mRNA_H-canaliculatus_F_contig13296.2691.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13296.2691.1
Unique NamemRNA_H-canaliculatus_F_contig13296.2691.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13296.2691.1 vs. uniprot
Match: D7FT38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT38_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 4.520e-16
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:    1 SSLQILLHKNLMRLRQFMAAPDKPIPDAPKDWMPPMPRPDSPSTGDSESXXXXXSGDDRTTQGKPAARKG 210
            +SLQI+LHKNLMRLRQFMAAPD+PIP+APKDWMPPMP PD+P  G+S+S     +GD++  QG+ A RKG
Sbjct:   32 TSLQIVLHKNLMRLRQFMAAPDEPIPNAPKDWMPPMPTPDTPPAGESDSESDS-TGDEQGVQGERATRKG 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13296.2691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT38_ECTSI4.520e-1667.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13296contigH-canaliculatus_F_contig13296:970..3210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_002710.1
Exons3
Model size1668
Cds size1668
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13296.2691.1prot_H-canaliculatus_F_contig13296.2691.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13296 970..3210 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929066.7747843-CDS-H-canaliculatus_F_contig13296:969..11431622929066.7747843-CDS-H-canaliculatus_F_contig13296:969..1143Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13296 970..1143 +
1696845667.0903063-CDS-H-canaliculatus_F_contig13296:969..11431696845667.0903063-CDS-H-canaliculatus_F_contig13296:969..1143Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13296 970..1143 +
1622929066.8116894-CDS-H-canaliculatus_F_contig13296:1659..23991622929066.8116894-CDS-H-canaliculatus_F_contig13296:1659..2399Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13296 1660..2399 +
1696845667.1002316-CDS-H-canaliculatus_F_contig13296:1659..23991696845667.1002316-CDS-H-canaliculatus_F_contig13296:1659..2399Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13296 1660..2399 +
1622929066.8237195-CDS-H-canaliculatus_F_contig13296:2456..32101622929066.8237195-CDS-H-canaliculatus_F_contig13296:2456..3210Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13296 2457..3210 +
1696845667.1093264-CDS-H-canaliculatus_F_contig13296:2456..32101696845667.1093264-CDS-H-canaliculatus_F_contig13296:2456..3210Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13296 2457..3210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13296.2691.1

