mRNA_H-canaliculatus_F_contig13286.2685.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13286.2685.1
Unique NamemRNA_H-canaliculatus_F_contig13286.2685.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13286.2685.1 vs. uniprot
Match: A0A6H5L9P4_9PHAE (MI domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9P4_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.720e-15
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    7 MTLEKFNKLSATFMEVGLRDPEVVTGVIDMIVDKAQMEPHFSRCASSL 150
            MTLEKF+KLS TFM+VGLRDPEVV+GVID+IV+KAQMEPHFS   + L
Sbjct:  286 MTLEKFDKLSVTFMDVGLRDPEVVSGVIDIIVEKAQMEPHFSSMYADL 333
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BLAST of mRNA_H-canaliculatus_F_contig13286.2685.1 vs. uniprot
Match: D8LKQ5_ECTSI (Eukaryotic initiation factor 4G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ5_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.210e-15
Identity = 36/50 (72.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 SQMTLEKFNKLSATFMEVGLRDPEVVTGVIDMIVDKAQMEPHFSRCASSL 150
            ++MTLEKF+KLS TFM+VGLRDP+VV+GVID+IV+KAQMEPHFS   + L
Sbjct:  314 NKMTLEKFDKLSVTFMDVGLRDPKVVSGVIDIIVEKAQMEPHFSSMYADL 363
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BLAST of mRNA_H-canaliculatus_F_contig13286.2685.1 vs. uniprot
Match: A0A7S2BR93_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BR93_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.670e-8
Identity = 25/50 (50.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 SQMTLEKFNKLSATFMEVGLRDPEVVTGVIDMIVDKAQMEPHFSRCASSL 150
            +++T+EKF++LS  FM +G +  E++TG+ID+IVDKAQME HF    + L
Sbjct:  375 NKLTVEKFDRLSDEFMNLGFKTEELLTGIIDIIVDKAQMEQHFGAMYADL 424
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BLAST of mRNA_H-canaliculatus_F_contig13286.2685.1 vs. uniprot
Match: A0A836CBQ1_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBQ1_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.920e-6
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 SQMTLEKFNKLSATFMEVGLRDPEVVTGVIDMIVDKAQMEPHFS 132
            ++MTLEKF+KLSA F +VG    E+V  +I  +V+KAQME HF+
Sbjct:   70 NKMTLEKFDKLSAQFTDVGFTTVELVDRIISSLVEKAQMEAHFA 113
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BLAST of mRNA_H-canaliculatus_F_contig13286.2685.1 vs. uniprot
Match: H3GUW0_PHYRM (MI domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GUW0_PHYRM)

HSP 1 Score: 51.6 bits (122), Expect = 2.930e-6
Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 SQMTLEKFNKLSATFMEVGLRDPEVVTGVIDMIVDKAQMEPHFSRCASSL 150
            +++++EKF+KLS   +EV +R  EV+ GVI+M++ KAQME HFS   + L
Sbjct:  383 NKLSIEKFDKLSDQLIEVAVRGLEVLKGVIEMVISKAQMEWHFSTMYAEL 432
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BLAST of mRNA_H-canaliculatus_F_contig13286.2685.1 vs. uniprot
Match: A0A6A3KK52_9STRA (MIF4G domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3KK52_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.480e-6
Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 SQMTLEKFNKLSATFMEVGLRDPEVVTGVIDMIVDKAQMEPHFSRCASSL 150
            +++++EKF+KLS   +EV +R  EV+ GVI+M++ KAQME HFS   + L
Sbjct:  370 NKLSIEKFDKLSDQLIEVAVRGLEVLKGVIEMVIAKAQMEWHFSTMYAEL 419
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BLAST of mRNA_H-canaliculatus_F_contig13286.2685.1 vs. uniprot
Match: W2Q3D8_PHYPN (MI domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2Q3D8_PHYPN)

HSP 1 Score: 50.8 bits (120), Expect = 5.480e-6
Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 SQMTLEKFNKLSATFMEVGLRDPEVVTGVIDMIVDKAQMEPHFSRCASSL 150
            +++++EKF+KLS   +EV +R  EV+ GVI+M++ KAQME HFS   + L
Sbjct:  333 NKLSIEKFDKLSDQLIEVAVRGLEVLKGVIEMVIAKAQMEWHFSTMYAEL 382
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BLAST of mRNA_H-canaliculatus_F_contig13286.2685.1 vs. uniprot
Match: G4YU37_PHYSP (MI domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=G4YU37_PHYSP)

