.650e-5
Identity = 73/266 (27.44%), Postives = 105/266 (39.47%), Query Frame = 2 
Query:  830 GHSEQVLSLAHRKDILFSAAADGTAKAWDTYTQRCLATYEGHRNAVXXXXXXXXXXXXXXXXXXXXXXXXXTAQSLHVIDLRSAVRDVVVVGGFLAVATSSPGVEVIDLNSMRRHGILEGHLMAVSALT-SLRGEACLVSGSHDTFISRVWDPKTGNCEALLGGHRGTVGALCTVSCPSPRLAHGKAHPGGEAESGADTLIVSGSGDTTVRVWGHAAGGAGAGEWACRAVLEGHRHGVWAVDSSFLSGAFA----TGGGDATIKLW 1612
            GHSE V+S A RKD++ + + D T + WD  + +CLA  +GH N+V                           ++L +  LR         GG     T S G   + L +      L  H   V+ L    RG+  L +G  D  I ++W     +    + GHR  + +LC              HP        D +++SGSGD TVR+W  A               EGH   V  ++  FL GAF     + G D  +KLW
Sbjct:  479 GHSEVVVSTAVRKDVIATGSKDNTVRLWDRVSGQCLACLKGHTNSVLAICFPNKAEDVLFSSGAD--------KTLKMWKLRENPT----AGG-----TGSSGDASLPLLASAEVTRL-AHDKDVNVLAFGPRGDKMLATGGQDKAI-KLWSYPNLDLLGEMTGHRRGIWSLCF-------------HP-------TDKVLLSGSGDATVRLWNLALKS-----------FEGHGGAV--LNVKFL-GAFGMQAMSTGADGLVKLW 691
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BLAST of mRNA_H-canaliculatus_F_contig133.2700.1 vs. uniprot
Match: A0A7S0IP99_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IP99_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 3.330e-5
Identity = 62/207 (29.95%), Postives = 87/207 (42.03%), Query Frame = 2 
Query: 1112 LAVATSSPGVEVIDLNSMRRHGILEGHLMAVSALTSLRGEACLVSGSHDTFISRVWDPKTGNCEALLGGHRGTVGALC----------------------------TVSCPSPR-----LAHGKAHPGGEAESGADTLIVSGSGDTTVRVWGHA-----AGGAGA-GEWACRAVLEGHRHGVWAVDSSFLSGAFATGGGDATIKLWA 1615
            LAVAT+S  + +  + SM    +L GH   V  L  +  +  L++ +     + VW  ++  C A   GH   VGA+                               +  SPR     LAH K      A S  D L++SGS D T++VWG       +GG G  G     A L GH+ GVWAV  S      A+  GD T+K+W+
Sbjct:  173 LAVATNSDQIRLFAMPSMGCR-LLTGHSDIVLGL-DVSADGTLIASASKDRTACVWSAESATCLARCVGHVEAVGAVVFSRXXXXXXXXXXXXXXXXXDLALLASSAATEVSPRAAATALAHAK-DINALAISPNDGLVLSGSQDRTLKVWGARDVGLKSGGRGVLGGLVELATLSGHKRGVWAVAFSPTDKVAASASGDMTVKVWS 376
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BLAST of mRNA_H-canaliculatus_F_contig133.2700.1 vs. uniprot
Match: R7YT04_CONA1 (Utp13 domain-containing protein n=1 Tax=Coniosporium apollinis (strain CBS 100218) TaxID=1168221 RepID=R7YT04_CONA1)

HSP 1 Score: 58.2 bits (139), Expect = 4.590e-5
Identity = 67/293 (22.87%), Postives = 114/293 (38.91%), Query Frame = 2 
Query:  812 DTTVFVGHSEQVLSLAHRKDI------LFSAAADGTAKAW----DTYTQRCLATYEGHRNAVXXXXXXXXXXXXXXXXXXXXXXXXXTAQSLHVIDLRSAVRDVVVVGGFLAVATSSPGVEVIDLNSMRRHG----ILEGHLMAVSALTSLRGEACLVSGSHDTFISRVWDPKTGNCEALLGGHRGTVGALCTVSCPSPRLAHGKAHPGGEAESGADTLIVSGSGDTTVRVWGHAAGGAGAGEWACRAVLEGHRHGV----WA----VDSSFLSGA-FATGGGDATIKLWAPT 1621
