mRNA_H-canaliculatus_F_contig13297.2692.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig13297.2692.1 vs. uniprot
Match: D7G717_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G717_ECTSI) HSP 1 Score: 347 bits (890), Expect = 7.910e-117 Identity = 169/203 (83.25%), Postives = 189/203 (93.10%), Query Frame = 1
Query: 1 RRMTEDRLEANLAVNYLGNFLLTTQLLPLLKKSPDGRVLCVNSSLHKKAEAFRFEDPMFEKNYSMFKAYANSKLALLMFAEELQHRLNREKSTVIVNSANPGIVMTDISRDMGWFMRAGNELFKPVLNLFCKQPNAGAFTSVYATTTPKLRKSSEDGAPGVGGLYISDCAPAAFNPAVSVDKARKDLWKLSEDLVSTGAKKSR 609
R++TE+ LEANLAVNYLGNFLLTTQLLPLLK+SPDGRVLCVNSSLHKK EAFRFEDPMF+++Y+MFKAYANSKLALLMFAEELQ RLNREKSTVIVNSANPGIVMT ISRDMGWF+R G+E+FKP L LF K P AGAFTSV+A TTP+LRKS+EDGAPGVGGLY+SDCAP AFNPAV+VDK+RKDLWKLSE+ VS G+KK+R
Sbjct: 212 RKVTEEGLEANLAVNYLGNFLLTTQLLPLLKQSPDGRVLCVNSSLHKKPEAFRFEDPMFDRDYNMFKAYANSKLALLMFAEELQQRLNREKSTVIVNSANPGIVMTGISRDMGWFLRVGHEVFKPFLKLFLKHPKAGAFTSVFAATTPQLRKSTEDGAPGVGGLYMSDCAPQAFNPAVAVDKSRKDLWKLSEEWVSAGSKKNR 414
BLAST of mRNA_H-canaliculatus_F_contig13297.2692.1 vs. uniprot
Match: A0A6H5J7F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7F6_9PHAE) HSP 1 Score: 185 bits (470), Expect = 1.940e-53 Identity = 113/243 (46.50%), Postives = 136/243 (55.97%), Query Frame = 1
Query: 1 RRMTEDRLEANLAVNYLGNFLLTTQLLPLLKKSPDGRVLCVNSSLHKKAE--------------AFRFEDPMFEKNYSMFKAYANSKLALLMFAEELQHRLNREK-----------STVIVNSANP---------------------------------------GIVMTDISRDMGWFMRAGNELFKPVLNLFCKQPNAGAFTSVYATTTPKLRKSSEDGAPGVGGLYISDCAPAAFNPAVS 537
R++TE+ LEANLAVNYLGNFLLTTQLLPLLK+SPDGRVLCVNSSLHKK A + + E +M K + AE ++H + T+I+N + GIVMT+ISRDMGWF+R G+E+FKP L LF K P AGAFTSV+A TTP+LRK +EDGAPGVGGLY+SDCAP AFNPAV+
Sbjct: 184 RKVTEEGLEANLAVNYLGNFLLTTQLLPLLKQSPDGRVLCVNSSLHKKVVILGDTCDAASIVPLAMGADVVVHEATNTMLPPLDQGKTYADVEAEAIKHGHSTPMMAAAFAQRVGAKTLILNHFSARYRGDPSDASVAAMLRIERQAARAGGLERHQGWDFLETCGIVMTNISRDMGWFLRVGHEVFKPFLKLFLKHPKAGAFTSVFAATTPQLRKGTEDGAPGVGGLYMSDCAPQAFNPAVT 426
BLAST of mRNA_H-canaliculatus_F_contig13297.2692.1 vs. uniprot
Match: A0A835YQM3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQM3_9STRA) HSP 1 Score: 167 bits (423), Expect = 1.530e-46 Identity = 92/200 (46.00%), Postives = 128/200 (64.00%), Query Frame = 1
Query: 1 RRMTEDRLEANLAVNYLGNFLLTTQLLPLLKKSPDGRVLCVNSSLHKKAEAFRFEDPMFEKNYSMFKAYANSKLALLMFAEELQHRLNREKSTVIVNSANPGIVMTDISRDMGWFMRAGNELFKPVLNLFCKQPNAGAFTSVYATTTPKLRKSSEDGAPGVGGLYISDCAPAAFNPAVSVDKARKDLWKLSEDLVSTGAK 600
R +TED E AVN+L +FLL +LLPL+++S +GR++ + S+LHK +AF F+D E+ YSMFKAY+ SKLA +MF EL RL + S V+VN +PG+V++DIS++M +MR EL +P+L L K P GA+TSVY T+P LR+ +DG+ + G Y D P A + R+ LW LSE L GAK
