mRNA_H-canaliculatus_F_contig133.2695.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig133.2695.1
Unique NamemRNA_H-canaliculatus_F_contig133.2695.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig133.2695.1 vs. uniprot
Match: D8LC09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC09_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 1.830e-34
Identity = 90/146 (61.64%), Postives = 101/146 (69.18%), Query Frame = 1 
Query:  649 PTT--GSRGGSEFET----ASXXXXXXXXXXXXXXXXXXXFELETASXXXXXXXXXXXXXXXXXSG--FSECTPGDAESCYDQLAPFMRGRLEGLKRGLTCEESCIVRGGLWCNALGLNGCRFCATSCDNFCSGQGLPDDCDCFEC 1062
            PTT  GSRGG  FET    AS   XXXXXXXXXXXXX    E+ TAS                 SG  F+ECTPGD+++CYDQL P M+G L    RGLTCEESC+V GGLWC+ALGL+GCRFCATSCDNFC+ QGLPDDC+C EC
Sbjct:  527 PTTSDGSRGGLNFETQSPTASNDMXXXXXXXXXXXXXSTSREIATASPTSSTSRGIPIMSASPASGVTFTECTPGDSDTCYDQLEPSMKGLLVERSRGLTCEESCLVGGGLWCDALGLSGCRFCATSCDNFCTEQGLPDDCECIEC 672
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BLAST of mRNA_H-canaliculatus_F_contig133.2695.1 vs. uniprot
Match: A0A6H5JD92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD92_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 1.710e-33
Identity = 88/146 (60.27%), Postives = 100/146 (68.49%), Query Frame = 1 
Query:  649 PTT--GSRGGSEFET----ASXXXXXXXXXXXXXXXXXXXFELETASXXXXXXXXXXXXXXXXXSG--FSECTPGDAESCYDQLAPFMRGRLEGLKRGLTCEESCIVRGGLWCNALGLNGCRFCATSCDNFCSGQGLPDDCDCFEC 1062
            PTT  GSRGG  FET    AS   XXXXXXXXXXXXX    E+ T S                 SG  F+ECTPGD+++CYDQL P M+G L    RGLTCEESC++ GGLWC+ALGL+GCRFCATSCDNFC+ QGLPDDC+C EC
Sbjct: 1204 PTTSDGSRGGLNFETQSPTASNDLXXXXXXXXXXXXXSASREIATTSPTSSTLRGIPIMSASPTSGVTFTECTPGDSDTCYDQLEPSMKGLLVERSRGLTCEESCLIDGGLWCDALGLSGCRFCATSCDNFCTEQGLPDDCECIEC 1349
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig133.2695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC09_ECTSI1.830e-3461.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD92_9PHAE1.710e-3360.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig133contigH-canaliculatus_F_contig133:14922..16868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_004005.1
Exons3
Model size1065
Cds size1062
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig133.2695.1prot_H-canaliculatus_F_contig133.2695.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig133 14925..16868 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929067.149531-UTR-H-canaliculatus_F_contig133:14921..149241622929067.149531-UTR-H-canaliculatus_F_contig133:14921..14924Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig133 14922..14924 +