            D  V  GH + ++ +    D+      L + A D TA+ W    D  +  C AT+ GH  ++                         +A   + +D   +         F+   +    ++  D++S+++        + H   ++AL          S S D  + ++W  + G  + +L GHR  V  +      +P +            SG+  LI++GSGD TV++W  A       ++AC   LEGH + V    W      DS    GA  A+ GGD  +K+W  T
Sbjct:  425 DVAVLKGHEDIIICM----DVDWSGHWLATGAKDNTARLWRIDPDHNSFTCYATFTGHAESLGAIALPRLAPPAG------------SAAHTNPLDHPPS---------FVITGSQDKTIKRWDISSVKKTTRATYTRKAHDKDINALDVSPSSTLFASASQDRTV-KIWSTEEGETQGVLRGHRRGVWTVRFAPKDTPAI----------GSSGSRGLILTGSGDKTVKIWSLA-------DYACLLTLEGHTNSVLKAVWLHAEKTDSRDKRGAQVASAGGDGLVKVWDAT 674
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BLAST of mRNA_H-canaliculatus_F_contig133.2700.1 vs. uniprot
Match: A0A1I8GW15_9PLAT (ANAPC4_WD40 domain-containing protein n=5 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8GW15_9PLAT)

HSP 1 Score: 57.4 bits (137), Expect = 8.130e-5
Identity = 46/161 (28.57%), Postives = 74/161 (45.96%), Query Frame = 2 
Query: 1139 VEVIDLNSMRRHGILEGHLMAVSALTSLRGEACLVSGSHDTFISRVWDPKTGNCEALLGGHRGTVGALCTVSCPSPRLAHGKAHPGGEAESGADTLIVSGSGDTTVRVWGHAAGGAGAGEWACRAVLEGHRHGVWAVDSSFLSGAFATGGGDATIKLWAPT 1621
            + V+  +S+R+   L GH    SAL +    + L SGS D  I R+W  + G+C+ +L GH   +  L  V  P       +   G ++ S +  L+VS   D  +R+W        AG++   A L GH+  V  V  +     FA+   D +++ W  T
Sbjct:  616 IRVLFTDSVRQFLHLHGHSQPASALAASSDSSLLASGSGDRTI-RLWGLQFGDCQKILRGHDLAIADLAFVPMP-------QGFEGADSSS-SSRLLVSCGADKCLRLWD-------AGKFRRVAALHGHQSAVACVAVAPTGDYFASVDQDGSVRTWQRT 760
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig133.2700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LC03_ECTSI2.190e-13551.43HET-R n=1 Tax=Ectocarpus siliculosus TaxID=2880 Re... [more]
A0A6H5JEV4_9PHAE1.170e-1341.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4B599_CHRCT1.690e-832.08Hypothetical protein (Fragment) n=2 Tax=Chrysotila... [more]
A0A166ICK4_9AGAM4.990e-832.99WD40 repeat-like protein n=1 Tax=Fibularhizoctonia... [more]
A0A166HEL5_9AGAM5.000e-832.99WD40 repeat-like protein n=1 Tax=Fibularhizoctonia... [more]
A0A7S0LD29_9EUKA1.480e-530.52Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A8J2AE57_9DINO1.650e-527.44Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A7S0IP99_9EUKA3.330e-529.95Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
R7YT04_CONA14.590e-522.87Utp13 domain-containing protein n=1 Tax=Coniospori... [more]