HSP 1 Score: 50.8 bits (120), Expect = 5.480e-6
Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 SQMTLEKFNKLSATFMEVGLRDPEVVTGVIDMIVDKAQMEPHFSRCASSL 150
            +++++EKF+KLS   +EV +R  EV+ GVI+M++ KAQME HFS   + L
Sbjct:  339 NKLSIEKFDKLSDQLIEVAVRGLEVLKGVIEMVIAKAQMEWHFSTMYAEL 388
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BLAST of mRNA_H-canaliculatus_F_contig13286.2685.1 vs. uniprot
Match: A0A3R7G0R1_9STRA (MI domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G0R1_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.480e-6
Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 SQMTLEKFNKLSATFMEVGLRDPEVVTGVIDMIVDKAQMEPHFSRCASSL 150
            +++++EKF+KLS   +EV +R  EV+ GVI+M++ KAQME HFS   + L
Sbjct:  375 NKLSIEKFDKLSDQLIEVAVRGLEVLKGVIEMVIAKAQMEWHFSTMYAEL 424
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13286.2685.1 vs. uniprot
Match: A0A662XRK1_9STRA (MIF4G domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRK1_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.400e-5
Identity = 23/50 (46.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 SQMTLEKFNKLSATFMEVGLRDPEVVTGVIDMIVDKAQMEPHFSRCASSL 150
            +++++EKF+KLS   +EV +R  +V+ GVI+M++ KAQME HFS   + L
Sbjct:  441 NKLSIEKFDKLSDQLIEVAVRGLDVLKGVIEMVIAKAQMEWHFSTMYAEL 490
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13286.2685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5L9P4_9PHAE1.720e-1577.08MI domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LKQ5_ECTSI3.210e-1572.00Eukaryotic initiation factor 4G n=1 Tax=Ectocarpus... [more]
A0A7S2BR93_9STRA2.670e-850.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A836CBQ1_9STRA2.920e-654.55Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
H3GUW0_PHYRM2.930e-648.00MI domain-containing protein n=1 Tax=Phytophthora ... [more]
A0A6A3KK52_9STRA5.480e-648.00MIF4G domain-containing protein n=1 Tax=Phytophtho... [more]
W2Q3D8_PHYPN5.480e-648.00MI domain-containing protein n=14 Tax=Phytophthora... [more]
G4YU37_PHYSP5.480e-648.00MI domain-containing protein n=6 Tax=Phytophthora ... [more]
A0A3R7G0R1_9STRA5.480e-648.00MI domain-containing protein n=4 Tax=Phytophthora ... [more]
A0A662XRK1_9STRA1.400e-546.00MIF4G domain-containing protein (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13286contigH-canaliculatus_F_contig13286:2674..2823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue4.5e-12
Seed eggNOG ortholog2880.D8LKQ5
KEGG koko:K03260
KEGG Pathwayko03013,ko05416,map03013,map05416
KEGG ModuleM00428
GOsGO:0000932,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016043,GO:0016281,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0031369,GO:0032991,GO:0034063,GO:0034622,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG0401@1,KOG0401@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size144
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929065.9278147-UTR-H-canaliculatus_F_contig13286:2673..26791622929065.9278147-UTR-H-canaliculatus_F_contig13286:2673..2679Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13286 2674..2679 +
1696845666.666067-UTR-H-canaliculatus_F_contig13286:2673..26791696845666.666067-UTR-H-canaliculatus_F_contig13286:2673..2679Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13286 2674..2679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929065.9470508-CDS-H-canaliculatus_F_contig13286:2679..28231622929065.9470508-CDS-H-canaliculatus_F_contig13286:2679..2823Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13286 2680..2823 +
1696845666.684587-CDS-H-canaliculatus_F_contig13286:2679..28231696845666.684587-CDS-H-canaliculatus_F_contig13286:2679..2823Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13286 2680..2823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13286.2685.1prot_H-canaliculatus_F_contig13286.2685.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13286 2680..2823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13286.2685.1

>prot_H-canaliculatus_F_contig13286.2685.1 ID=prot_H-canaliculatus_F_contig13286.2685.1|Name=mRNA_H-canaliculatus_F_contig13286.2685.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=48bp
MTLEKFNKLSATFMEVGLRDPEVVTGVIDMIVDKAQMEPHFSRCASSL
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mRNA from alignment at H-canaliculatus_F_contig13286:2674..2823+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13286.2685.1 ID=mRNA_H-canaliculatus_F_contig13286.2685.1|Name=mRNA_H-canaliculatus_F_contig13286.2685.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=150bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13286:2674..2823+ (Hapterophycus canaliculatus Oshoro5f female)
TCGCAGATGACGCTGGAAAAGTTCAACAAGTTGAGCGCCACCTTCATGGA
GGTCGGCCTCCGCGACCCGGAGGTTGTGACCGGGGTGATCGACATGATCG
TCGATAAGGCGCAGATGGAGCCCCACTTCTCCAGGTGCGCCAGCAGCTTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13286:2674..2823+

>mRNA_H-canaliculatus_F_contig13286.2685.1 ID=mRNA_H-canaliculatus_F_contig13286.2685.1|Name=mRNA_H-canaliculatus_F_contig13286.2685.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=288bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13286:2674..2823+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACGCTGGAAAAGTTCAACAAGTTGAGCGCCACCTTCATGGAGGTCGG
CCTCCGCGACCCGGAGGTTGTGACCGGGGTGATCGACATGATCGTCGATA
AGGCGCAGATGGAGCCCCACTTCTCCAGGTGCGCCAGCAGCTTGATGACG
CTGGAAAAGTTCAACAAGTTGAGCGCCACCTTCATGGAGGTCGGCCTCCG
CGACCCGGAGGTTGTGACCGGGGTGATCGACATGATCGTCGATAAGGCGC
AGATGGAGCCCCACTTCTCCAGGTGCGCCAGCAGCTTG
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