>prot_H-canaliculatus_F_contig13296.2691.1 ID=prot_H-canaliculatus_F_contig13296.2691.1|Name=mRNA_H-canaliculatus_F_contig13296.2691.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=556bp
SSLQILLHKNLMRLRQFMAAPDKPIPDAPKDWMPPMPRPDSPSTGDSESD
KDDDSGDDRTTQGKPAARKGKGKGKGKQHQRQQQRQQTEGGSAPSPARAA
AGAATLGTAGTLPGFNGDEDVGGQSEGVGAGGPWPGPRPVGDLSLSSSSP
PPPSSTRRRYKPRKKKAHAGSGGGGGGLGTLLYPDMFSRDKTASHIPSSF
PYVPTPWRSPPGSSGGGFGDGGGGGAAAAPPAASSSSPAPRSDPPPPSSS
SASSSSPAPPPSYAWSSSPLPPPLPVPQAAATAAAAAAAPAAAAATSGRP
QPAHPPGRPSKTSPKVAPAPPRTLLPSGTFHGFRGGVPPTLLAPAPPMMM
GGGVGGAAAAAAAAAAAAAGGVGGGGAGFFAPPFYPSPYGVPPFPSFMPP
RHFGVHPRFPGAPPHFGVAAPFGVAVPYAAGGGASPFGGLPFGFVPPAAR
PAPVHPRRAPRPTKLDEATAAEIQKLRTATLLANSRRNKSAEHEDLVVDV
EGGSDDGPVNDKDDGRGGGTAGGGGGGRGGRGGGGGGGGGGGGGGGGGAP
PAAPAT
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mRNA from alignment at H-canaliculatus_F_contig13296:970..3210+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13296.2691.1 ID=mRNA_H-canaliculatus_F_contig13296.2691.1|Name=mRNA_H-canaliculatus_F_contig13296.2691.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2241bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13296:970..3210+ (Hapterophycus canaliculatus Oshoro5f female)
TCTAGCCTCCAGATACTGCTCCACAAGAACCTCATGCGGCTTCGCCAATT
TATGGCTGCGCCCGACAAGCCGATACCGGACGCCCCCAAGGATTGGATGC
CCCCCATGCCCAGGCCCGACAGCCCTTCAACAGGAGACAGCGAGAGCGAT
AAGGACGATGACTCGGGCGATGATGTAAGCCTTGGCGTAGAGGAAGAGGG
CCAAATGCCGCTTGCGATGTGGCTGCGGCTTTGGCGTCTGGTCTTCGAGG
TGCAAATTTGCGCTATTTCTGTTTGAACCGACTTGTGGAGATCTACTCCA
TATGGCTTCTGGAGTCGTGTGCCGATTCTCTCCTCCCCGGCGTTCGGCGC
TTCCCTGGATTGCTTGCAGACATCCTCTGTTGAGCCAGGTCTTCGTCGCC
AGGCCTGTGTCGCCAGAGCTTGGAAACGCCGCGAGTGCGCGCAGTCGTTC
GCTGGCCTGTGCCGACCAACGCGGGCGGATTACCGAAGCACCGGTGTGAG
AAACGAACATCTCTGGCGCGCGCAACCCTCTCGTTCCCGCGCCTTTCGTG
CGGAATCTCGGCGATAGCGGCAGCGTTCCCCGGCTAACCCGCACGCCCCC
TTGCCTTTTTAGTCTTTCCTGTGCTGCTTGTCGCACGTGTTACACTTTTC
CTCCGCGCGGCCCCCACCCTCGTCGAAAAACACGCCACAGCGAACGACAC
AAGGGAAACCCGCAGCTCGAAAAGGGAAAGGGAAAGGGAAAGGGAAGCAG
CATCAGCGGCAGCAGCAGCGACAACAGACCGAGGGGGGCTCGGCACCCTC
TCCCGCCAGAGCGGCGGCGGGAGCGGCAACCCTCGGGACGGCGGGCACGC
TGCCCGGCTTCAACGGTGACGAGGATGTCGGGGGTCAAAGCGAAGGAGTT
GGGGCGGGAGGGCCGTGGCCAGGACCGCGGCCGGTGGGAGACTTGTCGCT
GTCGTCGTCTTCGCCGCCCCCGCCTTCTTCCACGAGACGAAGGTACAAAC
CACGGAAAAAGAAGGCTCATGCTGGGAGCGGCGGTGGCGGCGGCGGGCTG
GGGACGCTTCTGTACCCGGACATGTTCAGCCGCGACAAGACCGCATCGCA
CATCCCGAGCAGTTTTCCGTACGTCCCGACGCCGTGGAGGAGTCCCCCCG
GCAGCAGCGGCGGTGGTTTCGGAGACGGGGGCGGCGGCGGCGCCGCGGCC