A0A1I8GW15_9PLAT8.130e-528.57ANAPC4_WD40 domain-containing protein n=5 Tax=Macr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig133contigH-canaliculatus_F_contig133:55374..58655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score431.8
Seed ortholog evalue4.7e-118
Seed eggNOG ortholog2880.D8LC03
KEGG koko:K03361,ko:K22071
KEGG Pathwayko04111,ko04120,map04111,map04120
KEGG ModuleM00407
GOsGO:0000003,GO:0000151,GO:0000746,GO:0000747,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0006508,GO:0006511,GO:0006807,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019538,GO:0019941,GO:0019953,GO:0022414,GO:0030163,GO:0030674,GO:0031145,GO:0031461,GO:0032991,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0044764,GO:0050789,GO:0050794,GO:0051603,GO:0051704,GO:0051726,GO:0060090,GO:0065007,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
EggNOG OGsKOG0274@1,KOG0274@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03029,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-20_003950.1
Exons6
Model size1852
Cds size1596
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929068.7816432-CDS-H-canaliculatus_F_contig133:55373..556951622929068.7816432-CDS-H-canaliculatus_F_contig133:55373..55695Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig133 55374..55695 -
1696845667.830447-CDS-H-canaliculatus_F_contig133:55373..556951696845667.830447-CDS-H-canaliculatus_F_contig133:55373..55695Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig133 55374..55695 -
1622929068.870019-CDS-H-canaliculatus_F_contig133:56132..563931622929068.870019-CDS-H-canaliculatus_F_contig133:56132..56393Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig133 56133..56393 -
1696845667.8409243-CDS-H-canaliculatus_F_contig133:56132..563931696845667.8409243-CDS-H-canaliculatus_F_contig133:56132..56393Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig133 56133..56393 -
1622929068.8849394-CDS-H-canaliculatus_F_contig133:57030..572271622929068.8849394-CDS-H-canaliculatus_F_contig133:57030..57227Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig133 57031..57227 -
1696845667.8494346-CDS-H-canaliculatus_F_contig133:57030..572271696845667.8494346-CDS-H-canaliculatus_F_contig133:57030..57227Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig133 57031..57227 -
1622929069.4230518-CDS-H-canaliculatus_F_contig133:57377..575421622929069.4230518-CDS-H-canaliculatus_F_contig133:57377..57542Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig133 57378..57542 -
