mRNA_H-canaliculatus_F_contig1328.2682.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1328.2682.1
Unique NamemRNA_H-canaliculatus_F_contig1328.2682.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1328.2682.1 vs. uniprot
Match: A0A6H5JRW1_9PHAE (DUSP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRW1_9PHAE)

HSP 1 Score: 377 bits (968), Expect = 2.880e-122
Identity = 202/312 (64.74%), Postives = 235/312 (75.32%), Query Frame = 2 
Query:  191 RLPSIGHKMSTVFGETGPKNVQALSHPTRRQSKVGP--PGPVTTDGGRRMSLDSEMAAAEAGDHFPD-PSQGHMGETWP----AVQPPPSSTSSSSTRKGIDRWSSG---LYKSSKQTTSQRFAQPLASEGQGSVFPVGLPLSRRRALEVDLIKRFDR----LTINTHVGEFWFLIDAIWMSKWIDFVMGKTGPPGPISNNNLFVQYAGNRRESLLAKHAASARSGVMTCRPDLRLKEGLQKVRDYRAVHPLVWYIYREIYSADDAPELCRWKANIYQAEVLATRKGKFSEEMHTKAVYELRKFCAKVKNEL 1084
            +LP     M+TVFGE+GP NV+ L+HPTRRQS   P  PGP      RRMS DSE  AAEAGDHF   P+ G      P     VQ P SS S     +GI+RWSS    +  SSK T S+RFAQPLASEG GSVFPV LPLS+RRA EV++IKRFDR    L +NTHVGEFWF+IDAIWMS W++FVMGK+GPPGPISN+NLF  Y+GNRRES+L  HAAS+  GVM  RPDL+LK+GL+K++DYRAVHPLVWY++REIYSADDAPELCRWKA IYQAEV  TRK K  EE HTKAVYELR+FCAK+K ++
Sbjct:    5 KLPGF---MATVFGESGPTNVEVLNHPTRRQSNGAPGAPGP-----NRRMSADSEAVAAEAGDHFEMLPTSGTQAPRLPQRPTTVQAPLSSGSDRG--RGIERWSSSSSRIMASSKVTASRRFAQPLASEGHGSVFPVELPLSKRRAFEVEIIKRFDRRRQLLDVNTHVGEFWFIIDAIWMSTWVNFVMGKSGPPGPISNHNLFTHYSGNRRESMLVHHAASSARGVMASRPDLKLKDGLRKLKDYRAVHPLVWYLFREIYSADDAPELCRWKAEIYQAEVQITRKLKCCEEAHTKAVYELRRFCAKIKEDM 306
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1328.2682.1 vs. uniprot
Match: D8LDU8_ECTSI (DUSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU8_ECTSI)

HSP 1 Score: 377 bits (967), Expect = 1.400e-121
Identity = 198/315 (62.86%), Postives = 236/315 (74.92%), Query Frame = 2 
Query:  185 DSRLPSIGHK------MSTVFGETGPKNVQALSHPTRRQSK--VGPPGPVTTDGGRRMSLDSEMAAAEAGDHF----PDPSQGHMGETWPAVQPPPSSTSSSSTRKGIDRWSSG---LYKSSKQTTSQRFAQPLASEGQGSVFPVGLPLSRRRALEVDLIKRFDRLTINTHVGEFWFLIDAIWMSKWIDFVMGKTGPPGPISNNNLFVQYAGNRRESLLAKHAASARSGVMTCRPDLRLKEGLQKVRDYRAVHPLVWYIYREIYSADDAPELCRWKANIYQAEVLATRKGKFSEEMHTKAVYELRKFCAKVKNEL 1084
            + R P+ G++      M+TVFGE+GP NV+ L+HPTRR+SK   GPPGP      RRMS DS   AAEAGDHF    P  +Q       P +   P S+ S   R GI+RWSS    +  SSK T S+RFAQPLASEG GSVFPVGLPLS+RRA EV+++KRFDRL +NTHVGEFWF+IDAIWMS W++FVMGK+GPPGPISN+NLF  Y GNRRES+L  HAAS+  GVM  RPDL+LKEGL+K++DYRAVHPLVWY++REIYSADDAPELCRWKA+IY AEV  TRK K  E  HTKAVYELR+F  K+K ++
Sbjct:   32 NQRPPAAGNRVSLRSFMATVFGESGPTNVEVLNHPTRRKSKGTAGPPGPS-----RRMSADSAAVAAEAGDHFEMMPPSGAQAPRLPQRPTMVQAPLSSGSDRGR-GIERWSSSSSRIMASSKVTASRRFAQPLASEGHGSVFPVGLPLSKRRAFEVEIMKRFDRLDVNTHVGEFWFIIDAIWMSTWVNFVMGKSGPPGPISNHNLFTHYTGNRRESMLVHHAASSARGVMASRPDLKLKEGLRKLKDYRAVHPLVWYLFREIYSADDAPELCRWKADIYLAEVQITRKLKCCEGAHTKAVYELRRFSTKIKEDM 340
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1328.2682.1 vs. uniprot
Match: D7FUK6_ECTSI (DUSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUK6_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 8.850e-43
Identity = 99/265 (37.36%), Postives = 135/265 (50.94%), Query Frame = 2 