GCACCCCCCGCTGCTTCGTCTTCCTCTCCGGCGCCCCGCTCCGATCCTCC
TCCCCCGTCCTCCTCCTCCGCCTCCTCTTCTTCTCCGGCGCCGCCACCGT
CGTACGCCTGGTCTTCTTCCCCTCTCCCTCCGCCCCTTCCTGTTCCTCAG
GCCGCCGCCACCGCCGCCGCCGCCGCCGCCGCCCCCGCCGCTGCCGCCGC
TACTTCGGGACGACCGCAGCCCGCACACCCGTCAAGCGCACCGGCCCCGG
CGCCGCCCCCGAAGAAGCCTTTCGGACCCGCGAGAAGGCCGGGGCGGCCG
TCCAAGACGTCGCCAAAAGTGGCGCCCGCACCCCCCCGGACGCTCCTGCC
TTCTGGAACTTTTCACGGCTTCCGCGGCGGGGTCCCTCCGACGTTGCTAG
CGCCGGCGCCGCCAATGATGATGGGTGGCGGGGTCGGCGGCGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCCGCTGCTGGCGGGGTCGGTGGCGGCGG
TGCTGGTTTCTTCGCCCCTCCTTTTTACCCTTCCCCGTACGGTGTCCCCC
CCTTCCCATCCTTCATGCCCCCGCGACATTTCGGGGTCCATCCTCGATTT
CCCGGGGCCCCTCCTCACTTCGGTGTCGCGGCACCGTTCGGCGTCGCGGT
CCCGTACGCCGCCGGCGGCGGCGCCTCCCCCTTCGGCGGCCTCCCGTTCG
GCTTCGTGCCTCCCGCCGCCCGCCCCGCCCCCGTTCACCCACGGCGGGCG
CCAAGACCGACGAAGCTCGACGAGGCCACGGCGGCGGAGATCCAGAAGCT
GCGGACGGCCACGCTCCTCGCCAATAGCCGCAGGAATAAGTCCGCGGAGC
ACGAGGACTTGGTGGTCGACGTGGAGGGGGGCAGCGATGATGGTCCTGTC
AACGATAAGGACGACGGCAGAGGGGGTGGGACCGCGGGAGGGGGGGGGGG
GGGGCGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGCGCCACCGGCGGCACCTGCAACG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13296:970..3210+

>mRNA_H-canaliculatus_F_contig13296.2691.1 ID=mRNA_H-canaliculatus_F_contig13296.2691.1|Name=mRNA_H-canaliculatus_F_contig13296.2691.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3336bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13296:970..3210+ (Hapterophycus canaliculatus Oshoro5f female)
TCTAGCCTCCAGATACTGCTCCACAAGAACCTCATGCGGCTTCGCCAATT
TATGGCTGCGCCCGACAAGCCGATACCGGACGCCCCCAAGGATTGGATGC
CCCCCATGCCCAGGCCCGACAGCCCTTCAACAGGAGACAGCGAGAGCGAT
AAGGACGATGACTCGGGCGATGATTCTAGCCTCCAGATACTGCTCCACAA
GAACCTCATGCGGCTTCGCCAATTTATGGCTGCGCCCGACAAGCCGATAC
CGGACGCCCCCAAGGATTGGATGCCCCCCATGCCCAGGCCCGACAGCCCT
TCAACAGGAGACAGCGAGAGCGATAAGGACGATGACTCGGGCGATGATCG
AACGACACAAGGGAAACCCGCAGCTCGAAAAGGGAAAGGGAAAGGGAAAG
GGAAGCAGCATCAGCGGCAGCAGCAGCGACAACAGACCGAGGGGGGCTCG
GCACCCTCTCCCGCCAGAGCGGCGGCGGGAGCGGCAACCCTCGGGACGGC
GGGCACGCTGCCCGGCTTCAACGGTGACGAGGATGTCGGGGGTCAAAGCG
AAGGAGTTGGGGCGGGAGGGCCGTGGCCAGGACCGCGGCCGGTGGGAGAC
TTGTCGCTGTCGTCGTCTTCGCCGCCCCCGCCTTCTTCCACGAGACGAAG
GTACAAACCACGGAAAAAGAAGGCTCATGCTGGGAGCGGCGGTGGCGGCG
GCGGGCTGGGGACGCTTCTGTACCCGGACATGTTCAGCCGCGACAAGACC
GCATCGCACATCCCGAGCAGTTTTCCGTACGTCCCGACGCCGTGGAGGAG
TCCCCCCGGCAGCAGCGGCGGTGGTTTCGGAGACGGGGGCGGCGGCGGCG
CCGCGGCCGCACCCCCCGCTGCTTCGTCTTCCTCTCCGGCGCCCCGCTCC
GATCCTCCTCCCCCGTCCTCCTCCTCCGCCTCCTCTTCTTCTCCGGCGCC
GCCACCGTCGTACGCCTGGTCTTCTTCCCCTCTCCCTCCGCCCCTTCCTG