1696845667.861477-CDS-H-canaliculatus_F_contig133:57377..575421696845667.861477-CDS-H-canaliculatus_F_contig133:57377..57542Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig133 57378..57542 -
1622929069.436713-CDS-H-canaliculatus_F_contig133:57708..582411622929069.436713-CDS-H-canaliculatus_F_contig133:57708..58241Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig133 57709..58241 -
1696845667.8799362-CDS-H-canaliculatus_F_contig133:57708..582411696845667.8799362-CDS-H-canaliculatus_F_contig133:57708..58241Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig133 57709..58241 -
1622929069.4544191-CDS-H-canaliculatus_F_contig133:58281..583991622929069.4544191-CDS-H-canaliculatus_F_contig133:58281..58399Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig133 58282..58399 -
1696845667.8941503-CDS-H-canaliculatus_F_contig133:58281..583991696845667.8941503-CDS-H-canaliculatus_F_contig133:58281..58399Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig133 58282..58399 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929069.472804-UTR-H-canaliculatus_F_contig133:58399..586551622929069.472804-UTR-H-canaliculatus_F_contig133:58399..58655Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig133 58400..58655 -
1696845667.903629-UTR-H-canaliculatus_F_contig133:58399..586551696845667.903629-UTR-H-canaliculatus_F_contig133:58399..58655Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig133 58400..58655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig133.2700.1prot_H-canaliculatus_F_contig133.2700.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig133 55374..58399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig133.2700.1

>prot_H-canaliculatus_F_contig133.2700.1 ID=prot_H-canaliculatus_F_contig133.2700.1|Name=mRNA_H-canaliculatus_F_contig133.2700.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=532bp
MPGKVFSAGAMGWRHIDPGKTSSVGDVDLSCLSHTENSDVIEERRRGRRK
LQVSVENTSPSGQPRQGKPTPVEDADKAFGARRIPSGYRDRTSLSPSKKA
TNCGPGLEAGPEERRINQLTSPLIRTEIPDPGRKPAARTCVPRESLATTR
ARVRDLQSRGRPQQQTNTGRSLAVAKKRKDEPRCQDTTVFVGHSEQVLSL
AHRKDILFSAAADGTAKAWDTYTQRCLATYEGHRNAVWGIEVTDRTLITG
SADGTVRFWDIETAQSLHVIDLRSAVRDVVVVGGFLAVATSSPGVEVIDL
NSMRRHGILEGHLMAVSALTSLRGEACLVSGSHDTFISRVWDPKTGNCEA
LLGGHRGTVGALCTVSCPSPRLAHGKAHPGGEAESGADTLIVSGSGDTTV
RVWGHAAGGAGAGEWACRAVLEGHRHGVWAVDSSFLSGAFATGGGDATIK
LWAPTKSFGDVNDGGDIYRKDERPSRENEQQEQTRRWECVGGVRGAAGAV
GAILMSEHELVFGTSEAVIARFPLQLCMPGR*