Query:  515 TSQRFAQPLASEGQGSVFPVGLPLSR-----------------------------------------------------------RRALEVDLIKRFDRLTINTHVGEFWFLIDAIWMSKWIDFVMGKTGPPGPISNNNLFVQYAGNRRESLLAKHAASARS---------------GVMTCRPDL---RLKEGLQKVRDYRAVHPLVWYIYREIYSADDAPELCRWKANIYQAEVLATRKGKFSEEMHTKAVYELRKFCAKVKN 1078
            T++ FA PLA+EG GSVFPV LP++R                                                           RR  E+  IK+FDRL IN +VGEFW LIDA W+S+W+ FV+G+ GPPGPISN+ L+       RE   A  AA+A +               G +   P L   + K  LQ + DYRA+HP+VWYI+REIY+ D  P++CRWK ++Y  EV A R+ +  E  H KA+Y+LR+F A++K+
Sbjct:  199 TNEIFAHPLATEGAGSVFPVDLPMNRSTDTRYGLCPATSLVPTRPSVRRGWEFTALSLVVPGVLSCYLPLGLAAXXXXXXXXXXXRRIFEIGFIKQFDRLAINPNVGEFWMLIDAHWVSRWVAFVLGQAGPPGPISNDRLY-------REDAFAPTAAAAAAPQSVAYDVAFRREAPGPIRVGPTLSKTKFKADLQAISDYRAIHPVVWYIFREIYTTDGTPDICRWKLDLYAEEVSAMRRARILEPNHIKAIYQLRRFVARIKH 456
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1328.2682.1 vs. uniprot
Match: D7FUK5_ECTSI (DUSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUK5_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.830e-31
Identity = 68/128 (53.12%), Postives = 86/128 (67.19%), Query Frame = 2 
Query:  527 FAQPLASEGQGSVFPVGLPLSRRRALEVDLIKRFDRLTINTHVGEFWFLIDAIWMSKWIDFVMGKTGPPGPISNNNLFVQYAGNRRESLLAKHAASARSGVMTCRPD----LRLKEGLQKVRDYRAVH 898
            FAQPLASEG GSVFP+ LP+S RR  EV+ IK+FDRL IN ++GEFW LIDA W+S+W+ FV+G+ GPPGPISN  LF + A +      A +AA  R+      P      + KE LQ + DYRA+H
Sbjct:  132 FAQPLASEGAGSVFPLDLPMSSRRVYEVEFIKQFDRLAINPNIGEFWMLIDAHWVSRWVAFVLGQAGPPGPISNGRLFTEDAFSPMPRSGAYNAAFRRTAPTRGAPMPAEMSKFKEDLQAISDYRAIH 259
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1328.2682.1 vs. uniprot
Match: A0A6H5K0W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W2_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.470e-24
Identity = 60/151 (39.74%), Postives = 86/151 (56.95%), Query Frame = 2 
Query:  632 RLTINTHVGEFWFLIDAIWMSKWI-DFVMGKTGPPGPISN--NNLFVQYAGNRRESLLAKHAASARSGVMTCRPDLRLKEGLQKVRDYRAVHPLVWYIYREIYSADDAPELCRWKANIYQAEVLATRKGKFSEEMHTKAVYELRKFCAKVK 1075
            RL IN ++GEFW LIDA W+S+   +  +  T    P S   N  F + A  R   L A+ +              + KE LQ + DYRA+HP+VWYI+REIY+ D  P++CRWK  +Y  EV A R+ +      TKA+++LR+F A++K
Sbjct:   11 RLAINPNIGEFWMLIDAHWVSRLFREDALSPTAAAAPPSAGFNAAFRRAAPTRGVPLPAEMS--------------KFKEDLQAISDYRAIHPVVWYIFREIYTTDGTPDICRWKLEVYAEEVAAMRRTRILGPSQTKAIHQLRRFAARIK 147
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1328.2682.1 vs. uniprot
Match: D7FUK4_ECTSI (DUSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUK4_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.020e-22
Identity = 59/133 (44.36%), Postives = 74/133 (55.64%), Query Frame = 2 
Query:  563 VFPVGLPLSRRRALEVDLIKRFDRLTINTHVGEFWFLIDAIWMSKWIDFVMGKTGPPGPISNNNLFVQYAGNRRESLLAKHAASARSGVMTCRPDLRLKEGLQKVRDYRAVHPLVWYIYREIYSADDAPELCR 961
            VFP   PL RRRA E+ LIK+FDR TIN HVGEFWF+IDA W++ W+ FVMG+   PGPISN NL+    G+  +S  AK                                 LVW+I++EIY  D+AP +CR
Sbjct:  200 VFPAEFPLDRRRATELALIKKFDRPTINPHVGEFWFVIDAKWINSWVKFVMGQASAPGPISNLNLYPP-DGDGDQSTSAKS--------------------------------LVWFIFQEIYGTDEAPGICR 299
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1328.2682.1 vs. uniprot