1696845667.2119048-UTR-H-canaliculatus_F_contig133:14921..149241696845667.2119048-UTR-H-canaliculatus_F_contig133:14921..14924Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig133 14922..14924 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929067.1842673-CDS-H-canaliculatus_F_contig133:14924..156241622929067.1842673-CDS-H-canaliculatus_F_contig133:14924..15624Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig133 14925..15624 +
1696845667.2213612-CDS-H-canaliculatus_F_contig133:14924..156241696845667.2213612-CDS-H-canaliculatus_F_contig133:14924..15624Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig133 14925..15624 +
1622929067.1990917-CDS-H-canaliculatus_F_contig133:16287..165671622929067.1990917-CDS-H-canaliculatus_F_contig133:16287..16567Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig133 16288..16567 +
1696845667.2352967-CDS-H-canaliculatus_F_contig133:16287..165671696845667.2352967-CDS-H-canaliculatus_F_contig133:16287..16567Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig133 16288..16567 +
1622929067.2106712-CDS-H-canaliculatus_F_contig133:16786..168681622929067.2106712-CDS-H-canaliculatus_F_contig133:16786..16868Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig133 16787..16868 +
1696845667.2463574-CDS-H-canaliculatus_F_contig133:16786..168681696845667.2463574-CDS-H-canaliculatus_F_contig133:16786..16868Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig133 16787..16868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig133.2695.1

>prot_H-canaliculatus_F_contig133.2695.1 ID=prot_H-canaliculatus_F_contig133.2695.1|Name=mRNA_H-canaliculatus_F_contig133.2695.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=354bp
MSPTFSPSAAPSPSPSSGTDGPLAFETAMPTPLETASPTAENGSGGLPLG
SMAPTPTGYETPSPTEEDGSRGLPLGSSASTSTEYATPSPAAATFAPTGT
DGAHGLETAMPTVPEITALLSAAPSAAPSNAAAMTTQPSFSDRSELPLTT
ATPITVTIAPSGTDEPRGSQTAIPTAHETPSPTNTQDGSSSRTPGPTGYE
TPSPTTTDRGLPSAYPTTGSRGGSEFETASPSPGSTWYDTPSPTSTDRGF
ELETASPTSGSRGGIPMMSAAPTSGFSECTPGDAESCYDQLAPFMRGRLE
GLKRGLTCEESCIVRGGLWCNALGLNGCRFCATSCDNFCSGQGLPDDCDC
FEC*