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mRNA from alignment at H-canaliculatus_F_contig133:55374..58655-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig133.2700.1 ID=mRNA_H-canaliculatus_F_contig133.2700.1|Name=mRNA_H-canaliculatus_F_contig133.2700.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3282bp|location=Sequence derived from alignment at H-canaliculatus_F_contig133:55374..58655- (Hapterophycus canaliculatus Oshoro5f female)
GTTTCCGTAGGAGGATCCTCGGCGCGGAAATATCCTTCCAGCAGTCCGGA
TTCTTCGCGAAGCACTTCCCCCAACAAACGGCCTTGGTACCCTGGTGGTC
GCCGCTCGTCTTCCGGCGGGCGCCATAGGAGTGATCGTGATGATGGCGAA
AATGCGTACGTCGTGCACCGTACGCCTGGAAAGTTGTTCGACGCAAGTGA
TAAAATAGTATGCGAAGGTGAGTGATCCAGGGTTGCACGTAGGTGGGGTG
AAGCTAATGCCGGGTAAAGTCTTCTCAGCGGGGGCGATGGGATGGCGCCA
CATCGACCCTGGAAAAACGTCTTCGGTGGGCGACGTTGATTTATCCTGCT
TGTCTCACACTGAAAACAGCGACGGTTTCGAAAGGCCCTGAGGGAGGCAG
TATATTCGGATCAGTCATCGAGGAGAGAAGAAGGGGACGGAGGAAACTTC
AAGTTTCAGTAGAGAACACGAGCCCATCGGGCCAACCAAGACAAGGTAAG
CCAACGCCGGTCGAAGATGCCGACAAGGCCTTCGGCGCCCGTCGCATTCC
GAGCGGCTATCGCGACCGTACCTCGTTGTCGCCTTCGAAGAAAGCAACGA
ATTGCGGTCCAGGCTTGGAAGCTGGCCCTGAGGAGCGAAGAATCAACCAG
TTAACCTCCCCGCTGATTCGAACGGAGATACCAGATCCTGGAAGAAAACC
GGCGGCGCGAACATGCGTTCCCCGTGAGTCACTTGCGACAACGAGGGCCC
GCGTGAGAGATCTCCAGTCTCGAGGAAGGCCACAACAGCAAACTAATACT
GGAAGATCGCTGGCAGTAGCCAAGAAAAGGAAGGATGAACCGAGGTGCCA
GGACACTACTGTATTCGTTGGACACAGCGAGCAGGTGCTGTCTCTGGCCC
ATCGAAAGGATATCTTGTTTTCAGCGGCTGCTGATGGCACCGCAAAGGTA
AGCGTTCTCTTTCGCCGGTCGATGACGAAAGTAGCCATTCGCTTTCCACG
CCCACGTCATACGGATGACAACTTGAAAAGGGGGCAGTACACTTTCACAG
GTCCCCTGCCCCGCTACGCTGTCCTGTAAACGTACGTCTTGTCCGATGAA
CATAATTTTTCAGGCATGGGACACATACACCCAACGGTGTCTCGCTACAT
ATGAGGGGCATCGCAACGCCGTATGGGGAATTGAAGTCACAGATCGGACG
CTGATCACGGGCAGCGCTGACGGCACAGTTCGGTTCTGGGATATCGAGAC
CGCTCAGTCCCTCCATGTCATTGACTTGGTAAGACTGCCCAGAGTTAAGA
GTCCCGTAGAAGTTAAGTATTCAGCTCTTGTACCGCATGGGTTGCGACCT
TCCCCCCTGGAATGACGCAGACGATACCAAGCATCGCACGTGCAAACCGA
AGACTTATCAACGGTTCCTCTCTGCCAGCGCTCGGCAGTACGAGATGTGG
TAGTTGTCGGCGGTTTTCTGGCCGTAGCAACATCTAGCCCCGGTGTTGAA
GTGATCGACCTCAACAGCATGAGGCGGCACGGCATACTCGAGGGCCACTT
GATGGCGGTTTCCGCTCTGACGTCACTTCGAGGAGAAGCATGCTTGGTTT
CGGGATCGCATGACACGTTCATCAGGTAATCAGCCGTAGCCCGAGCACAT
TAGCATAACCCGCAGAGCAGGACCTCGGCTCCAAGGCTCACACGGCAAGT
GTGTGGCAATACCGTGACCTCCCCCAAAAACATCGGGTGCACGCCTTTGC
TAAGACGTTGTGCACCAACCGGCACAGATAGAGATGTGCAGCCTTCGCAT
GTCCCACCATACATGGGGCGGGCCATCTGTTTGTGCAACACGTCTAGTTG
CTCCGAGGACTCCCCATTTAAAGTATCCCCTTGTGTCCAAAGCAGTGTCG
CCACCTGAATCTGGCAGTCCGCAGTCGCAACCTGGAGGCGACAAACTCCA
ATACATTAGGGTCGTAACCGAATTTTGGGCCACGGGCCATTGTTTCGAGG
TTAGTGTAGAATCTTCGGCTGATCTGTGTTGCTGCATTCCTTCAACTCAG