Match: A0A6H5JRF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF3_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.310e-12
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 2 
Query:  593 RRALEVDLIKRFDRLTINTHVGEFWFLIDAIWMSKWIDFVMGKTGPPGPISNNNLFVQ 766
            RRA E+ LIK+ DRL IN HVGEFWF+IDA W++ W+ FVMG+   PG ISN NL+ Q
Sbjct:  248 RRATELALIKKGDRLIINPHVGEFWFVIDAKWINSWVKFVMGQASAPGAISNLNLYPQ 305
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1328.2682.1 vs. uniprot
Match: A0A2D4C3B3_PYTIN (DUSP domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C3B3_PYTIN)

HSP 1 Score: 73.6 bits (179), Expect = 3.450e-11
Identity = 48/153 (31.37%), Postives = 75/153 (49.02%), Query Frame = 2 
Query:  584 LSRRRALEVDLIKRFDRLTINTHVGEFWFLIDAIWMSKWIDFVMGKTGPPGPISNNNLFVQYAGNRRESLLAKHAASARSGVMTCRPDLRLKEGLQKVRDYRAVHPLVWYIYREIYSADDAPELCRWKANIYQAEVLATRKGKFSEEMHTKAV 1042
            + +RR  E+ L+ R D+  ++    E WFL+   W+ +W+ F       PGPISN++L V    + RE L         SG    RPD   + GL+ ++DYR V P+VW +  E++  D+ P L R+  +     V  T    F  E   +A+
Sbjct:   47 MDQRRKAELALVXRHDKRKLSRK--ECWFLVSTEWLERWVAFTTHGGPVPGPISNDSLLVP---DWRERL---------SGAAVGRPDAT-RPGLELMKDYRGVAPMVWSLLVELHGDDNIPILGRYSLDADGEPVSETEINAFLREPRLRAM 184
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1328.2682.1 vs. uniprot
Match: G4ZY76_PHYSP (DUSP domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZY76_PHYSP)

HSP 1 Score: 65.9 bits (159), Expect = 1.890e-7
Identity = 44/129 (34.11%), Postives = 65/129 (50.39%), Query Frame = 2 
Query:  593 RRALEVDLIKRFDRLTINTHVGEFWFLIDAIWMSKWIDFVMGKTGP-PGPISNNNLFVQYAGNRRESLLAKHAASARSGVMTCRPDLRLKEGLQKVRDYRAVHPLVWYIYREIYSADDAPELCRWKANI 976
            RR LE+ L+  +DR  +     E WF + A WM++W  FV GK GP PGPI+N+ L         E      AA  RSG             L+ ++D+R V P+VW ++  ++   DAP + R+  +I
Sbjct:  408 RRRLELKLVMTYDRKELK--FKECWFAVHADWMNRWALFV-GKGGPLPGPITNHELLQPGWDTASED--PNRAAFVRSG-------------LEIMKDFRLVTPMVWSLFVALHGEGDAPPIARFTLDI 518
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1328.2682.1 vs. uniprot
Match: A0A8J5IT20_9STRA (DUSP domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IT20_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 9.650e-7
Identity = 54/186 (29.03%), Postives = 84/186 (45.16%), Query Frame = 2 
Query:  422 VQPPPSSTSSSSTRKGIDRWSSGLYKSSKQTTSQRFAQPLASEGQGSVFPVGLPLSRRRALEVDLIKRFDRLTINTHVGEFWFLIDAIWMSKWIDFVMGKTGP-PGPISNNNLFVQYAGNRRESLLAKHAASARSGVMTCRPDLRLKEGLQKVRDYRAVHPLVWYIYREIYSADDAPELCRWKANI 976
            + P  S+T  S   K    WS+ L+   +  T+   A+      +         +  RR LE+ L+  +DR  +     EFWF + + WM++W  F  GK GP PGPI+N+ L         E   A      R  V   RP      GL+ ++D+R V P+VW +   ++   DAP + R+  +I
Sbjct:  162 IGPTSSATDPSEDVKAGGEWSNMLWSGLRAATTLTAAKTSTETVED--------MELRRRLELQLVMSYDRKELK--FKEFWFAVHSEWMNRWALFA-GKGGPEPGPITNHELL--------EPGFAIGEDPNR--VAFVRP------GLEIMKDFRFVTPMVWSLLAALHGPGDAPPIARFTLDI 320