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mRNA from alignment at H-canaliculatus_F_contig133:14922..16868+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig133.2695.1 ID=mRNA_H-canaliculatus_F_contig133.2695.1|Name=mRNA_H-canaliculatus_F_contig133.2695.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1947bp|location=Sequence derived from alignment at H-canaliculatus_F_contig133:14922..16868+ (Hapterophycus canaliculatus Oshoro5f female)
ACAATGTCGCCGACCTTTTCACCTTCAGCTGCCCCCTCGCCTTCCCCTTC
GTCTGGCACGGATGGGCCGCTCGCGTTCGAGACGGCGATGCCGACGCCGC
TCGAGACTGCCTCGCCCACCGCAGAGAATGGAAGCGGAGGCCTGCCTCTA
GGATCAATGGCGCCTACACCAACGGGGTACGAGACTCCCTCACCCACCGA
GGAGGACGGGAGTAGAGGCCTACCTCTAGGGTCATCGGCGTCTACGTCAA
CAGAGTACGCGACTCCCTCGCCAGCTGCTGCTACTTTCGCACCGACTGGT
ACGGACGGGGCTCACGGGCTTGAGACAGCCATGCCGACGGTACCCGAGAT
CACAGCGTTACTCAGCGCCGCCCCTTCAGCTGCCCCTTCCAACGCCGCCG
CGATGACAACCCAGCCATCCTTCAGCGACCGGAGCGAGCTACCCCTGACC
ACCGCCACCCCTATCACGGTCACGATAGCCCCGTCTGGTACGGATGAGCC
ACGCGGGTCCCAAACAGCGATACCGACGGCGCACGAGACTCCCTCACCCA
CCAACACGCAAGATGGCTCGTCATCGCGGACTCCAGGCCCAACCGGGTAC
GAGACCCCGTCACCTACTACCACGGACAGGGGTTTGCCGAGCGCGTACCC
AACCACGGGCTCACGGGGCGGTTCTGAGTTCGAGACGGCATCTCCAAGCC
CTGGTGAGAACGAGGGGTGACGAGTGTTTGGAGACATCAACCAACATCCA
CAGTAGTGCCTTGAATTGGTGTCATCTCGAGCTCTCGTGGGCCGTCCTTC
ATTACATCTGACTTTGCACAAGGACTCGGCTTGATCACATGCACAATCAA
ATTGTTCCAACCAGTCTTCTCGGGCCCGCTTCAAACATCTGGATTGCCAG
ACTCATTTTTGGGTAGAGTGAAACGCGTTGCAGGAAAGAGGCTACGGGAG
CGGCAATTACGAGGTTTCTTCCTCTCTTCCTGTGCCGGGATGTTTCCAAA
CATTTCGGACCGCGATTCAAGGGTTACTTTCTAGGGCGACGGCATCAAAC
CGTGGATGACACTACAGGATAAAGCTGTGGCTGATCACTCCTACATGGGA
CCTCCTTTTTGTTCGGAAAACGCATCGCCAGAGAACTTTACCCGGGTGCT
GTTGCTGATGTGTGCATGGAATCTTCGACCGAAACTCATCCGGCAGTAGA
CGATTGAGTTCAGAGTGTGCGCGTTGTGAACTCGCGGCCATTTTTGCGAT
GTCTTCACAACGCGACTTGACTTTAACCTTTTGGAAATTGAAATTACAAT
GCAAAGTGCATAAGCAATCACCATAAAGCTAAAAGCATGTACTTTCAACA
TCGTCTCGTACTCCAGGGTCCACCTGGTACGACACTCCCTCTCCCACCAG
CACGGACAGAGGTTTCGAGTTGGAGACGGCGTCGCCGACATCCGGGTCGC
GCGGTGGAATCCCGATGATGTCGGCGGCGCCCACGTCTGGCTTCTCGGAA
TGCACGCCGGGAGACGCCGAAAGTTGTTACGATCAGCTTGCTCCATTCAT
GAGGGGACGTCTTGAAGGTCTGAAACGCGGCCTGACGTGCGAGGAGAGCT
GCATCGTTCGCGGCGGCCTGTGGTGCAACGCTCTGGGGCTCAATGGGTGT
GTTCCGTTCAGCCACTGAACCCTTGTCACCCTGGCCCCCTCTCGTCTAAA
GTAACGCACGGATTAGGTCGATGAAAGGGGACCTACTGTCCCGCTCGACT
TGAAAACATATTCGTAACATGAACGTTCAAAATCAATCCTGGTTCACGTT
TCCGGAGTGCTCCTACAAAACATGCACGGCTGATGTTCTCGTCCTTTGCT
CTTCGATCTTTTCAGGTGCCGCTTCTGTGCGACCAGTTGCGACAACTTCT
GCTCTGGGCAGGGGCTCCCCGACGACTGCGATTGCTTCGAGTGCTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig133:14922..16868+