TGTTCAAATTATTCTTGGGAATGGTTCTTCACATTTTTTTCCTCGAGACC
GGGCCGCAAGTCACCACTGTTTTGTTATTTTGCTCTTTTCCACCCGGGCT
GCGTTCTCTAGTGTTGGATCTGGTTGTGCCTAGCTGCGCCGTACGTATTA
GCCCGAAACGAGACCCCCTCTTTGGTACCCCCTCCATCATTCCAACGCCG
CACTTCTTCGAGCAGGGTCTGGGACCCGAAAACCGGAAACTGCGAAGCGC
TTCTTGGTGGCCACAGGGGCACCGTCGGCGCTCTGTGCACCGTTTCTTGC
CCATCACCGCGGCTCGCCCACGGCAAAGCTCACCCTGGCGGAGAAGCCGA
AAGCGGAGCGGACACACTCATCGTTAGCGGGTCGGGAGACACGACGGTGA
GAGTGTGGGGCCACGCCGCTGGTGGGGCGGGAGCCGGAGAGTGGGCGTGC
CGCGCGGTGCTGGAAGGACACAGGTATGCAGGGCGAGGATGAGTCTATGC
AACATCGCCTTGTATACTCTTTCTTCATTTTTTGTGTGCAAGCACTGGTT
TGCCGCTGTCGACGTCAGCCTCCTCGGTCAAACTTCCAAAATCGACGGAA
TATTTGGAGGCGGTCGTTCACCAACTAGGGGCACTTGTTTAGCCAATGGT
GCTTTGTTATCAGCCTGGGGTGAATTTTAGTGCCTGTGTCTCGAGTGTAT
TAGCTGTGTTAGCAGGGGCGCGATTTGGACAACTTCCTCGTCGCTGAGTC
GATTGAGGTCCGTCGCTTCGTTTGATATCGTGTCGCGTCAAGCCAAGTGT
CAAACCCTCTTGGGCGCACAAACCGGTCCAAGAATTTTTTACAAAAGCCA
AGGATTTTCACTCGAGGGCTCGATCGAATACTCGCCGATCAAACTCTCGC
CAATGATCAGGCATGGGGTGTGGGCAGTGGACAGCTCGTTTCTCTCCGGC
GCCTTTGCGACCGGTGGGGGGGATGCGACCATCAAACTTTGGGCACCGAC
AAAAAGCTTTGGTGATGTTAACGACGGCGGCGACATCTACAGGAAGGATG
AGAGACCCAGTAGGGAAAACGAGCAGCAAGAACAAACCCGGAGATGGGAA
TGCGTGGGAGGCGTAAGGGGCGCCGCCGGAGCCGTGGGGGCGATTCTCAT
GAGTGAGCACGAGTTGGTCTTCGGCACGTCTGAGGCGGTGATCGCCAGGT
TTCCGCTGCAATTATGCATGCCGGGGCGTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig133:55374..58655-

>mRNA_H-canaliculatus_F_contig133.2700.1 ID=mRNA_H-canaliculatus_F_contig133.2700.1|Name=mRNA_H-canaliculatus_F_contig133.2700.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3192bp|location=Sequence derived from alignment at H-canaliculatus_F_contig133:55374..58655- (Hapterophycus canaliculatus Oshoro5f female)
ATGCCGGGTAAAGTCTTCTCAGCGGGGGCGATGGGATGGCGCCACATCGA
CCCTGGAAAAACGTCTTCGGTGGGCGACGTTGATTTATCCTGCTTGTCTC
ACACTGAAAACAGCGACGATGCCGGGTAAAGTCTTCTCAGCGGGGGCGAT
GGGATGGCGCCACATCGACCCTGGAAAAACGTCTTCGGTGGGCGACGTTG
ATTTATCCTGCTTGTCTCACACTGAAAACAGCGACGTCATCGAGGAGAGA
AGAAGGGGACGGAGGAAACTTCAAGTTTCAGTAGAGAACACGAGCCCATC
GGGCCAACCAAGACAAGGTAAGCCAACGCCGGTCGAAGATGCCGACAAGG
CCTTCGGCGCCCGTCGCATTCCGAGCGGCTATCGCGACCGTACCTCGTTG
TCGCCTTCGAAGAAAGCAACGAATTGCGGTCCAGGCTTGGAAGCTGGCCC
TGAGGAGCGAAGAATCAACCAGTTAACCTCCCCGCTGATTCGAACGGAGA
TACCAGATCCTGGAAGAAAACCGGCGGCGCGAACATGCGTTCCCCGTGAG
TCACTTGCGACAACGAGGGCCCGCGTGAGAGATCTCCAGTCTCGAGGAAG
GCCACAACAGCAAACTAATACTGGAAGATCGCTGGCAGTAGCCAAGAAAA
GGAAGGATGAACCGAGGTGCCAGGACACTACTGTATTCGTTGGACACAGC
GAGCAGGTGCTGTCTCTGGCCCATCGAAAGGATATCTTGTTTTCAGCGGC
TGCTGATGGCACCGCAAAGTCATCGAGGAGAGAAGAAGGGGACGGAGGAA