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1328.2682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JRW1_9PHAE2.880e-12264.74DUSP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LDU8_ECTSI1.400e-12162.86DUSP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FUK6_ECTSI8.850e-4337.36DUSP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FUK5_ECTSI1.830e-3153.13DUSP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K0W2_9PHAE2.470e-2439.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUK4_ECTSI1.020e-2244.36DUSP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JRF3_9PHAE1.310e-1262.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2D4C3B3_PYTIN3.450e-1131.37DUSP domain-containing protein n=1 Tax=Pythium ins... [more]
G4ZY76_PHYSP1.890e-734.11DUSP domain-containing protein n=1 Tax=Phytophthor... [more]
A0A8J5IT20_9STRA9.650e-729.03DUSP domain-containing protein n=1 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1328contigH-canaliculatus_F_contig1328:17972..24605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score378.3
Seed ortholog evalue3.4e-102
Seed eggNOG ortholog2880.D8LDU8
EggNOG free text desc.Source PGD
EggNOG OGs2EE7P@1,2SJP6@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons8
Model size2235
Cds size879
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1328.2682.1prot_H-canaliculatus_F_contig1328.2682.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1328 19114..23513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929065.4721036-UTR-H-canaliculatus_F_contig1328:17971..191131622929065.4721036-UTR-H-canaliculatus_F_contig1328:17971..19113Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1328 17972..19113 -
1696845666.478636-UTR-H-canaliculatus_F_contig1328:17971..191131696845666.478636-UTR-H-canaliculatus_F_contig1328:17971..19113Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1328 17972..19113 -
1622929065.6289804-UTR-H-canaliculatus_F_contig1328:23513..235201622929065.6289804-UTR-H-canaliculatus_F_contig1328:23513..23520Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1328 23514..23520 -
1696845666.5603275-UTR-H-canaliculatus_F_contig1328:23513..235201696845666.5603275-UTR-H-canaliculatus_F_contig1328:23513..23520Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1328 23514..23520 -
1622929065.6548188-UTR-H-canaliculatus_F_contig1328:23871..239901622929065.6548188-UTR-H-canaliculatus_F_contig1328:23871..23990Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1328 23872..23990 -
1696845666.5709925-UTR-H-canaliculatus_F_contig1328:23871..239901696845666.5709925-UTR-H-canaliculatus_F_contig1328:23871..23990Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1328 23872..23990 -
1622929065.676631-UTR-H-canaliculatus_F_contig1328:24517..246051622929065.676631-UTR-H-canaliculatus_F_contig1328:24517..24605Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1328 24518..24605 -
1696845666.581737-UTR-H-canaliculatus_F_contig1328:24517..246051696845666.581737-UTR-H-canaliculatus_F_contig1328:24517..24605Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1328 24518..24605 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929065.4860327-CDS-H-canaliculatus_F_contig1328:19113..192461622929065.4860327-CDS-H-canaliculatus_F_contig1328:19113..19246Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1328 19114..19246 -