Sbjct: 221 RTVTEDGFETTFAVNHLAHFLLARELLPLVERSAEGRIVILTSALHKSVKAFDFDDVQTEQRYSMFKAYSKSKLANVMFGIELHKRLQEQGSKVMVNMVHPGMVLSDISKNMRMYMRVLEELVRPILVLLRKLPVHGAYTSVYVATSPDLRR--DDGS-AISGQYFFDSYPQMVAEAARYNDDRERLWTLSEQLC--GAK 415
BLAST of mRNA_H-canaliculatus_F_contig13297.2692.1 vs. uniprot
Match: W7U8G8_9STRA (Short-chain dehydrogenase n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U8G8_9STRA) HSP 1 Score: 142 bits (358), Expect = 2.140e-36 Identity = 86/222 (38.74%), Postives = 121/222 (54.50%), Query Frame = 1
Query: 1 RRMTEDRLEANLAVNYLGNFLLTTQLLPLLKKSPDGRVLCVNSSLHKKAEAFRFEDPMFEKN-YSMFKAYANSKLALLMFAEELQHRLNREKST---------------------VIVNSANPGIVMTDISRDMGWFMRAGNELFKPVLNLFCKQPNAGAFTSVYATTTPKLRKSSEDGAPGVGGLYISDCAPAAFNPAVSVDKARKD-LWKLSEDLVSTGA 597
RR+T + LEA LA N+ G+FLLT L P L+K DGRV+ V+SSLHK AF F+DP++E + YS+F AY SKLA ++F ELQ RL +S V N+ +PG V T+++R+M W++ G + P+L F K P GA+TSV+ T+P LR G+GG + +C AV+ D + LW +SE+ A
Sbjct: 219 RRLTSEGLEATLATNHFGHFLLTLLLFPELEKVSDGRVVNVSSSLHKVPRAFNFDDPLYESSAYSLFGAYGQSKLANVLFTFELQRRLEVLQSNEANKVGRKGERGGGDLAVRRVVTANAVHPGNVQTEVARNMPWYLYWGQRICSPILWCFSKNPAQGAYTSVHVATSPALR--------GIGGKFFVNCDVTGDVSAVARDPSVAGRLWAMSEEACGLTA 432
BLAST of mRNA_H-canaliculatus_F_contig13297.2692.1 vs. uniprot
Match: A0A8B7KZ54_DROEL (retinol dehydrogenase 14-like n=1 Tax=Drosophila elegans TaxID=30023 RepID=A0A8B7KZ54_DROEL) HSP 1 Score: 127 bits (318), Expect = 6.450e-33 Identity = 79/196 (40.31%), Postives = 108/196 (55.10%), Query Frame = 1
Query: 1 RRMTEDRLEANLAVNYLGNFLLTTQLLPLLKKSPDGRVLCVNSSLHKKAEAFRFEDPMFEKNYSMFKAYANSKLALLMFAEELQHRLNREKSTVIVNSANPGIVMTDISRDMGWFM-RAGNELFKPVLNLFCKQPNAGAFTSVYATTTPKLRKSSEDGAPGVGGLYISDCAPAAFNPAVSVDKARKDLWKLSEDLV 585
+ +T+D E L VN++G+FLLT LL +LKKS R++ ++S H + A D EK+Y +AY+ SKLA ++F EL RL E S V VN+ +PG+V T++ R+M +F L KP+ K P +GA TS+YA P+L+K V GLY SDC P PA D K LW SE L
Sbjct: 24 KMLTKDGFEMQLGVNHIGHFLLTNLLLDVLKKSAPSRIVVLSSLAHTQG-AINLADLNSEKSYDEGRAYSQSKLANVLFTRELAKRL--EGSGVTVNALHPGLVDTELGRNMAFFQTNLAKYLIKPLFWPLLKTPKSGAQTSIYAALDPELKK--------VSGLYFSDCKPKDAAPAALDDAVGKLLWTESEKLT 208
BLAST of mRNA_H-canaliculatus_F_contig13297.2692.1 vs. uniprot
Match: UPI001CFBE409 (retinol dehydrogenase 12-like isoform X1 n=2 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFBE409) HSP 1 Score: 122 bits (306), Expect = 2.250e-30 Identity = 76/192 (39.58%), Postives = 108/192 (56.25%), Query Frame = 1
Query: 10 TEDRLEANLAVNYLGNFLLTTQLLPLLKKSPDGRVLCVNSSLHKKAEAFRFEDPMFEKNYSMFKAYANSKLALLMFAEELQHRLNREKSTVIVNSANPGIVMTDISRDMGWFMRAGNELFKPVLNLFCKQPNAGAFTSVYATTTPKLRKSSEDGAPGVGGLYISDCAPAAFNPAVSVDKARKDLWKLSEDLV 585