>mRNA_H-canaliculatus_F_contig133.2695.1 ID=mRNA_H-canaliculatus_F_contig133.2695.1|Name=mRNA_H-canaliculatus_F_contig133.2695.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2124bp|location=Sequence derived from alignment at H-canaliculatus_F_contig133:14922..16868+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGCCGACCTTTTCACCTTCAGCTGCCCCCTCGCCTTCCCCTTCGTC
TGGCACGGATGGGCCGCTCGCGTTCGAGACGGCGATGCCGACGCCGCTCG
AGACTGCCTCGCCCACCGCAGAGAATGGAAGCGGAGGCCTGCCTCTAGGA
TCAATGGCGCCTACACCAACGGGGTACGAGACTCCCTCACCCACCGAGGA
GGACGGGAGTAGAGGCCTACCTCTAGGGTCATCGGCGTCTACGTCAACAG
AGTACGCGACTCCCTCGCCAGCTGCTGCTACTTTCGCACCGACTGGTACG
GACGGGGCTCACGGGCTTGAGACAGCCATGCCGACGGTACCCGAGATCAC
AGCGTTACTCAGCGCCGCCCCTTCAGCTGCCCCTTCCAACGCCGCCGCGA
TGACAACCCAGCCATCCTTCAGCGACCGGAGCGAGCTACCCCTGACCACC
GCCACCCCTATCACGGTCACGATAGCCCCGTCTGGTACGGATGAGCCACG
CGGGTCCCAAACAGCGATACCGACGGCGCACGAGACTCCCTCACCCACCA
ACACGCAAGATGGCTCGTCATCGCGGACTCCAGGCCCAACCGGGTACGAG
ACCCCGTCACCTACTACCACGGACAGGGGTTTGCCGAGCGCGTACCCAAC
CACGGGCTCACGGGGCGGTTCTGAGTTCGAGACGGCATCTCCAAGCCCTG
ATGTCGCCGACCTTTTCACCTTCAGCTGCCCCCTCGCCTTCCCCTTCGTC
TGGCACGGATGGGCCGCTCGCGTTCGAGACGGCGATGCCGACGCCGCTCG
AGACTGCCTCGCCCACCGCAGAGAATGGAAGCGGAGGCCTGCCTCTAGGA
TCAATGGCGCCTACACCAACGGGGTACGAGACTCCCTCACCCACCGAGGA
GGACGGGAGTAGAGGCCTACCTCTAGGGTCATCGGCGTCTACGTCAACAG
AGTACGCGACTCCCTCGCCAGCTGCTGCTACTTTCGCACCGACTGGTACG
GACGGGGCTCACGGGCTTGAGACAGCCATGCCGACGGTACCCGAGATCAC
AGCGTTACTCAGCGCCGCCCCTTCAGCTGCCCCTTCCAACGCCGCCGCGA
TGACAACCCAGCCATCCTTCAGCGACCGGAGCGAGCTACCCCTGACCACC
GCCACCCCTATCACGGTCACGATAGCCCCGTCTGGTACGGATGAGCCACG
CGGGTCCCAAACAGCGATACCGACGGCGCACGAGACTCCCTCACCCACCA
ACACGCAAGATGGCTCGTCATCGCGGACTCCAGGCCCAACCGGGTACGAG
ACCCCGTCACCTACTACCACGGACAGGGGTTTGCCGAGCGCGTACCCAAC
CACGGGCTCACGGGGCGGTTCTGAGTTCGAGACGGCATCTCCAAGCCCTG
GGTCCACCTGGTACGACACTCCCTCTCCCACCAGCACGGACAGAGGTTTC
GAGTTGGAGACGGCGTCGCCGACATCCGGGTCGCGCGGTGGAATCCCGAT
GATGTCGGCGGCGCCCACGTCTGGCTTCTCGGAATGCACGCCGGGAGACG
CCGAAAGTTGTTACGATCAGCTTGCTCCATTCATGAGGGGACGTCTTGAA
GGTCTGAAACGCGGCCTGACGTGCGAGGAGAGCTGCATCGTTCGCGGCGG
CCTGTGGTGCAACGCTCTGGGGCTCAATGGGGTCCACCTGGTACGACACT
CCCTCTCCCACCAGCACGGACAGAGGTTTCGAGTTGGAGACGGCGTCGCC
GACATCCGGGTCGCGCGGTGGAATCCCGATGATGTCGGCGGCGCCCACGT
CTGGCTTCTCGGAATGCACGCCGGGAGACGCCGAAAGTTGTTACGATCAG
CTTGCTCCATTCATGAGGGGACGTCTTGAAGGTCTGAAACGCGGCCTGAC
GTGCGAGGAGAGCTGCATCGTTCGCGGCGGCCTGTGGTGCAACGCTCTGG
GGCTCAATGGGTGCCGCTTCTGTGCGACCAGTTGCGACAACTTCTGCTCT
GGGCAGGGGCTCCCCGACGACTGCGATTGCTTCGAGTGCTAAGTGCCGCT
TCTGTGCGACCAGTTGCGACAACTTCTGCTCTGGGCAGGGGCTCCCCGAC
GACTGCGATTGCTTCGAGTGCTAA
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