1696845666.49423-CDS-H-canaliculatus_F_contig1328:19113..192461696845666.49423-CDS-H-canaliculatus_F_contig1328:19113..19246Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1328 19114..19246 -
1622929065.5030658-CDS-H-canaliculatus_F_contig1328:19424..194851622929065.5030658-CDS-H-canaliculatus_F_contig1328:19424..19485Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1328 19425..19485 -
1696845666.5044985-CDS-H-canaliculatus_F_contig1328:19424..194851696845666.5044985-CDS-H-canaliculatus_F_contig1328:19424..19485Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1328 19425..19485 -
1622929065.5253205-CDS-H-canaliculatus_F_contig1328:20143..202541622929065.5253205-CDS-H-canaliculatus_F_contig1328:20143..20254Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1328 20144..20254 -
1696845666.5146174-CDS-H-canaliculatus_F_contig1328:20143..202541696845666.5146174-CDS-H-canaliculatus_F_contig1328:20143..20254Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1328 20144..20254 -
1622929065.5639348-CDS-H-canaliculatus_F_contig1328:20668..208231622929065.5639348-CDS-H-canaliculatus_F_contig1328:20668..20823Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1328 20669..20823 -
1696845666.5245163-CDS-H-canaliculatus_F_contig1328:20668..208231696845666.5245163-CDS-H-canaliculatus_F_contig1328:20668..20823Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1328 20669..20823 -
1622929065.5797234-CDS-H-canaliculatus_F_contig1328:21376..215491622929065.5797234-CDS-H-canaliculatus_F_contig1328:21376..21549Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1328 21377..21549 -
1696845666.5341976-CDS-H-canaliculatus_F_contig1328:21376..215491696845666.5341976-CDS-H-canaliculatus_F_contig1328:21376..21549Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1328 21377..21549 -
1622929065.6068199-CDS-H-canaliculatus_F_contig1328:23267..235131622929065.6068199-CDS-H-canaliculatus_F_contig1328:23267..23513Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1328 23268..23513 -
1696845666.543978-CDS-H-canaliculatus_F_contig1328:23267..235131696845666.543978-CDS-H-canaliculatus_F_contig1328:23267..23513Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1328 23268..23513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1328.2682.1

>prot_H-canaliculatus_F_contig1328.2682.1 ID=prot_H-canaliculatus_F_contig1328.2682.1|Name=mRNA_H-canaliculatus_F_contig1328.2682.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=293bp
MSTVFGETGPKNVQALSHPTRRQSKVGPPGPVTTDGGRRMSLDSEMAAAE
AGDHFPDPSQGHMGETWPAVQPPPSSTSSSSTRKGIDRWSSGLYKSSKQT
TSQRFAQPLASEGQGSVFPVGLPLSRRRALEVDLIKRFDRLTINTHVGEF
WFLIDAIWMSKWIDFVMGKTGPPGPISNNNLFVQYAGNRRESLLAKHAAS
ARSGVMTCRPDLRLKEGLQKVRDYRAVHPLVWYIYREIYSADDAPELCRW
KANIYQAEVLATRKGKFSEEMHTKAVYELRKFCAKVKNELQA*