T D E VN+LG+ LLT LL L+K+S R++ V+S H +F+D EKNYS KAYA SKLA ++F +EL RL E S V V + +PG+V T++SR + ++ G +L +P F K P GA T++Y + P+L K + GLY SDCA + + A S + K LW +S L+
Sbjct: 117 TADGFEMQFGVNHLGHVLLTHLLLDLIKRSTPARIVNVSSKAHTMG-TIQFDDLNSEKNYSPLKAYAQSKLANILFTKELAKRL--EGSGVTVYALHPGVVRTELSRHLSSTLQIGMKLLQP----FTKSPVEGAQTTIYCSVAPELEKET--------GLYYSDCAATSCSRAASDEDVAKRLWGVSCQLL 293
BLAST of mRNA_H-canaliculatus_F_contig13297.2692.1 vs. uniprot
Match: UPI001C0816B2 (retinol dehydrogenase 11-like n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C0816B2) HSP 1 Score: 122 bits (306), Expect = 4.120e-30 Identity = 76/192 (39.58%), Postives = 104/192 (54.17%), Query Frame = 1
Query: 10 TEDRLEANLAVNYLGNFLLTTQLLPLLKKSPDGRVLCVNSSLHKKAEAFRFEDPMFEKNYSMFKAYANSKLALLMFAEELQHRLNREKSTVIVNSANPGIVMTDISRDMGWFMRAGNELFKPVLNLFCKQPNAGAFTSVYATTTPKLRKSSEDGAPGVGGLYISDCAPAAFNPAVSVDKARKDLWKLSEDLV 585
TED E VN+LG+FLLT LL LLKKS RV+ V+S H+K + F+D +K+Y+ K+Y SKLA ++F++EL RL E + V V S +PG++ T++ R + + LF L LF K P GA TS+Y L+ +S GLY SDCAP P A LW +S +V
Sbjct: 145 TEDGFEMQFGVNHLGHFLLTNSLLDLLKKSAPSRVVNVSSLAHEKGK-IHFDDINLDKDYNPMKSYRQSKLANVLFSQELAKRL--EGTGVTVYSLHPGVIRTELGRHLWPTIALWKRLFFQPLILFIKSPWEGAQTSIYCAVDESLQNTS--------GLYYSDCAPKQAAPQACDAAAATKLWDISASMV 325
BLAST of mRNA_H-canaliculatus_F_contig13297.2692.1 vs. uniprot
Match: UPI001F036D3E (retinol dehydrogenase 14-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F036D3E) HSP 1 Score: 122 bits (305), Expect = 4.300e-30 Identity = 80/196 (40.82%), Postives = 105/196 (53.57%), Query Frame = 1
Query: 10 TEDRLEANLAVNYLGNFLLTTQLLPLLKKSPDGRVLCVNSSLHKKAEAFRFEDPMFEKNYSMFKAYANSKLALLMFAEELQHRLNREKSTVIVNSANPGIVMTDISRDMGWFMRAGNELFK----PVLNLFCKQPNAGAFTSVYATTTPKLRKSSEDGAPGVGGLYISDCAPAAFNPAVSVDKARKDLWKLSEDLV 585
+ED E AVN+LG+FLLT L+ L KS R++ V+SSLHK + FED +KNY+ +AYA SKLA L+FA H L R V VN+ +PGIV T+++R ++ LFK P+L L K P GA TS+Y T P L GV G+Y DC P D K LW++SE +
Sbjct: 131 SEDGFELQFAVNHLGHFLLTNLLMDTLAKSKPSRIIIVSSSLHKYG-SIDFEDLNGDKNYNPRRAYAQSKLANLLFA----HELKRLPQGVTVNTVHPGIVFTELARYTTFYT-----LFKYLAYPLLLLILKTPWQGAQTSIYCATEPTLE--------GVSGMYFGDCKKNDCAPHARDDGKAKKLWEISEKMT 308
BLAST of mRNA_H-canaliculatus_F_contig13297.2692.1 vs. uniprot
Match: B3MHR9_DROAN (Uncharacterized protein n=3 Tax=ananassae subgroup TaxID=32347 RepID=B3MHR9_DROAN) HSP 1 Score: 121 bits (303), Expect = 1.200e-29 Identity = 79/193 (40.93%), Postives = 108/193 (55.96%), Query Frame = 1