TTCCTCAGGCCGCCGCCACCGCCGCCGCCGCCGCCGCCGCCCCCGCCGCT
GCCGCCGCTACTTCGGGACGACCGCAGCCCGCACACCCCGAACGACACAA
GGGAAACCCGCAGCTCGAAAAGGGAAAGGGAAAGGGAAAGGGAAGCAGCA
TCAGCGGCAGCAGCAGCGACAACAGACCGAGGGGGGCTCGGCACCCTCTC
CCGCCAGAGCGGCGGCGGGAGCGGCAACCCTCGGGACGGCGGGCACGCTG
CCCGGCTTCAACGGTGACGAGGATGTCGGGGGTCAAAGCGAAGGAGTTGG
GGCGGGAGGGCCGTGGCCAGGACCGCGGCCGGTGGGAGACTTGTCGCTGT
CGTCGTCTTCGCCGCCCCCGCCTTCTTCCACGAGACGAAGGTACAAACCA
CGGAAAAAGAAGGCTCATGCTGGGAGCGGCGGTGGCGGCGGCGGGCTGGG
GACGCTTCTGTACCCGGACATGTTCAGCCGCGACAAGACCGCATCGCACA
TCCCGAGCAGTTTTCCGTACGTCCCGACGCCGTGGAGGAGTCCCCCCGGC
AGCAGCGGCGGTGGTTTCGGAGACGGGGGCGGCGGCGGCGCCGCGGCCGC
ACCCCCCGCTGCTTCGTCTTCCTCTCCGGCGCCCCGCTCCGATCCTCCTC
CCCCGTCCTCCTCCTCCGCCTCCTCTTCTTCTCCGGCGCCGCCACCGTCG
TACGCCTGGTCTTCTTCCCCTCTCCCTCCGCCCCTTCCTGTTCCTCAGGC
CGCCGCCACCGCCGCCGCCGCCGCCGCCGCCCCCGCCGCTGCCGCCGCTA
CTTCGGGACGACCGCAGCCCGCACACCCGCCGGGGCGGCCGTCCAAGACG
TCGCCAAAAGTGGCGCCCGCACCCCCCCGGACGCTCCTGCCTTCTGGAAC
TTTTCACGGCTTCCGCGGCGGGGTCCCTCCGACGTTGCTAGCGCCGGCGC
CGCCAATGATGATGGGTGGCGGGGTCGGCGGCGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCCGCTGCTGGCGGGGTCGGTGGCGGCGGTGCTGGTTT
CTTCGCCCCTCCTTTTTACCCTTCCCCGTACGGTGTCCCCCCCTTCCCAT
CCTTCATGCCCCCGCGACATTTCGGGGTCCATCCTCGATTTCCCGGGGCC
CCTCCTCACTTCGGTGTCGCGGCACCGTTCGGCGTCGCGGTCCCGTACGC
CGCCGGCGGCGGCGCCTCCCCCTTCGGCGGCCTCCCGTTCGGCTTCGTGC
CTCCCGCCGCCCGCCCCGCCCCCGTTCACCCACGGCGGGCGCCAAGACCG
ACGAAGCTCGACGAGGCCACGGCGGCGGAGATCCAGAAGCTGCGGACGGC
CACGCTCCTCGCCAATAGCCGCAGGAATAAGTCCGCGGAGCACGAGGACT
TGGTGGTCGACGTGGAGGGGGGCAGCGATGATGGTCCTGTCAACGATAAG
GACGACGGCAGAGGGGGTGGGACCGCGGGAGGGGGGGGGGGGGGGCGGGG
GGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGCGCCACCGGCGGCACCTGCAACGGCCGGGGCGGCCGTCCAA
GACGTCGCCAAAAGTGGCGCCCGCACCCCCCCGGACGCTCCTGCCTTCTG
GAACTTTTCACGGCTTCCGCGGCGGGGTCCCTCCGACGTTGCTAGCGCCG
GCGCCGCCAATGATGATGGGTGGCGGGGTCGGCGGCGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCCGCTGCTGGCGGGGTCGGTGGCGGCGGTGCTG
GTTTCTTCGCCCCTCCTTTTTACCCTTCCCCGTACGGTGTCCCCCCCTTC
CCATCCTTCATGCCCCCGCGACATTTCGGGGTCCATCCTCGATTTCCCGG
GGCCCCTCCTCACTTCGGTGTCGCGGCACCGTTCGGCGTCGCGGTCCCGT
ACGCCGCCGGCGGCGGCGCCTCCCCCTTCGGCGGCCTCCCGTTCGGCTTC
GTGCCTCCCGCCGCCCGCCCCGCCCCCGTTCACCCACGGCGGGCGCCAAG
ACCGACGAAGCTCGACGAGGCCACGGCGGCGGAGATCCAGAAGCTGCGGA
CGGCCACGCTCCTCGCCAATAGCCGCAGGAATAAGTCCGCGGAGCACGAG
GACTTGGTGGTCGACGTGGAGGGGGGCAGCGATGATGGTCCTGTCAACGA
TAAGGACGACGGCAGAGGGGGTGGGACCGCGGGAGGGGGGGGGGGGGGGC
GGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGCGCCACCGGCGGCACCTGCAACG
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