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mRNA from alignment at H-canaliculatus_F_contig1328:17972..24605-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1328.2682.1 ID=mRNA_H-canaliculatus_F_contig1328.2682.1|Name=mRNA_H-canaliculatus_F_contig1328.2682.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6634bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1328:17972..24605- (Hapterophycus canaliculatus Oshoro5f female)
AGGACACAACACCCGCCGTATTCAACCTCGGACAACGGCCTGCCAGCAGC
CAACCAATTCCTTATATCTTCGCATCGCGCATTGTGGGGTGAGTTCGTGT
CGTGTGTGTTCGGGGTGGCAGAGAAGGAAAAGGACCGATCGTGAACCCGT
ACATTGAACATTTCCCCACTACCCATCGAATTGGTCGCGATCGGTCGAGC
AAGCAGAGTCGTTGGGATTCCTGAGGCTCTTCTATACTCCCTCCCGCCGT
GGGCTGGTAAATACCGCTGGCGTGCTTCTCCTGTACGACTCGCTGGGCCG
ACAACTCTTTGGGTTGAGAATAGCTGGGTGAAAGGCGGACGAAGCTACGG
ATTGGGTGTGTGAGTTCCTCCTACCCCTCGTCCAACCTGAGGGACTGGTT
GGATACCACCGAGCACAAGATGGAACGCGTGCGTTCATTGCGCTGCGCGA
ATCTTGGCGCAGTGTGCCTTGCACAGCAGCCTAATCCAGAACAAGCATCA
CCATTCGAGCAATACTGCCGGCGTCGGAGGTCCAGCGTCGCGAAGACCTT
TTGAATTCGATGTCCGGGGCGCAACCTGATTCCGGCGGTTGTCACCCTGG
ACGCGTTTTGGGCAGTTGTCTGTCGAAACGCGGGCCAATGTCCCTGATGC
ACGAATAGATCGGCCCTGGAGGCATGGAGGGCGGCGAGTTCTAGACAACG
GACCACGGACTGATTCAAGACTTCCCTCGATAGGGTGTGTATCATTTTGT
GTAGCAAGGCTGTAGGTATAACAACAATCCTCCACAAACGTAACCGCTTG
GTTTCAACGTGCCCCAGGAGAAAAGAATGCGAAAGCTAGGTCGCTACGAC
AGAGCGTCGCAACAAGTGCCACTTGTCCGCCGACTTCATGATCGTACTCG
TATCATAACACAAGACGTTTTCCCAAGCTCCCCAAGCTATTTCGCACGAA
TCTTGCTCTCTATGATGAAATCCATATTTGCTACTTGCTGCCGTGCACCT
CGCACCACCTGATTCCACACTTTTATACATTCCTCCGCGTACTCTGCACG
CACGCATTCGTTTCCGTTCCCTCCGATCGATGCAGGCACAAAATGTCGAC
GGTGTTCGGCGAGACCGGCCCCAAGAACGTGCAGGCGCTTTCCCACCCCA
CCCGTCGCCAGTCAAAGGTGGGCCCACCAGGTCCGGTGACCACGGATGGC
GGAAGGAGGATGTCCTTGGACAGCGAGATGGCCGCTGCCGAGGCAGGAGA
CCACTTTCCTGACCCCTCCCAGGGTCATATGGGCGAGACGTGGCCGGCGG
TTCAGCCTCCGCCAAGTTCAACCAGCAGCAGCAGCACGGTGAGTCAAGAT
TGTGTTGCGTTCCAGAAGAATGATCAGGTTTTCGTGGGGTTCGTTGGATT
CGTCTTCGTGTTCTTTCTTGCGGCGGGATGGATGGAAACGTTCGACCTGA
GGTCGGTCCGACTTTGTACCACCTTTTTCCCAGCGAACAACTGCTGCGTG
GAAGGGAAAGCATCGCGACCTCTTTTTTTTTGCTTGAGAAGCAGGCGGTT
GACCCACGATTGACCAGCGCCGCACTACACGCAAAGTCGCAAGCCGGAGT
CCCCCCACACGTTGAAACGAACAAGGTAGGAAAACATGTATTCCACGTGT
TGTTCCTCGATAGGAAGGAATGAAGCCACCAGCGAGAGTCCCGCTGTACC
TATGAGCACATGTGAAGTTTCGGTAGGGCTGCAAGTGGGGTCAACCCGCA
ACCCAAGGCCGATCGGGCGTAACGCAGCACTTTCAGACCCAGAGTGCGAA
CATTGTTGGCTCTTGACGGCCTCGAAACCGACCGACCGCGCAACGCCGAG
ATGGATGTCTAGACGATCTGACAATAGAGTTGCGAGCCTTTGGCGGATGA
GCAAGCACGAGAAGAGGGCGGGCCAGCGGCCCTGAAAGCAAAAGCTGTGA
TACATACAGCGATGCATCAGAGCTTTAGCCTACGGTGCATGTAGAGACGA
CACTCTTGGGCTTGTCTGTAGCGTTTCAAAGCAAGCGACGGGGCGGTCAA
AACGGGCCGCTCGGTGCGGCTGCCGCTGCCGCCGCCGCCGCCGCCGCCGC
GCCGCAGCGGTCTCTGAAAAGGTTATTGAGCTATCTTTCACTGGAGTGGA
CGAGTCGATTGTCGACGAAAAGTGTGGCTTTGGAGAAGAGGTGGGGGATG
TAGGGTGGCGGGGTGGCAAAGCCTGCCGACGTGTTGTGCGTTCCCGAGGT
CTGTCTTTCGTTCGGTGTGGGTTCGCCTGTGTCACGAGGCAGGCACGAGG
GGCTGTGTGAACCTGGCAGGCACGACAGCCCCGCCGCGTCATTATGGCCT
CGGCATCCATTTGGTGCTTACTCCTTCGCCGAGGCACGCAACGCAGTCCT
GTTGGTGGCGCGAGGCGTGGAAATGTGAAAAATATTTTCCCAACCGACCG
GCCACATAACAAGAGGAGGTCGACCGAAGCACCCGAGAACTCGGGGGCAA
TCTCTGAATTATTTTCAGCCTGTGGGACGATGCTTCATGCCGTTCCTCCC
TCTAGCAGCCGCTGGGGTAACATACGGCTTGGGGAGAAGGGGTTAACAGG
GCAAGGGTATCACGTGTCGGGCGTAGTTGCGGCGAGGAGCGCCTCGGCCC
GTGCGCGAGGTTTAAGTTTGAGCAACTTACGCTCGTTGCTCAGAGAGCAC
CCGCGGTAGTCTTCCCATCTGCGGCCCCCGTGGGTCTTGGGAGACCGGGC
GAAGAAAAGGTGGAGTTGCCCTCGGTGGATTGCGAAGGATCGTTTGCGGC