Query: 1 RRMTEDRLEANLAVNYLGNFLLTTQLLPLLKKSPDGRVLCVNSSLHKKAEAFRFEDPMFEKNYSMFKAYANSKLALLMFAEELQHRLNREKSTVIVNSANPGIVMTDISRDMGWFMRAGNELF-KPVLNLFCKQPNAGAFTSVYATTTPKLRKSSEDGAPGVGGLYISDCAPAAFNPAVSVDKARKDLWKLSE 576
R +T D +E L VN++G+FLLTTQLL +LKKS R++ V+S H + E D +K+Y KAY+ SKLA ++F EL RL E + V VN+ +PG+V T+I R MG+F LF KP+ F K P GA T++Y P+L+K V G Y SDC PA + K LW +S+
Sbjct: 139 RSLTTDGIELQLGVNHMGHFLLTTQLLDMLKKSAPSRIVNVSSLAHTRGE-INTGDLNSDKSYDEGKAYSQSKLANVLFTRELARRL--EGTGVTVNALHPGVVDTEIIRHMGFFNNFFAGLFVKPLFWPFVKTPKNGAQTTLYVALDPELKK--------VTGQYFSDCKIKEVAPAALDVQTAKWLWAVSD 320
BLAST of mRNA_H-canaliculatus_F_contig13297.2692.1 vs. uniprot
Match: A0A6P4IFK9_DROKI (retinol dehydrogenase 12-like n=1 Tax=Drosophila kikkawai TaxID=30033 RepID=A0A6P4IFK9_DROKI) HSP 1 Score: 120 bits (300), Expect = 1.550e-29 Identity = 77/199 (38.69%), Postives = 109/199 (54.77%), Query Frame = 1
Query: 1 RRMTEDRLEANLAVNYLGNFLLTTQLLPLLKKSPDGRVLCVNSSLHKKAEAFRFEDPMFEKNYSMFKAYANSKLALLMFAEELQHRLNREKSTVIVNSANPGIVMTDISRDMGWFMRAGNELFKPVLNLFCKQPNAGAFTSVYATTTPKLRKSSEDGAPGVGGLYISDCAPAAFNPAVSVDKARKDLWKLSEDLVSTGA 597
R +T+D +E VN++G+FLLT LL +LKK+ R++ V+S+LH K + D +K+YS AY SKLA ++F EL RL E + V VNS +PG+V T+I R++ F +A + P+ F K +GA TS+YA P L+ +S GLY SDC + A DK K +W SE GA
Sbjct: 108 RSLTKDGIELQFGVNHVGHFLLTHLLLDVLKKTAPSRIVVVSSALHAKG-SINVNDLNSKKSYSKTGAYHQSKLANILFTRELAKRL--EGTGVTVNSLHPGVVDTEIWRNLNGFTKA---MTSPLRWAFFKTAKSGAQTSLYAALDPDLKNAS--------GLYFSDCKAKKVSKAAKDDKMAKFVWAESEKWTGVGA 292 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13297.2692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig13297.2692.1 >prot_H-canaliculatus_F_contig13297.2692.1 ID=prot_H-canaliculatus_F_contig13297.2692.1|Name=mRNA_H-canaliculatus_F_contig13297.2692.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=202bp MTEDRLEANLAVNYLGNFLLTTQLLPLLKKSPDGRVLCVNSSLHKKAEAFback to top mRNA from alignment at H-canaliculatus_F_contig13297:268..2886+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig13297.2692.1 ID=mRNA_H-canaliculatus_F_contig13297.2692.1|Name=mRNA_H-canaliculatus_F_contig13297.2692.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2619bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13297:268..2886+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13297:268..2886+ >mRNA_H-canaliculatus_F_contig13297.2692.1 ID=mRNA_H-canaliculatus_F_contig13297.2692.1|Name=mRNA_H-canaliculatus_F_contig13297.2692.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1212bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13297:268..2886+ (Hapterophycus canaliculatus Oshoro5f female)back to top |