ACTTCAAGTTTCAGTAGAGAACACGAGCCCATCGGGCCAACCAAGACAAG
GTAAGCCAACGCCGGTCGAAGATGCCGACAAGGCCTTCGGCGCCCGTCGC
ATTCCGAGCGGCTATCGCGACCGTACCTCGTTGTCGCCTTCGAAGAAAGC
AACGAATTGCGGTCCAGGCTTGGAAGCTGGCCCTGAGGAGCGAAGAATCA
ACCAGTTAACCTCCCCGCTGATTCGAACGGAGATACCAGATCCTGGAAGA
AAACCGGCGGCGCGAACATGCGTTCCCCGTGAGTCACTTGCGACAACGAG
GGCCCGCGTGAGAGATCTCCAGTCTCGAGGAAGGCCACAACAGCAAACTA
ATACTGGAAGATCGCTGGCAGTAGCCAAGAAAAGGAAGGATGAACCGAGG
TGCCAGGACACTACTGTATTCGTTGGACACAGCGAGCAGGTGCTGTCTCT
GGCCCATCGAAAGGATATCTTGTTTTCAGCGGCTGCTGATGGCACCGCAA
AGGCATGGGACACATACACCCAACGGTGTCTCGCTACATATGAGGGGCAT
CGCAACGCCGTATGGGGAATTGAAGTCACAGATCGGACGCTGATCACGGG
CAGCGCTGACGGCACAGTTCGGTTCTGGGATATCGAGACCGCTCAGTCCC
TCCATGTCATTGACTTGGCATGGGACACATACACCCAACGGTGTCTCGCT
ACATATGAGGGGCATCGCAACGCCGTATGGGGAATTGAAGTCACAGATCG
GACGCTGATCACGGGCAGCGCTGACGGCACAGTTCGGTTCTGGGATATCG
AGACCGCTCAGTCCCTCCATGTCATTGACTTGCGCTCGGCAGTACGAGAT
GTGGTAGTTGTCGGCGGTTTTCTGGCCGTAGCAACATCTAGCCCCGGTGT
TGAAGTGATCGACCTCAACAGCATGAGGCGGCACGGCATACTCGAGGGCC
ACTTGATGGCGGTTTCCGCTCTGACGTCACTTCGAGGAGAAGCATGCTTG
GTTTCGGGATCGCATGACACGTTCATCAGCGCTCGGCAGTACGAGATGTG
GTAGTTGTCGGCGGTTTTCTGGCCGTAGCAACATCTAGCCCCGGTGTTGA
AGTGATCGACCTCAACAGCATGAGGCGGCACGGCATACTCGAGGGCCACT
TGATGGCGGTTTCCGCTCTGACGTCACTTCGAGGAGAAGCATGCTTGGTT
TCGGGATCGCATGACACGTTCATCAGCAGGGTCTGGGACCCGAAAACCGG
AAACTGCGAAGCGCTTCTTGGTGGCCACAGGGGCACCGTCGGCGCTCTGT
GCACCGTTTCTTGCCCATCACCGCGGCTCGCCCACGGCAAAGCTCACCCT
GGCGGAGAAGCCGAAAGCGGAGCGGACACACTCATCGTTAGCGGGTCGGG
AGACACGACGGTGAGAGTGTGGGGCCACGCCGCTGGTGGGGCGGGAGCCG
GAGAGTGGGCGTGCCGCGCGGTGCTGGAAGGACACAGCAGGGTCTGGGAC
CCGAAAACCGGAAACTGCGAAGCGCTTCTTGGTGGCCACAGGGGCACCGT
CGGCGCTCTGTGCACCGTTTCTTGCCCATCACCGCGGCTCGCCCACGGCA
AAGCTCACCCTGGCGGAGAAGCCGAAAGCGGAGCGGACACACTCATCGTT
AGCGGGTCGGGAGACACGACGGTGAGAGTGTGGGGCCACGCCGCTGGTGG
GGCGGGAGCCGGAGAGTGGGCGTGCCGCGCGGTGCTGGAAGGACACAGGC
ATGGGGTGTGGGCAGTGGACAGCTCGTTTCTCTCCGGCGCCTTTGCGACC
GGTGGGGGGGATGCGACCATCAAACTTTGGGCACCGACAAAAAGCTTTGG
TGATGTTAACGACGGCGGCGACATCTACAGGAAGGATGAGAGACCCAGTA
GGGAAAACGAGCAGCAAGAACAAACCCGGAGATGGGAATGCGTGGGAGGC
GTAAGGGGCGCCGCCGGAGCCGTGGGGGCGATTCTCATGAGTGAGCACGA
GTTGGTCTTCGGCACGTCTGAGGCGGTGATCGCCAGGTTTCCGCTGCAAT
TATGCATGCCGGGGCGTTGAGCATGGGGTGTGGGCAGTGGACAGCTCGTT
TCTCTCCGGCGCCTTTGCGACCGGTGGGGGGGATGCGACCATCAAACTTT
GGGCACCGACAAAAAGCTTTGGTGATGTTAACGACGGCGGCGACATCTAC
AGGAAGGATGAGAGACCCAGTAGGGAAAACGAGCAGCAAGAACAAACCCG
GAGATGGGAATGCGTGGGAGGCGTAAGGGGCGCCGCCGGAGCCGTGGGGG
CGATTCTCATGAGTGAGCACGAGTTGGTCTTCGGCACGTCTGAGGCGGTG
ATCGCCAGGTTTCCGCTGCAATTATGCATGCCGGGGCGTTGA
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