ATCGCAGGGTCTTGGAAGCACAAAATACGTCCGTTGAGGATAACGGCAAC
CGCCGCAGAAGCCAGTGACAGCAGCGAGAGCACAGCGGCGAGATGCGCGA
CGGCCACCGCACAACGTTTGCAGGGGATGGTCTTGCGGGGGGAATGTAGG
GATGGCCTCGTGAGACCGACATGAAGTAGGGCTTTTCCCCCGGAGACAGA
CTGCTCATCCCCTGCGGATGCTGACCAACAGCCCGACGCCTCCCTTCCGC
CAACAGAGAAAGGGTATCGACAGGTGGTCGTCGGGGCTCTACAAGAGTTC
CAAGCAGACCACATCGCAGCGGTTCGCGCAGCCTCTGGCGAGCGAGGGGC
AGGGTAGTGTGTTTCCCGTGGGACTGCCCTTGTCCAGGAGACGAGCCCTG
GAAGTGGATTTGATCAAGAGGTTCGACAGGTGAGCCTCCGACTTGTTCGC
TTCGAAGCTCTCGATCAACCCCGTGTTCGTGGGATCCCCTTCTTCGAGTT
GAGTCCGATCTAGGGAAGCTTGCATGCGGCCCCGAGGTAGTCAAATATTA
CAGACCCACGCTCTTGTGGTACGAAACGGTCTTCATTCCGGGCAGGTGTA
AAGAGACACAAATAACCTCTTTAACATCGCTGTGGCCGAGGAAGAAAGGC
GGAGCAGGTAGAAGTCAAGAATGGTGGCAACCGCGACTGTCATGAAACAG
ATCGACGTGTACGCGCTTAGTCGGTATCAACTAGCGATCATCTTTCGGGA
TAGTTTCACGTCCTGTGTACCTCTCAACACGCTGCGCAACGGCCGCGAAA
TTTGCAGCCATCTGTGTCCCGTTGTGTGTGGTGGTGCCACGAGTGCCCCT
CCCTCATCTGCATCCGGGAGGAGAAATCTCGAGGGTCGGTCATTTTGGTC
TGTTTTCGCGCAACTTGTCCTCCTTTGCTCGGAACGACGACATGTTTCCT
GTTCTTTACGCCACTTGAAAATGAAAATGCAGGCTGACCATCAACACGCA
CGTGGGCGAGTTTTGGTTCTTGATCGACGCGATCTGGATGTCCAAGTGGA
TAGATTTTGTCATGGGAAAGACGGGCCCTCCGGGACCCATCTCCAACAAT
AACCTCTTCGTCCAGTATGCCGGCAATAGACGAGAATGTGAGCCAAGAAG
CGCTAGGATATCCGTTCCCTGCCGGCCGGCCGGCCGGCCGGCCGGCCGGT
CGGGGTCAAACGGCAACGATGATAAATTTCGTGATGGACGTTTCGGCTCG
ATGTTTTGGTAGGTTTGGACGAAAGTAATTATTCCTTCCGTCTGAATATC
TCGTACGAAGTACATGAGGCACAACCGGGTGGAAATACATCAGGAAGTTG
TTTGTATCTTGTATGGTAGTAATTTACTCGTTCTTTCATTGCTGGAGGGC
TTTTGATTACTGTTGGATTTAAAGTTCTAACCTACAAAAGTAAGTGTGTT
TTTCTTTTTTTGTGTGCGTTTGAACTGCTTGTCTGGTACGCTTCTTCCTA
CTCAACCATTCCGCTGCTGCATTTGCCTTTCCCTCTCACTTGTCATTGCA
GCCTTGCTCGCCAAGCACGCGGCCAGCGCCCGAAGCGGCGTGATGACATG
TCGACCTGACCTCAGACTTAAAGAAGGCCTTCAGAAAGTGCGGGACTATC
GCGCAGTGCACCGTGAGTTGTTTCTTTTCATTGCAAGCAACCCCCACCCC
CCGTGTTGGTTCGTTGCACGGCTTTCCACCTGACGGTGCCGAGTACGAAA
GCGCCGAAGTCGACCGAGGGCCAAAGTTGGCCGACGCTTTGTTTCGCATC
AGTCGATCACTTTCTTGCAAACAATTGTGCCACTTCCTTGTAGCATAGGT
GAATCTTTGTGCTTTCAGCAGTTCGTCACCCGCGCATGCACTTCCTCTGT
ACAACCCGTTCACAGCACTCCAAAGTCTTGCTCCAAATACCGCTTCCAAA
CAATGAAAGTAGGCATTAGGGTCGAATTCTTCCAATTTCAATTCTTCTTC
GCAAGTTATCAGCCCGCAAAACATTTGCGGGGGTTGGCTTCCAAAGTTTC
TACAGAAATTTGGAGGAACGCCTACAAGGCTTCCATTGTTTGGCAAGTTG
AAAATTTGGAAAATGAAACCCAAAATTTGGAACGTTTACATCGGGCCTAA
TCGTGTCTGCAAGGGAGCGCGGCGCCATGGTCCTCTCGTTTAGATATTCA
AGATTTCAAGTTGCGCAGATACCGCCCCCCTTGCATTTCGTTGCCCGTCC
GACCCCACTCTTAAACGCCCATTTCCCGCCTCCTCGCTGCCTCGCTGGCC
CCTTATCTCCCGGTTCCCAGCACTTGTATGGTACATCTACCGGGAGATTT
ACTCGGCGGACGATGCTCCCGAATTATGCAGGTACAATCTAGTTGTGGCT
GTGGTCTATTTGCACGCAAGCGTAGAACGATTTCTCTTCGCGGCTTGAAA
ATGATCGGCGGACGAGCAAGACGTGTTGGTGACTATCTTTGTGAGGCGAG
GCGCCTGTACTCTAACGGACTACGTCAATTCTGGTCCATGCCGCTCGTCT
GTTATGCAGGTGGAAAGCCAACATTTATCAAGCCGAGGTGTTGGCCACGA
GAAAGGGCAAGTTCAGCGAGGAGATGCACACCAAGGCTGTGTACGAGTTG
CGCAAATTCTGCGCGAAGGTCAAGAACGAGTTGCAGGCGTAGAGCACAAG
ACCGTCGAGAACCACTCCAACCGAAACCGTTCCGGATTTGTTTGACGCGG
AGCCAAGATCGCGCCGAAAGTGTGGTGTGCGAACTCCATTCGTGACCACC
CGGTGTGTTCCTAGGATATACGTACCGCTCGAAAGAAGAAACGCTCGAGT
CGGAGCCACCAGGAGTAACCGTTTACTTCGCATAGTTGCCGTTGACGTTG
AATAAGTACCGCTCGGCAGAGGAAATGCTCGAGTCGAATCCGCCGGGGGT
GTTCCTCTAATGTGCATACTCGTAGCTACCGTCGATGTTTATAAAGGAAC
CAATAAATAAGTGACGTGCCCTTCCGCTACCGCAGTCGGTGAATCGTCGA
AGCGCTTGGCGTAAACATAGCGCACTGCTTCTAGCAGCAGGGAGCGTCAC
GCAACTCTAGGCTTCAAGATGGATGTTGGAAGGGGAAGTTGGAACCCGAA
GTCTGGTGCATCGCCGGAGGGACTTATCGCACGCCGGTTCAGCGCCCGTC
GGGGTAAGCTGACCAAGCGAGTCGGCGGACGATTCACCCTGCACATCAAG
AGGGAATCCTCGAAACTTGGCCTTATGTAAAATACGCGATCCGCACTAGA
GAGAAAAGGATTGTTGGCACACCGCGCGCCTGTGCATACCCCTTGTACTT
TTAGCTTGACCCGGCCTGTCTGCCTGGTCAGAGTACCGTTGATTGCTGTA
GGCATACGTAGATTTTGATCGCATATTTGCGCCGAAGTTGGGAGTGTGTT
TGGGCTGTCTTGTCGTCTTGAGGTAATCTACATTTGAAATCCTTCGATTG
GGGCGGCCAAGCAATGCTTACCCGGGAAGTAGTAGGTCTACAGCGCAGAG
ACTCACTCTCGTTCTCGTACAAGCTTGAAGCAATATGTTTTACACTCGTA
GATGCCTCGAACAGGCGATGAAATAATTGCGTACGCACAACAAGTACGAC
CCGTCTCGTGCAGGTTCAGGTCTGCCCCTGGCCAAAGCAGAGAGCCTCAG
CTTGTATTCTAAATCAGGGTTTTTAGCTTGTTTTGTTGGTGGTCTCCAGT
CCACGTACGTAGAACAAGAGCAAGGAGATCGACAGCTTGCCACTCCGCAT
CACCTCCCCGCACAACCTCCCACTCGCTTCCGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1328:17972..24605-

>mRNA_H-canaliculatus_F_contig1328.2682.1 ID=mRNA_H-canaliculatus_F_contig1328.2682.1|Name=mRNA_H-canaliculatus_F_contig1328.2682.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1758bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1328:17972..24605- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGACGGTGTTCGGCGAGACCGGCCCCAAGAACGTGCAGGCGCTTTC
CCACCCCACCCGTCGCCAGTCAAAGGTGGGCCCACCAGGTCCGGTGACCA
CGGATGGCGGAAGGAGGATGTCCTTGGACAGCGAGATGGCCGCTGCCGAG
GCAGGAGACCACTTTCCTGACCCCTCCCAGGGTCATATGGGCGAGACGTG
GCCGGCGGTTCAGCCTCCGCCAAGTTCAACCAGCAGCAGCAGCACGATGT
CGACGGTGTTCGGCGAGACCGGCCCCAAGAACGTGCAGGCGCTTTCCCAC
CCCACCCGTCGCCAGTCAAAGGTGGGCCCACCAGGTCCGGTGACCACGGA
TGGCGGAAGGAGGATGTCCTTGGACAGCGAGATGGCCGCTGCCGAGGCAG
GAGACCACTTTCCTGACCCCTCCCAGGGTCATATGGGCGAGACGTGGCCG
GCGGTTCAGCCTCCGCCAAGTTCAACCAGCAGCAGCAGCACGAGAAAGGG
TATCGACAGGTGGTCGTCGGGGCTCTACAAGAGTTCCAAGCAGACCACAT
CGCAGCGGTTCGCGCAGCCTCTGGCGAGCGAGGGGCAGGGTAGTGTGTTT
CCCGTGGGACTGCCCTTGTCCAGGAGACGAGCCCTGGAAGTGGATTTGAT
CAAGAGGTTCGACAGAGAAAGGGTATCGACAGGTGGTCGTCGGGGCTCTA
CAAGAGTTCCAAGCAGACCACATCGCAGCGGTTCGCGCAGCCTCTGGCGA
GCGAGGGGCAGGGTAGTGTGTTTCCCGTGGGACTGCCCTTGTCCAGGAGA
CGAGCCCTGGAAGTGGATTTGATCAAGAGGTTCGACAGGCTGACCATCAA
CACGCACGTGGGCGAGTTTTGGTTCTTGATCGACGCGATCTGGATGTCCA
AGTGGATAGATTTTGTCATGGGAAAGACGGGCCCTCCGGGACCCATCTCC
AACAATAACCTCTTCGTCCAGTATGCCGGCAATAGACGAGAATGCTGACC
ATCAACACGCACGTGGGCGAGTTTTGGTTCTTGATCGACGCGATCTGGAT
GTCCAAGTGGATAGATTTTGTCATGGGAAAGACGGGCCCTCCGGGACCCA
TCTCCAACAATAACCTCTTCGTCCAGTATGCCGGCAATAGACGAGAATCC
TTGCTCGCCAAGCACGCGGCCAGCGCCCGAAGCGGCGTGATGACATGTCG
ACCTGACCTCAGACTTAAAGAAGGCCTTCAGAAAGTGCGGGACTATCGCG
CAGTGCACCCCTTGCTCGCCAAGCACGCGGCCAGCGCCCGAAGCGGCGTG
ATGACATGTCGACCTGACCTCAGACTTAAAGAAGGCCTTCAGAAAGTGCG
GGACTATCGCGCAGTGCACCCACTTGTATGGTACATCTACCGGGAGATTT
ACTCGGCGGACGATGCTCCCGAATTATGCAGCACTTGTATGGTACATCTA
CCGGGAGATTTACTCGGCGGACGATGCTCCCGAATTATGCAGGTGGAAAG
CCAACATTTATCAAGCCGAGGTGTTGGCCACGAGAAAGGGCAAGTTCAGC
GAGGAGATGCACACCAAGGCTGTGTACGAGTTGCGCAAATTCTGCGCGAA
GGTCAAGAACGAGTTGCAGGCGTAGGTGGAAAGCCAACATTTATCAAGCC
GAGGTGTTGGCCACGAGAAAGGGCAAGTTCAGCGAGGAGATGCACACCAA
GGCTGTGTACGAGTTGCGCAAATTCTGCGCGAAGGTCAAGAACGAGTTGC
AGGCGTAG
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